Commit graph

12247 commits

Author SHA1 Message Date
Tiziano Müller
c0cb92b2f6 SIRIUS package: add v6.3.2 + Python/MKL support (#12472)
* Add version 6.3.2 (which does not require patches like 6.1.5)
* Add +python variant to build Python bindings
* Option to build shared libraries does not exist for newer
  versions including 6.3.2
* Update 'libs' property (library names are different for newer
  versions)
* Add support to detect and build with MKL as blas provider
2019-08-23 15:51:51 -07:00
Sinan
a38edff0c8 New package: py-kitchen (#12464) 2019-08-23 15:24:10 -07:00
Kelly (KT) Thompson
fdd7314cd1 New package: py-opppy (#12483) 2019-08-23 15:22:31 -07:00
brietzke
c900cd64c3 eccodes package: apply cmake-patch only when @:2.10 (#12512) 2019-08-23 15:09:28 -07:00
Greg Sjaardema
b8175e3fae SEACAS package: add fixed versions and adios2 variant (#12503)
SEACAS is now using versions instead of just relying on always
installing master. There are now tagged versions.

The most recent version is the first that can be used with a
non-patched develop version of the CGNS package; previously, seacas
required that the CGNS library have some internally-developed patch
applied, but this is no longer needed.

Also, added support for adios2 package with the adios2 variant.
This currently defaults to off.
2019-08-23 15:08:02 -07:00
Greg Sjaardema
4ff95dbd85 parallel-netcdf package: add version 1.11.2 (#12502) 2019-08-23 15:03:25 -07:00
Paul
6a417fc35c Go package: add version 1.12.9 (#12496) 2019-08-23 15:00:44 -07:00
sameershende
b1a9edbc7c tau package: add version 2.28.2 (#12524) 2019-08-23 14:41:28 -07:00
Chuck Atkins
052b62153e
ecp-io-sdk: add UnifyFS and VeloC (#12486)
* ecp-io-sdk: Update UnifyFS

* ecp-io-sdk: Enable VeloC
2019-08-23 14:14:11 -04:00
Tamara Dahlgren
b42324c23b bugfix: template create constructor args (#12536)
c9e214f updated template creation by passing **kwargs to package
template classes but the template classes were not updated to accept
them; this adds **kwargs to package template initializers where they
are needed.
2019-08-23 10:45:17 -07:00
Sinan
f199b2d42e new package: py-blinker (#12531) 2019-08-23 11:03:16 -05:00
Sinan
e8f0e6936c new package: py-path-py (#12534) 2019-08-23 10:49:14 -05:00
Hironori-Yamaji
00bb6a0b37 openstf: new package (#12538) 2019-08-23 10:40:09 -05:00
Sinan
dd8efee17e new package: py-simplekml (#12541)
* new package: py-simplekml

* add python dependency version info
2019-08-23 10:33:54 -05:00
Sinan
54d561a443 new package: py-pytailf (#12542) 2019-08-23 10:32:50 -05:00
Sinan
74ad9ff70c new package: py-termcolor (#12544) 2019-08-23 10:31:49 -05:00
Valentin Clement (バレンタイン クレメン)
edae707b9c Add version 2.0 (#12545) 2019-08-23 10:30:39 -05:00
Seth R. Johnson
c86006e948 Skip invisible non-packages in package directory. (#12467)
Having a non-directory invisible file causes `spack find` to die. This
fixes the logic to ignore invalid module names but only warn if they're
visible.
```
NotADirectoryError: [Errno 20] Not a directory: '/spack/var/spack/repos/builtin/packages/.DS_Store/package.py'
```
2019-08-23 06:42:17 +02:00
Phil Carns
a707c5bd2b libfabric package: add kdreg variant (off by default) (#12521)
This variant (off by default) adds support for the kdreg option in
the GNI provider. It is disabled by default in order to avoid
potential runtime conflicts with the cray-mpich library. Only one
library at a time can use this feature.

This patch allows the libfabric package to work correctly out of
the box on systems like Cori at NERSC (since it's CLE7 update).
Otherwise the spack build may autodetect kdreg headers on the system
and enable this problematic feature.
2019-08-22 17:02:56 -07:00
Jennifer Herting
21f2a1ef83 py-cloudpickle package: add version 1.2.1 (#12518) 2019-08-22 16:56:47 -07:00
Greg
d5c3cc0a85 esmf: add v7.1.0r, with a gcc patch for macOS (#12509) 2019-08-22 16:55:56 -07:00
Sinan
0e907326f5 New package: py-multi-key-dict (#12508) 2019-08-22 16:55:11 -07:00
Hironori-Yamaji
3607aa486f New package: EEM (#12321) 2019-08-22 16:05:22 -07:00
Axel Huebl
7b2470236e nlohmann-json: v3.7.0 (#12517)
* nlohmann-json: 3.7.0

The version 3.6.0 fix compile issues with GCC 9.0.

* nlohmann-json: proper test handling

tests are controlled via `spack install --test root|all ...`
instead of a variant.
2019-08-22 20:32:06 +02:00
Tamara Dahlgren
c9e214f6d3 Spack BundlePackage: a group of other packages (#11981)
This adds a special package type to Spack which is used to aggregate
a set of packages that a user might commonly install together; it
does not include any source code itself and does not require a
download URL like other Spack packages. It may include an 'install'
method to generate scripts, and Spack will run post-install hooks
(including module generation).

* Add new BundlePackage type
* Update the Xsdk package to be a BundlePackage and remove the
  'install' method (previously it had a noop install method)
* "spack create --template" now takes "bundle" as an option
* Rename cmd_create_repo fixture to "mock_test_repo" and relocate it
  to shared pytest fixtures
* Add unit tests for BundlePackage behavior
2019-08-22 11:08:23 -07:00
Omar Padron
47238b9714 new package: libglvnd (#12183)
* new package: libglvnd

* remove virtual provides from libglvnd

libglvnd does not provide them directly, but
through implementations that depend on it.

* fix flake8 errors

* libglvnd: fix style/remove unecessary variants

* remove older libglvnd version

* explicitly enable all libglvnd stubs

* libglvnd: conflict with non-linux platform
2019-08-22 14:08:07 -04:00
Satish Balay
892a552495
petsc: update url to gitlab (#12506) 2019-08-22 12:40:47 -05:00
Greg Becker
5af2378ece compiler install: fix bug in construction of compiler spec (#12507) 2019-08-22 09:57:53 -07:00
Derick Huth
fadba727d3 Chill package: build fixes (#12249)
* Specify rose/boost dependencies separately
* Replace custom bootstrap phase with autoreconf phase and fix typo
  when locating bash exe
* Add bison/flex dependencies
* Fix configure args typo
2019-08-21 18:39:06 -07:00
Peter Scheibel
661b1da5d0
'spack spec --yaml' command now writes build deps to yaml (#12317)
This allows "spack spec --yaml" to generate a spec YAML file that can
be used with "spack install -f". Before, this would fail in cases
where the spec had build dependencies.
2019-08-21 18:32:31 -07:00
Chris Green
2499c047f0 Emacs directives for fill-column setting. 2019-08-21 18:21:05 -07:00
Chris Green
ad4309b782 Fetch strategies: new global option no_cache, new git option get_full_repo.
* All fetch strategies now accept the Boolean version keyword option `no_cache` in order to allow per-version control of cache-ability.
* New git-specific version keyword option `get_full_repo` (Boolean). When true, disables the default `--depth 1` and `--single-branch` optimizations that are applied if supported by the git version and (in the former case) transport protocol.
* The try / catch blog attempting `--depth 1` and retrying on failure has been removed in favor of more accurately ascertaining when the `--depth` option should work based on git version and protocol choice. Any failure is now treated as a real problem, and the clone is only attempted once.
* Test improvements:
  * `mock_git_repository.checks[type_of_test].args['git']` is now specified as the URL (with leading `file://`) in order to avoid complaints when using `--depth`.
  * New type_of_test `tag-branch`.
  * mock_git_repository now provides `git_exe`.
  * Improved the action of the `git_version` fixture, which was previously hard-wired.
  * New tests of `--single-branch` and `--depth 1` behavior.
* Add documentation of new options to the packaging guide.
2019-08-21 18:21:05 -07:00
Jon Rood
1b8e0c36cb Percept package: add version (#12434)
* Choose a specific commit as a version (before, the only version was
  the master branch)
* Add CMake patch which allows for building the version added here
  (this replaces the existing patches for percept in Spack)
* Update trilinos dependency
2019-08-21 18:00:41 -07:00
Axel Huebl
7770372100 New package: c-blosc2 (#12430) 2019-08-21 17:52:05 -07:00
Sinan81
63f5054140 new package: py-grequests 2019-08-21 17:50:17 -07:00
liuyangzhuan
7303b6cdc9 ButterflyPACK package: add URL, versions 1.0.0 and 1.0.1 (#12428) 2019-08-21 17:23:18 -07:00
Mark Olesen
e47b65a2a7 Remove package: of-adios-write (#12443)
old (adios1) integration is not supported, maintained, or recommended
for openfoam. The of-adios-write package serves no purpose any more.
2019-08-21 17:14:13 -07:00
Chris Green
ccb688f575 Fix to option text for help command. (#12444) 2019-08-21 17:11:24 -07:00
Sinan81@github
9ae6a07fe8 new package: py-empy 2019-08-21 17:07:08 -07:00
Sinan
be302cac1f New package: py-fallocate (#12450) 2019-08-21 16:51:25 -07:00
Sinan81
82080f0bc9 new package: Exiv2 2019-08-21 16:47:13 -07:00
Mark Olesen
bec358941d re2c package: add version 1.2.1 (#12455) 2019-08-21 16:45:19 -07:00
Pariksheet Nanda
105da8de02 py-deeptools: add 3.3.0 (#12456)
Also update dependencies to build latest py-deeptools versions and
add a patch to run tests:

* Replace pypi URL with github URL to download tests
* Update dependency versions of py-pysam, py-matplotlib
* Add new py-deeptoolsintervals package as a dependency
* Add py-plotly and py-nose dependencies
* Patch setup.py to collect and run tests
2019-08-21 16:43:44 -07:00
Mark W. Krentel
918da9aa55 hpcviewer: add version 2019.08 2019-08-21 16:30:15 -07:00
Sinan
886ecb97e3 New package: py-fortranformat (#12459) 2019-08-21 16:24:34 -07:00
Sinan81
d8d506e39a new package: py-geoalchemy2 2019-08-21 16:22:34 -07:00
Sinan
f1b377b3d5 New package: libsecret (#12461) 2019-08-21 16:20:26 -07:00
Sinan
fd6485efac new package: py-mechanize (#12468) 2019-08-21 16:17:51 -07:00
Sinan81
17ee9c7229 new package: QtKeychain 2019-08-21 16:12:33 -07:00
Sinan81
08e389cb7d new package: py-humanize 2019-08-21 16:10:51 -07:00