* The beginnings of a package for shiny-server
Just stashing a WIP.
This doesn't work.
This goes for a while and/but blows up with some OpenSSL related issue.
* Make it work!
Yay!
* shiny-server needs R with X support
My environment gets this for "free" from my packages.yaml, but it
should be explicity.
* Address feedback
- python version
- gcc dependency
- Flake8 comment rules
* Richer caveats and warnings.
* Convert to CMakePackage and fix python version typo
* Fix typo: noqab -> noqa
* Ensure proper build location, clean up comments
Fixes#2587
The concretizer falls back on using the root architecture (followed
by the default system architecture) to fill in unspecified arch
properties for a spec. It failed to check cases where the root could
be None.
* Update tinyxml
* url seems to have changed
* spack replaces "_2_6_2" with "_2.6.2" unless the url is explicitly
given
* copyfile is no longuer available by default
* URL version-parsing should work as of #2972
* Remove fake URLs from Spack
* Ignore long lines for URLs that start with ftp:
* Preliminary changes to version regexes
* New redesign of version regexes
* Allow letters in version-only
* Fix detection of versions that end in Final
* Rearrange a few regexes and add examples
* Add tests for common download repositories
* Add test cases for common tarball naming schemes
* Finalize version regexes
* spack url test -> spack url summary
* Clean up comments
* Rearrange suffix checks
* Use query strings for name detection
* Remove no longer necessary url_for_version functions
* Strip off extraneous information after package name
* Add one more test
* Dot in square brackets does not need to be escaped
* Move renaming outside of parse_name_offset
* Fix versions for a couple more packages
* Fix flake8 and doc tests
* Correctly parse Python, Lua, and Bio++ package names
* Use effective URLs for mfem
* Add checksummed version to mitos
* Remove url_for_version from STAR-CCM+ package
* Revert changes to version numbers with underscores and dashes
* Fix name detection for tbb
* Correctly parse Ruby gems
* Reverted mfem back to shortened URLs.
* Updated instructions for better security
* Remove preferred=True from newest version
* Add tests for new `spack url list` flags
* Add tests for strip_name_suffixes
* Add unit tests for version separators
* Fix bugs related to parseable name but in parseable version
* Remove dead code, update docstring
* Ignore 'binary' at end of version string
* Remove platform from version
* Flip libedit version numbers
* Re-support weird NCO alpha/beta versions
* Rebase and remove one new fake URL
* Add / to beginning of regex to avoid picking up similarly named packages
* Ignore weird tar versions
* Fix bug in url parse --spider when no versions found
* Less strict version matching for spack versions
* Don't rename Python packages
* Be a little more selective, version must begin with a digit
* Re-add fake URLs
* Fix up several other packages
* Ignore more file endings
* Add parsing support for Miniconda
* Update tab completion
* XFAILS are now PASSES for 2 web tests
- _spider in web.py was actually failing to spider deeper than a certain
point.
- Fixed multiprocessing pools to not use daemons and to allow recursive
spawning.
- Added detailed tests for spidering and for finding archive versions.
- left some xfail URL finding exercises for the reader.
- Fix noqa annotations for some @when decorators
* add packages for EasyBuild and dependencies
* fix remarks w.r.t. docstrings & download urls, make dependency specs stricter w.r.t. required versions
* fix easybuild-* dep specs, should be open-ended
* correct dep specs for easybuild and easybuild-easyconfigs using @3.1.2[:]
- Clean up spec_syntax tests: don't dependend on DB order.
- spec_syntax hash parsing tests were strongly dependent on the order the
DB was traversed.
- Tests now specifically grab the specs they want from the mock DB.
- Tests are more readable as a result.
- Add Python3 versions to Travis tests.
1. Fix#2807: Can't depend on virtual and non-virtual package
- This is tested by test_my_dep_depends_on_provider_of_my_virtual_dep in
the concretize.py test.
- This was actually working in the test suite, but it depended on the
order the dependencies were resolved in. Resolving non-virtual then
virtual worked, but virtual, then non-virtual did not.
- Problem was that an unnecessary copy was made of a spec that already
had some dependencies set up, and the copy lost half of some of the
dependency relationships. This caused the "can'd depend on X twice
error".
- Fix by eliminating unnecessary copy and ensuring that dep parameter of
_merge_dependency is always safe to own -- i.e. it's a defensive copy
from somewhere else.
2. Fix bug and simplify concretization of deptypes.
- deptypes weren't being accumulated; they were being set on each
DependencySpec. This could cause concretization to get into an infinite
loop.
- Fixed by accumulating deptypes in DependencySpec.update_deptypes()
- Also simplified deptype normalization logic: deptypes are now merged in
constrain() like everything else -- there is no need to merge them
specially or to look at dpeendents in _merge_dependency().
- Add some docstrings to deptype tests.
- Get rid of pkgsort() usage for preferred variants.
- Concretization is now entirely based on key-based sorting.
- Remove PreferredPackages class and various spec cmp() methods.
- Replace with PackagePrefs class that implements a key function for
sorting according to packages.yaml.
- Clear package pref caches on config test.
- Explicit compare methods instead of total_ordering in Version.
- Our total_ordering backport wasn't making Python 3 happy for some
reason.
- Python 3's functools.total_ordering and spelling the operators out
fixes the problem.
- Fix unicode issues with spec hashes, json, & YAML
- Try to use str everywhere and avoid unicode objects in python 2.
- Remove ascii encoding assumption from spack_yaml
- proc.communicate() returns bytes; convert to str before adding.
- Fix various byte string/unicode issues for Python 2/3 support
- Need to decode subprocess output as utf-8 in from_sourcing_files.
- Fix comments in strify()
- convert print, StringIO, except as, octals, izip
- convert print statement to print function
- convert StringIO to six.StringIO
- remove usage of csv reader in Spec, in favor of simple regex
- csv reader only does byte strings
- convert 0755 octal literals to 0o755
- convert `except Foo, e` to `except Foo as e`
- fix a few places `str` is used.
- may need to switch everything to str later.
- convert iteritems usages to use six.iteritems
- fix urllib and HTMLParser
- port metaclasses to use six.with_metaclass
- More octal literal conversions for Python 2/3
- Fix a new octal literal.
- Convert `basestring` to `six.string_types`
- Convert xrange -> range
- Fix various issues with encoding, iteritems, and Python3 semantics.
- Convert contextlib.nested to explicitly nexted context managers.
- Convert use of filter() to list comprehensions.
- Replace reduce() with list comprehensions.
- Clean up composite: replace inspect.ismethod() with callable()
- Python 3 doesn't have "method" objects; inspect.ismethod returns False.
- Need to use callable in Composite to make it work.
- Update colify to use future division.
- Fix zip() usages that need to be lists.
- Python3: Use line-buffered logging instead of unbuffered.
- Python3 raises an error with unbuffered I/O
- See https://bugs.python.org/issue17404
- Update YAML version to support Python 3
- Python 3 support for ordereddict backport
- Exclude Python3 YAML from version tests.
- Vendor six into Spack.
- Make Python version-check tests work with Python 3
- Add ability to add version check exceptions with '# nopyqver' line
comments.
* Run python setup.py test if --run-tests
* Attempt to import the Python module after installation
* Add testing support to numpy and scipy
* Remove duplicated comments
* Update to new run-tests callback methodology
* Remove unrelated changes for another PR
