Commit graph

22011 commits

Author SHA1 Message Date
Harmen Stoppels
bdc3bde74b
Bump py-botocore and add python constraints (#25210)
* Bump py-botocore and add python constraints

* Update var/spack/repos/builtin/packages/py-botocore/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-03 16:57:56 +00:00
eugeneswalker
4e9bccf2ef
e4s ci stack: update package preferences (#25163) 2021-08-03 09:30:14 -07:00
Harmen Stoppels
d92eff7e89
Add py-debtcollector (#25212)
* Add py-debtcollector

* Fix missing dependencies
2021-08-03 15:40:02 +00:00
Harmen Stoppels
1f191ef37c
Add py-netaddr (#25214) 2021-08-03 10:29:04 -05:00
Harmen Stoppels
d734bfda18
py-urllib3: add v1.26.6 (#25207) 2021-08-03 08:07:51 -07:00
Massimiliano Culpo
0026d60b60
Test bootstrapping in a workflow (#25138)
Add a workflow to test bootstrapping clingo on 
different platforms so that we can detect changes 
that break it.

Compute `site_packages_dir` in `bootstrap.py` as it was
before #24095, until we figure a better way to override
that attribute.
2021-08-03 16:53:40 +02:00
Harmen Stoppels
15bc4faf2d
py-s3tranfer: add v0.5.0, v0.4.2 (#25208) 2021-08-03 16:49:24 +02:00
Manuela Kuhn
7d0878f5c4
py-datalad: add new package (#25181) 2021-08-03 09:20:06 -05:00
Brent Huisman
a76365c72b
Bump Arbor package to v0.5.2 (#24519) 2021-08-03 13:13:19 +00:00
Sebastian Schmitt
73923f1e93
fmt: add v8.0.1 (#25201) 2021-08-03 06:04:39 -07:00
Michael Kuhn
fa729858ac
h5bench: new package (#25190) 2021-08-03 05:46:38 -07:00
Harmen Stoppels
62d59f0fb7
scrot: use tarball with configure script (#25176) 2021-08-03 14:13:08 +02:00
Rémi Lacroix
a62210efb9
midnight-commander: add v4.8.26 (#25178) 2021-08-03 14:11:41 +02:00
AMD Toolchain Support
d1ee325ecd
AOCC support for CloverLeaf (#25106)
* AOCC support for CloverLeaf

* removing patch as it is upstreamed to source

Co-authored-by: mohan002 <mohbabul@amd.com>
2021-08-03 07:06:38 -05:00
Adam J. Stewart
88d24150e6
py-scipy: add v1.7.1 (#25187) 2021-08-03 14:00:14 +02:00
Axel Huebl
420a8c2eb2
openPMD-api: make v0.13.4 preferred (#25188)
Keep the previous patch release as preferred as we investigate
a few regressions.
2021-08-03 13:52:35 +02:00
AMD Toolchain Support
5698850dc4
aocc 3.1.0: fix version detection for v3.1.0 (#25084) 2021-08-03 13:48:19 +02:00
Tom Payerle
c7e8bdf9cf
intel-tbb: allow compilation with nvhpc (#25044)
These are the versions tested (and successfully patched) against
intel-tbb.nvhpc-remove-flags.2017.patch: @2017, @2017.8, @2018, @2018.6
intel-tbb.nvhpc-remove-flags.2019.patch: @2019
intel-tbb.nvhpc-remove-flags.2019.1.patch: @2019.[1-6]
intel-tbb.nvhpc-remove-flags.2019.7.patch: @2019.[7-8]
intel-tbb.nvhpc-remove-flags.2019.9.patch: @2019.9, 2020.[0-3]

The intel-tbb.nvhpc-version-script-fix.2017.patch was tested and
applied successfully against all of the versions above.
2021-08-03 13:35:31 +02:00
John Vandenberg
d33d9d1f03
sbp: add new package (#25194) 2021-08-03 13:25:21 +02:00
Carlos Bederián
a4698f6122
aocc: add v3.1.0 (#25193) 2021-08-03 03:10:31 -07:00
Todd Gamblin
fc840c904b
executable: filter long paths from debug output (#25168)
Long, padded install paths can get to be very long in the verbose install
output. This has to be filtered out by the Executable class, as it
generates these debug messages.

- [x] add ability to filter paths from Executable output.
- [x] add a context manager that can enable path filtering
- [x] make `build_process` in `installer.py`

This should hopefully allow us to see most of the build output in
Gitlab pipeline builds again.
2021-08-03 10:00:33 +00:00
Tim Haines
e477101345
PAPI: add version 'master' (#25192)
This is needed for testing with the ECP Dev Tools SDK.

Co-authored-by: Tim Haines <thaines@cs.wisc.edu>
2021-08-03 02:34:32 -07:00
Adam J. Stewart
171001ca84
py-fiona: add v1.8.20 (#25196) 2021-08-03 11:20:43 +02:00
Rémi Lacroix
6fa803a38d
DIAMOND: add v2.0.11 (#25198) 2021-08-03 10:38:54 +02:00
Todd Gamblin
cf8d1b0387
refactor: convert build_process to use BuildProcessInstaller (#25167)
`build_process` has been around a long time but it's become a very large,
unwieldy method. It's hard to work with because it has a lot of local
variables that need to persist across all of the code.

- [x] To address this, convert it its own `BuildInfoProcess` class.
- [x] Start breaking the method apart by factoring out the main
      installation logic into its own function.
2021-08-03 10:24:24 +02:00
Todd Gamblin
0a0338ddfa bugfix: ensure all bootstrap context managers are exception-safe
When context managers are used to save and restore values, we need to remember
to use try/finally around the yield in case an exception is thrown.  Otherwise,
the cleanup will be skipped.
2021-08-03 10:07:11 +02:00
Todd Gamblin
693c4d8f3a spack style: improve tests for failure cases
This fixes the bad bootstrap test for spack style, and it refines the
asserrtions on other failure cases.
2021-08-03 10:07:11 +02:00
Dylan Simon
507d3c841c
don't spin writer daemon when < /dev/null (#25170) 2021-08-02 21:39:38 -07:00
Erik Schnetter
2dd2a5b167
rnpletal: New package (#25154)
* rnpletal: New package

RNPL is an old package that is still used today by my collaborators, but doesn't see any development any more. I'm creating a Spack package merely to make it easier to install it on various systems. The code is not modern (C without prototypes – yes, that used to be a thing), and a large diff modernizes the code to make it palatable to modern C and Fortran compilers.

RNPL contains several sub-package. The current Spack package builds only the main one.

* rnpletal: Remove unused import

* Convert into AutotoolsPackage

* Don't check for "shared" variant

* rnpletal: Change "version" to `develop`

* rnpletal: Use existing `configure` function
2021-08-02 14:01:45 -07:00
Ali Ahmed
a60e3f80f6
[curl] Fix brotli option flag (#25166)
Co-authored-by: Ali Ahmed <alia@splunk.com>
2021-08-02 12:46:56 -07:00
Adam J. Stewart
6d810cb2e7
Docs: add link to source code (#25088) 2021-08-02 12:36:40 -07:00
Satish Balay
413919be1f
petsc: add variants strumpack, scalapack (#25058)
strumpack: switch defaut to +shared
2021-08-02 13:48:33 -05:00
Sreenivasa Murthy Kolam
73a65dc370
modfiy hip-rocclr references for 4.1.0 and 4.2.0 releases (#24868) 2021-08-02 11:16:47 -07:00
Frank Willmore
0df067e64f
adjust for erroneous detection of nvc as gcc (#24915)
* adjust for erroneous detection of nvc as gcc

adjust for erroneous detection of nvc as gcc when it is built with gcc

* add missing parenthesis :/

* fix trailing whitespace

* re-work hdf5 patch for nvc to make it more general

* flake8 fixes

* Render as comment

Render intended note as a comment rather than logical constraint

Co-authored-by: Frank Willmore <willmore@anl.gov>
2021-08-02 11:13:32 -07:00
Tamara Dahlgren
413ea10e78
ci: Add RADIUSS stack to cloud CI (#23922)
Add RADIUSS software stack to gitlab PR testing pipelines
2021-08-02 10:19:35 -06:00
Fabian Brandt
71cd303362
Bump version 9.0 (#25039) 2021-08-02 15:56:55 +00:00
Harmen Stoppels
db08ce6105
Bump cmake (#25183) 2021-08-02 08:22:08 -07:00
Harmen Stoppels
ac8521e9b3
Do not issue a warning for a missing source id when installing from local sources (#24960) 2021-08-02 14:17:41 +02:00
Mikael Simberg
d628e3ba5c
Add maintainers for gperftools (#25156) 2021-08-02 13:46:38 +02:00
loulawrence
be3e6a0e9b
document config option "url_fetch_method" (#24638)
- Change config from the undocumented `use_curl: true/false` to `url_fetch_method: urllib/curl`.
- Documentation of `url_fetch_method` in `defaults/config.yaml`
- Default fetch option explicitly set to `urllib` for users who may not have curl on their system

To upgrade from `use_curl` to `url_fetch_method`, run `spack config update config`
2021-08-02 10:30:25 +02:00
Wouter Deconinck
cd8f7d844d
[imlib2] depends_on pkg-config, type = build; and new versions (#25030) 2021-08-02 09:53:19 +02:00
s1913388
2a20943f9b
Optimised Cloverleaf3D (#24920) 2021-08-02 09:40:43 +02:00
Sreenivasa Murthy Kolam
437c1e438e
add MIOPEN_AMDGCN_ASSEMBLER to cmake args (#25159) 2021-08-02 09:38:34 +02:00
Weiqun Zhang
55e218649a
amrex: 21.08 (#25175) 2021-08-01 15:47:48 -07:00
Erik Schnetter
f9703c1c9f
kadath: New package (#25162)
* kadath: New package

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* kadath: Add description to MPI variant

* kadath: Add empty line

* kadath: Add variant "codes=none" to avoid empty default

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-01 19:22:07 +00:00
Iman Hosseini
861abb512e
laghos: add variant with compiler optimization (#24910)
* add variant with compiler optimization

Update package.py to include variant with compiler optimization, benchmarked at A-HUG hackaton to improve major kernel time by roughly 3%.

* fix style

* Update var/spack/repos/builtin/packages/laghos/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-01 18:58:24 +00:00
Jen Herting
8867827a89
[py-asteval] added version 0.9.25 (#25107)
* [py-asteval] added version 0.9.25

* [py-asteval] 0.9.25 requires py-setuptools-scm
2021-08-01 11:43:58 -05:00
iarspider
a9bc118031
[giflib] Set LIBVER and LIBMAJOR when installing (#25173)
* Set LIBVER and LIBMAJOR

* Typo fix

* Fix 2

* Fix #3
2021-08-01 11:37:31 -05:00
Todd Gamblin
ab5954520f
spack diff: make output order deterministic (#25169)
The output order for `spack diff` is nondeterministic for larger diffs -- if you
ran it several times it will not put the fields in the spec in the same order on
successive invocations.

This makes a few fixes to `spack diff`:

- [x] Implement the change discussed in https://github.com/spack/spack/pull/22283#discussion_r598337448
      to make `AspFunction` comparable in and of itself and to eliminate the need for `to_tuple()`

- [x] Sort the lists of diff properties so that the output is always in the same order.

- [x] Make the output for different fields the same as what we use in the solver. Previously, we
      would use `Type(value)` for non-string values and `value` for strings.  Now we just use
      the value.  So the output looks a little cleaner:

      ```
      == Old ==========================        == New ====================
      @@ node_target @@                        @@ node_target @@
      -  gdbm Target(x86_64)                   -  gdbm x86_64
      +  zlib Target(skylake)                  +  zlib skylake
      @@ variant_value @@                      @@ variant_value @@
      -  ncurses symlinks bool(False)          -  ncurses symlinks False
      +  zlib optimize bool(True)              +  zlib optimize True
      @@ version @@                            @@ version @@
      -  gdbm Version(1.18.1)                  -  gdbm 1.18.1
      +  zlib Version(1.2.11)                  +  zlib 1.2.11
      @@ node_os @@                            @@ node_os @@
      -  gdbm catalina                         -  gdbm catalina
      +  zlib catalina                         +  zlib catalina
      ```

I suppose if we want to use `repr()` in the output we could do that and could be
consistent but we don't do that elsewhere -- the types of things in Specs are
all stringifiable so the string and the name of the attribute (`version`, `node_os`,
etc.) are sufficient to know what they are.
2021-08-01 05:15:33 +00:00
Erik Schnetter
1e708bdb45
lorene: Install only executables, not unrelated files (#25148)
* lorene: Install only executables, not unrelated files in the same directory

* lorene: Don't determine compile dependencies

The current way doesn't work (cpp misses C++ include paths), and we don't need dependencies anyway.

* lorene: Correct BLAS library names

* lorene: Remove comment
2021-07-31 21:11:34 -05:00