hlrs-software-stack/spack

Author	SHA1	Message	Date
Peter J. Scheibel	74b439b7f1	Support 'COMPILERVERSION' in spec format string	2016-11-04 11:41:20 -07:00
Denis Davydov	1eeef97c78	remove obsolete instructions on hacking clang+gfortran (#2217 ) * remove obsolete instructions on hacking clang+gfortran * add detailed instructions on how to setup Clang+gfortran on macOS	2016-11-03 08:06:33 -07:00
Massimiliano Culpo	36a4ca8b11	spack install: forward sys.stdin to child processes (#2158 ) * spack install: forward sys.stdin to child processes fixes #2140 - [ ] redirection process is spawned in __enter__ instead of __init__ - [ ] sys.stdin is forwarded to child processes * log: wrapped __init__ definition	2016-11-03 08:03:10 -07:00
Massimiliano Culpo	5b5894afba	spack find: accepts anonymous specs as arguments fixes #2170 (#2188 )	2016-11-03 00:45:15 -07:00
Todd Gamblin	b304387308	Fix style checker bug. (#2214 ) * Fix style checker bug. * spack flake8: print cwd-relative paths by default, with root-relative option.	2016-11-02 12:17:35 -05:00
Barry Smith	9455621ec2	Add support for gfortran to be used with clang (#2192 ) 1) list gfortran as a fc and f77 compiler that can work with clang 2) allow compatible gfortran to ./spack compiler find with clang by matching version numbers This is based on the discussions in https://github.com/LLNL/spack/issues/237 https://github.com/dealii/dealii/wiki/deal.II-in-Spack#mixing-gcc-and-clang-on-osx This is not a long term solution but something to get us through the next months until the compiler infrastructure is reworked to allow mixing and matching for C/C++ and Fortran compilers Funded-by: IDEAS Project: IDEAS/xSDK Time: 1.5 hours	2016-11-02 11:17:13 -05:00
scheibelp	45a4388164	Update references in debug command (#2204 )	2016-11-01 13:55:13 -07:00
Todd Gamblin	edfe2297fd	Improved package.py error handling. (#2187 ) - Detailed debug information is now handed back to the parent process from builds, for any type of exception. - previously this only worked for Spack ProcessErrors, but now it works for any type of error raised in a child. - Spack will print an error message and source code context for build errors by default. - It will print a stack trace when using `spack -d`, even when the error occurred in the child process.	2016-10-31 15:32:19 -07:00
Todd Gamblin	1b7f9e24f4	Add `spack flake8` command. (#2186 ) - Ported old run-flake8-tests qa script to `spack flake8` command. - New command does not modify files in the source tree - Copies files to a temp stage modifies them there, and runs tests. - Updated docs and `run-flake8-tests` script to call `spack flake8`.	2016-10-31 11:40:20 -07:00
Todd Gamblin	4be703cde0	Allow common args to be written the same way regular args are.	2016-10-30 23:55:00 -07:00
Todd Gamblin	8f21332fec	Bugfix: '::' only worked on top-level key in config. - generalized and fixed to work with any key in YAML file - simplified schema writing, as well - add more unit tests for the config system - Rename test/yaml.py to test/spack_yaml.py - Add test/yaml.pyc to ignored pyc files.	2016-10-30 23:55:00 -07:00
Todd Gamblin	d155156e32	Documentation for configuration	2016-10-30 23:55:00 -07:00
Todd Gamblin	b962622975	Add `spack arch --platform` option	2016-10-30 23:55:00 -07:00
Todd Gamblin	58e76721b9	Make provider_index use spack yaml for cleaner output.	2016-10-30 23:55:00 -07:00
Todd Gamblin	da760a66de	source_cache, misc_cache, verify_ssl, checksum, & dirty in config.yaml - Added new preferences to config.yaml: - source_cache - misc_cache - verify_ssl - checksum - dirty	2016-10-30 23:55:00 -07:00
Todd Gamblin	22b14e0f23	Add module_roots to config.yaml	2016-10-30 23:55:00 -07:00
Todd Gamblin	0da639298c	Move temp directory configuration to config.yaml - Moved temp finding logic to spack.stage - Updated stage tests - Added tests for new path substaitution of $user, $spack, $tempdir	2016-10-30 23:55:00 -07:00
Todd Gamblin	9347f86939	Rename install.yaml -> config.yaml, install_area -> "store" - Added a schema for config.yaml - Moved install tree configuration to config.yaml - Moved etc/spack/install.yaml to etc/spack/defaults/config.yaml - renamed install_area to "store", to use a term in common with guix/nix. - in `config.yaml` file, it's called the `install_tree` to be more intuitive to users. - `install_tree` might've worked in the code, but `install_tree` is already a global function in the spack namespace, from llnl.util.filesystem.	2016-10-30 23:55:00 -07:00
Benedikt Hegner	24901f7a38	add documentation for new option to set install area	2016-10-30 23:55:00 -07:00
Benedikt Hegner	c557e76565	refactor settings for install area and make them config options	2016-10-30 23:55:00 -07:00
Matt Belhorn	7ccf56a0b7	Removes cyclic dependency on spack.config. (#2121 ) Merge #2030 added a cyclic dependency between the Cray platform needing to read a `targets.yaml` config file and `config.py` needing to get the platform names. This commit removes the cyclic dependency in favor of the more general config scheme. It also removes the now functionless `targets.yaml` config file. This breaks 'frontend' targets on the Cray platform but all architecture targets, including the frontend, that are provided by CrayPE are added to the Platform anyway so users can be explicit about the architecture targeted by the Cray compiler wrappers: ``` spack spec libelf arch=cray-CNL-frontend ``` becomes ``` spack spec libelf arch=cray-CNL-mc8 # on an XK7 or spack spec libelf arch=cray-CNL-sandybridge # on an older XC30, etc.. ``` The only way the 'frontend' target can be defined after this commit is through target environment variables.	2016-10-30 21:02:27 -07:00
Massimiliano Culpo	9989f8e267	module file support: major rework of docs (#2169 ) * module file support: major rework of docs * module file support: fixed issues found by @adamjstewart - list or enumeration should not be indented - use console instead of bash or csh in things that are not scripts - other typos * module file support: fixed other issues found by @adamjstewart - tables should not be indented - substitute lines with pyobject to import an entire function - get help output running commands - typos * module file support: fixes according to review comments - @citibeth moved `spack module loads` after `spack load` - @glennpj tried to clarify installation table + changes to language - @tgamblin Removed top level section and moved the whole thing into the reference manual * module file support: moved directive before spack module loads	2016-10-30 12:41:41 -07:00
Massimiliano Culpo	4d35ac6a16	configuration file for modules : fixed enable keyword (#2176 ) - enable keyword works again - test/modules.py : proper clean-up after tests	2016-10-30 12:30:51 -07:00
Barry Smith	ef2c42a889	Do not check directory layout for external packages (#2172 ) External packages do not have an spec.yaml file so don't check for it. Without this change any time a package depends on an external package when the new package is installed you will get the error Install prefix exists but contains no spec.yaml This problem has also haunted me since I started using Spack since PETSc depends on Python and I used an external python but fortunately it was relatively easy to debug once I could reproduce it at will. Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour	2016-10-29 20:57:41 -07:00
Matthew Scott Krafczyk	c2d58d39dd	Import dso_suffix from spack.build_environment in abi.py (#2174 ) Fixes #1845	2016-10-29 16:47:06 -07:00
scheibelp	23683c65de	Use Spec.format for token substitution in modules (#1848 ) This replaces a custom token-based substitution format with calls to Spec.format in modules.py This also resolves a couple issues: - LmodModules set configuration globally instead of in its initializer which meant test-specific configuration was not applied - Added support for setting hash_length=0 for LmodModules. This only affects the module filename and not the directory names for the hierarchy tokens in the path. This includes an additional unit test.	2016-10-29 13:56:34 -07:00
Adam J. Stewart	58409a2eaf	Fix rpath linking for NAG, add documentation on setup (#2142 )	2016-10-27 15:28:09 -07:00
Elizabeth Fischer	12270b9dbf	Remove support for deprecated package. See also #2085 and #2086 (#2090 )	2016-10-26 21:53:08 -07:00
George Hartzell	bf08bd7076	Fix typo: _choiches -> _choices (#2127 ) The breaks `spack create`.	2016-10-26 20:39:08 -07:00
George Hartzell	e652a32f05	typo: vlaues -> values (#2147 )	2016-10-26 17:51:01 -07:00
Elizabeth Fischer	3895c974a0	Removed documentation on false paths as per #2083 (#2146 ) Removed documentation on false paths as per #2083	2016-10-26 17:11:54 -07:00
Denis Davydov	9f54cea5c5	document recommended usage of system blas/lapack (#2081 ) * document recommended usage of system blas/lapack * update doc * minor * reword	2016-10-26 16:22:18 -07:00
Massimiliano Culpo	37dc719d13	ProcessError : now the exception is correctly pickled and passed across processes. (#2143 )	2016-10-26 15:17:20 -07:00
Massimiliano Culpo	e73ab84680	spack install : added --log-format option (incorporates test-install command) (#2112 ) * spack install : added --log-format option (incorporates test-install command) fixes #1907 * qa : removed extra whitespace	2016-10-26 14:22:46 -07:00
Denis Davydov	33fb7bbd1b	add a unit test for conretization with develop version (#2064 )	2016-10-26 01:49:52 -07:00
Denis Davydov	39772e4c4c	filter system paths (#2083 ) * add filter_system_paths() * filter system paths in set_build_environment_variables() * two function: lib/inc + bin * reverse order in bin * fix order * minor * improvements of the code * more cleanup * alternative solution for filter_bins * fiddle base alalazo's approach * minor * minor	2016-10-25 11:25:13 -07:00
Adam J. Stewart	a250792202	Find compatibility versions of GCC (#2099 )	2016-10-25 11:07:49 -07:00
Massimiliano Culpo	7a575d2f4b	multimethod.py : calls functools.wraps before returning the correct method fixes #2118 (#2119 )	2016-10-25 08:30:40 -07:00
Massimiliano Culpo	b27e78cd78	spack setup : fixed regression after #1186 (#2117 )	2016-10-25 07:53:11 -07:00
Todd Gamblin	0f6a5cd385	Merge pull request #1186 from epfl-scitas/features/install_with_phases do_install : allow for an arbitrary number of phases	2016-10-24 17:13:49 -07:00
Todd Gamblin	c1ad4bde28	Rename EditableMakefile to MakefilePackage	2016-10-24 16:41:20 -07:00
Joseph Ciurej	7dd14870ce	Bug Fix : Apply Compiler Flags Specified by Manual Compiler Configuration (#1532 ) * Fixed a bug causing config-specified compiler flags to be ignored. Updated the compiler config so all flags are in a separate section. * Updated the documentation for the `compilers.yaml` file spec. * Implemented basic testing for the 'flags' section of compiler config. * Fixed a few minor problems with the manual compiler config documentation.	2016-10-24 14:37:03 -07:00
George Hartzell	e35c023c61	Typo: becuase -> because (#2110 )	2016-10-24 14:28:04 -07:00
Elizabeth Fischer	4f0b7cd2c2	Small fix to docs. (#2092 )	2016-10-24 11:09:02 -07:00
Massimiliano Culpo	8af9881e9b	spack test : exits after ctrl+c fixes #2029 (#2082 )	2016-10-24 11:07:08 -07:00
alalazo	7bd735416d	package.py : moved each specialized package to its own module file	2016-10-23 22:38:19 +02:00
alalazo	e0f3188970	spack setup : improved error message	2016-10-23 19:10:07 +02:00
alalazo	fa3f07c092	CMakePackage, AutotoolsPackage : added default behavior on check	2016-10-23 19:02:46 +02:00
alalazo	ebbbed166e	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase	2016-10-23 13:35:12 +02:00
alalazo	284ed13fa6	spack.error : fixed pickling and representation to permit to pass FetchErrors	2016-10-23 13:34:29 +02:00
alalazo	bdf4832269	spack build, spack configure : added commands	2016-10-22 17:08:52 +02:00
alalazo	484aaf50cc	CMakePackage : changed method name from `wdir` to `build_directory`	2016-10-22 14:54:26 +02:00
alalazo	8091a3d6cb	do_install : use build_system_class attribute instead of `type(self).__base__`	2016-10-22 10:48:16 +02:00
alalazo	c84123dce5	spack info : shows the build-system class used	2016-10-22 10:39:33 +02:00
Matthew LeGendre	859d296105	Don't clear LD_LIBRARY_PATH and friends from compiler wrappers (#2074 ) * Don't clear LD_LIBRARY_PATH and friends from compiler wrappers * remove debugging print	2016-10-21 16:25:12 -07:00
alalazo	482f60d1d3	packages : moved decorators into AutotoolsPackage and CMakePackage	2016-10-22 01:03:07 +02:00
alalazo	012da99644	spack create : fixed typo	2016-10-22 00:10:37 +02:00
alalazo	e8dafd1090	Removed space before colon in `FIXME:`, added one line description of guess classes	2016-10-21 23:54:11 +02:00
alalazo	715e029361	spack info : added phases	2016-10-21 22:44:41 +02:00
Matthew LeGendre	5ff08386af	Remove unnecessary blackslash for flake8	2016-10-21 13:17:23 -07:00
alalazo	fd2b72fd0f	qa : flake8 issues	2016-10-21 22:15:29 +02:00
alalazo	04821c7be8	spack create : now creates packages that are derived from AutotoolsPackage and CMakePackage	2016-10-21 22:12:21 +02:00
Matthew LeGendre	73b46a92bc	Fix concretize bug where provider sort couldn't handle version ranges	2016-10-21 11:59:41 -07:00
Adam J. Stewart	52158d9316	Add new Version property to handle joined version numbers (#2062 ) * Add new version property to handle joined version numbers * Add unit test for new joined property * Add documentation on version.up_to() and version.joined	2016-10-21 07:49:36 -07:00
Massimiliano Culpo	aa86432ec6	patch directive : fixed retrieval from urls ( fixes #1584 ) (#2039 ) * patch directive : fixed retrieval from urls fixes #1584 - add support for 'gz' archives - fixed bugs with URL patches - updated nwchem * patch directive : added checksum to UrlPatch - refactored classes in patch.py - updated nwchem * patch directive : added caching	2016-10-21 07:32:52 -07:00
alalazo	2251428f0a	CMakePackage : changed `list()` to []	2016-10-21 13:01:55 +02:00
alalazo	5ce3071143	do_install : removed install_self from the list of arguments (leftover after rebasing #1956 )	2016-10-21 12:51:38 +02:00
alalazo	213e3f0860	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase Conflicts: lib/spack/spack/cmd/install.py lib/spack/spack/cmd/setup.py	2016-10-21 12:38:43 +02:00
scheibelp	8111a4bb9d	Don't cache truncated dag hash for spec (#2048 ) If Spec.dag_hash was called for the first time with a 'length' specified, the cached hash was truncated. This ensures that the full hash is cached.	2016-10-18 22:34:46 -07:00
Massimiliano Culpo	0a3cc5e8e3	`Package.do_install` : removed `install_self` from arguments (#1956 ) * Removes the extra argument from Package.do_install while maintaining the changes in behavior pulled in #1603 * install : removed -i and -d shorthands (breaks backward compatibility) * Change ':' to ','	2016-10-18 14:25:07 -07:00
Eric	306eea5e59	Support for bazel (#2023 ) * Add package bazel * Add support for bazel-based builds	2016-10-18 07:46:42 -07:00
Adam J. Stewart	d891143a08	Ignore GPG/PGP signatures/checksums when finding available downloads (#2028 ) * Ignore GPG/PGP signatures/checksums when finding available downloads * Remove duplicated basename	2016-10-16 14:46:29 -07:00
Todd Gamblin	193f68083f	Platform-specific config scopes (#2030 ) * Add platform-specific configuration scopes. * Update `spack config` to use the new scope arguments.	2016-10-15 17:00:11 -07:00
Massimiliano Culpo	8d5961ecaf	spack purge : updated documentation fixes #1938 (#2025 )	2016-10-15 15:51:49 -07:00
Adam J. Stewart	78d3c7e2a2	Major updates to Contribution Guide (#1968 ) * Major updates to Contribution Guide * Grammar changes * Fix missing/extra backticks * Rewording, links, and tips added	2016-10-14 09:16:13 -07:00
Todd Gamblin	d861a52ebe	Use cYAML if it is available in Python. (#2010 )	2016-10-12 18:25:18 -07:00
Ben Boeckel	b369be65d7	Mock up Xcode devdir to make Qt5 work on Mac OS X (#1832 ) * build_environment: allow compilers to set up an environment * clang: mock up a toolchain directory for xcode Some projects ignore CC and CXX flags and instead use xcode to find the toolchain. Clang on Apple should set up the environment properly. Arguably, every compiler could do this on Apple, but let's see how this works out just for AppleClang for now. The Documentation directory is ~1.7G and the excluded platforms add up to about 7G. Ignoring swift saves another 500M. The resulting Xcode.app copy is in the 2G range. * compiler: set member variables early This is required so that later methods can query things such as the version of the compiler. * compiler: support finding the real path of the compiler On Apple, the /usr/bin compilers are actually wrapping tools themselves which query xcrun for the currently selected Xcode installation. Pierce this veil and get the real, full path the to underlying compilers instead. * icu4c: install with rpath On macOS, icu installs with a library ID of the library name. Enabling rpath makes its ID its full installed path which lets Qt5 link against it successfully. * qt: no -no-gtkstyle flag on Qt5 on macOS	2016-10-12 09:58:12 -07:00
Massimiliano Culpo	1925db5c77	spack list : updated documentation (#2004 ) * spack list : updated documentation * spack list : removed space before ':'	2016-10-12 09:43:28 -07:00
Glenn Johnson	5b070418e7	Documentation for modules configuration options (#1685 ) This PR add documentation for the `suffixes` and `hash_length` options for modules.yaml. This resolves #1416.	2016-10-11 23:14:42 -07:00
Todd Gamblin	488e1bab2c	Make `insecure` option work with curl AND git. (#1786 )	2016-10-11 23:13:40 -07:00
Massimiliano Culpo	eb17895630	environment modifications : permit to pass parameters along with file to be sourced (#1626 )	2016-10-11 22:55:14 -07:00
alalazo	dd56784d28	qa : flake8 issues	2016-10-11 16:44:18 +02:00
alalazo	ab995df777	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase Conflicts: lib/spack/spack/build_environment.py lib/spack/spack/cmd/install.py lib/spack/spack/cmd/setup.py lib/spack/spack/package.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/hdf5/package.py	2016-10-11 16:28:08 +02:00
Mario Melara	b42dbc01fe	Use python platform.system for system ID (#1499 ) * Rebase and merging using platform.system Rebasing and merging using platform.system instead of uname -a. * Add missing import platform statement * Remove subprocess import Remove ununsed import subprocess to make changes flak8 compliant	2016-10-11 07:04:29 -07:00
Todd Gamblin	9c5c8b22c8	Fix bug in `spack debug create-db-tarball` - Fix a bug handling '/' characters in branch names. - Make tarballs use a descriptive name for the top-level directory, not just `opt`.	2016-10-11 01:55:33 -07:00
Todd Gamblin	f0edfa6edf	Roll my my own bit_length function for Python 2.6 compatibility.	2016-10-11 01:55:33 -07:00
Todd Gamblin	222f551c37	Use a single lock file for stages and a single file for prefixes. - Locks now use fcntl range locks on a single file. How it works for prefixes: - Each lock is a byte range lock on the nth byte of a file. - The lock file is ``spack.installed_db.prefix_lock`` -- the DB tells us what to call it and it lives alongside the install DB. n is the sys.maxsize-bit prefix of the DAG hash. For stages, we take the sha1 of the stage name and use that to select a byte to lock. With 100 concurrent builds, the likelihood of a false lock collision is ~5.36e-16, so this scheme should retain more than sufficient paralellism (with no chance of false negatives), and get us reader-writer lock semantics with a single file, so no need to clean up lots of lock files.	2016-10-11 01:55:33 -07:00
Todd Gamblin	080a78664e	Add tests for locks with byte ranges.	2016-10-11 01:55:33 -07:00
Todd Gamblin	3d8d8d3644	Fix bug with lock upgrades. - Closing and re-opening to upgrade to write will lose all existing read locks on this process. - If we didn't allow ranges, sleeping until no reads would work. - With ranges, we may never be able to take some legal write locks without invalidating all reads. e.g., if a write lock has distinct range from all reads, it should just work, but we'd have to close the file, reopen, and re-take reads. - It's easier to just check whether the file is writable in the first place and open for writing from the start. - Lock now only opens files read-only if we can't write them.	2016-10-11 01:55:33 -07:00
Todd Gamblin	a024c6df95	Add base32_prefix_bits function to get prefix of DAG hash as an int.	2016-10-11 01:55:32 -07:00
Todd Gamblin	da6bbfb2d4	Add byte-range parameters to llnl.util.lock	2016-10-11 01:55:32 -07:00
Todd Gamblin	ea10e3bab0	Remove need to touch lock files before using. - Locks will now create enclosing directories and touch the lock file automatically.	2016-10-11 01:55:32 -07:00
Todd Gamblin	907fe912ef	Make llnl.util.lock use file objects instead of low-level OS fds. - Make sure we write, truncate, flush when setting PID and owning host in the file.	2016-10-11 01:55:32 -07:00
alalazo	f229290880	stage : try to remove dead links only of folder that you actually care about A use case where the previous approach was failing is : - more than one spack process running on compute nodes - stage directory is a link to fast LOCAL storage In this case the processes may try to unlink something that is "dead" for them, but actually used by other processes on storage they cannot see.	2016-10-11 01:55:32 -07:00
alalazo	f47dcdc47a	lockfiles : creates directory for locks if not already present	2016-10-11 01:55:32 -07:00
alalazo	a3fc492d45	diy : removed global write lock on the db	2016-10-11 01:55:32 -07:00
alalazo	74fb1029fa	uninstall : removed global lock	2016-10-11 01:55:25 -07:00
alalazo	b3a6e307b9	unit tests : fixed failing tests	2016-10-11 01:38:27 -07:00
alalazo	34fe51a4aa	install : finer graned locking for install command	2016-10-11 01:38:27 -07:00
James Wynne III	bd61a36587	Fixed set operation from undefined += to a union (#1963 ) Fixed flake8 issues	2016-10-11 01:30:11 -07:00
Massimiliano Culpo	b7a612dcdf	spack list : merged package-list into list (#1932 ) * spack list : merged package-list into the command * list : removed option for case sensitivity	2016-10-11 01:22:53 -07:00
Kelly Thompson	ff1108712c	Make CMake-based builds more verbose by default. (#1988 )	2016-10-11 00:43:36 -07:00
Massimiliano Culpo	b1a2728af6	uninstall : permits to uninstall all installed software fixes #1477 (#1973 )	2016-10-11 00:42:31 -07:00
Massimiliano Culpo	c8bf8a5e6e	md5 : normalizes input before computing the md5 fixes #1508 (#1977 ) Bottomline : - fetcher change the current working directory - relative paths were resolved differently depending on the prder f evaluation	2016-10-11 00:37:29 -07:00
Jean-Paul Pelteret	876c26f658	Add documentation for standard python repositories. (#1970 ) Fixes #1939	2016-10-07 22:46:22 -07:00
Isuru Fernando	ccf530ba5e	Check for `-r` in ccld mode too (#1972 )	2016-10-07 22:44:37 -07:00
Massimiliano Culpo	efae58a4ef	fixes #858 (#1961 ) Fix spack uninstall -f	2016-10-07 11:30:10 -07:00
Todd Gamblin	dbc864c9db	Restore default RPATH settings but allow packages to limit to immediate deps. (#1954 ) - Some packages (netcdf) NEED RPATHs for transitive deps. - Others (dealii) will exceed OS limits when the DAG is too large.	2016-10-06 15:57:23 -07:00
Adam J. Stewart	415ddeecf8	Fix bugs preventing readthedocs from rebuilding the documentation (#1945 )	2016-10-06 12:50:49 -07:00
Elizabeth Fischer	98f8f40896	[Bug Fix (and docs too)] : Do not select @develop version by default (#1933 ) * This fixes a bug in concretization. Before the recent change to the algorithm, the intent was that the @develop version, although "greater" than numberic versions, is never preferred BY DEFAULT over numeric versions. To test this... suppose you have a package with no `preferred=True` in it, and nothing in `packages.yaml`, but with a `develop` version. For the sake of this example, I've hacked my `python/package.py` to work this way. Without bugfix (WRONG: user should never get develop by default): ``` python@develop%clang@7.3.0-apple~tk~ucs4 arch=darwin-elcapitan-x86_64 ... ``` With bugfix (RIGHT: largest numeric version selected): ``` python@3.5.2%clang@7.3.0-apple~tk~ucs4 arch=darwin-elcapitan-x86_64 ... ``` * Documented version selection in concretization algo. * Fix typos * flake8	2016-10-06 09:08:15 -07:00
Denis Davydov	2ccb3d5531	add contribution guide focused on Git and PRs (#1664 )	2016-10-06 07:45:47 -07:00
Adam J. Stewart	83a074eea6	Fix various documentation bugs (#1678 ) * Fix various documentation bugs * Keep long option names, but don't include in Command Index * Use long option name * Explicitly designate sections to be listed in the Command Index * Consistent menu bar titles	2016-10-06 02:49:44 -07:00
Matt Belhorn	6b98e86056	Fixes bug closing Executable file io-streams (#1890 ) Input/output/error streams not directed to None or 'str' were not being closed because `close()` method was being called on the argument value (a string type) instead of the open file descriptor object.	2016-10-06 02:41:28 -07:00
Elizabeth Fischer	3de3664671	Fix fetch() method. Was being called with "wrong" arguments, raising exception. (#1916 ) DIYFetchBugfix	2016-10-06 02:40:24 -07:00
Elizabeth Fischer	208537f6f2	Fix Issues with non-numeric versions, as well as preferred=True (#1561 ) * Fix bug in handling of precedence of preferred=True vs. versions given in packages.yaml (#1556) * Standardized comparison of versions: numeric versions are always greater than non-numeric versions; and non-numeric versions are sorted alphabetically. This is a) simple b) ensures that non-numeric versions (such as 'develop') in package.py are not chosen ahead of numeric versions, when nothing is specified in packages.yaml Fixes Issue #1557 * Removed debugging output * Fix variable shadowing bug * Ensure develop < numeric version. * Bug fix. * Passes all unit tests in versions.py * flake8 fixes * flake8 fixes * Changed type test to be more correct. See http://stackoverflow.com/questions/8203336/difference-between-int-and-numbers-integral-in-python	2016-10-06 02:35:34 -07:00
scheibelp	508d79c475	Handle packages with unparseable extensions (#1758 ) This closes #1757 which provides an example of a url scheme where the version appears after the extension. Instead of extending the parsing logic to handle this case, this commit allows the user to specify their extension type. This helps Spack choose the appropriate decompressor and mirror archive filename.	2016-10-05 22:45:02 -07:00
Geoffrey Oxberry	6f0b32a71f	docs/getting_started: s/Macintosn/Macintosh/; (#1928 )	2016-10-05 21:15:54 -07:00
Elizabeth Fischer	015e29efe1	Documentation Improvements for SC16 (#1676 ) * Transferred pending changes from efischer/develop * 1. Rewrite of "Getting Started": everything you need to set up Spack, even on old/ornery systems. This is not a reference manual section; items covered here are covered more systematically elsewhere in the manual. Some sections were moved here from elsewhere. 2. Beginning to write three methods of application developer support. Two methods were moved from elsewhere. * Edits... * Moved sections in preparation for additional text to be added from old efischer/docs branch. * Moved 2 more sections. * Avoid accid * Applied proofreading edits from @adamjstewart * Fixed non-standard section characters. * Moved section on profiling to the developer's guide. * Still working on Spack workflows... * Finished draft of packaging_guide.rst * Renamed sample projects. * Updates to docstrings * Added documentation to resolve #638 (content taken from #846) * Added section on resolving inconsistent run dependencies. Addresses #645 * Showed how to build Python extensions only compatible with certain versions of Python. * Added examples of getting the right behavior from depends_on(). See #1035 * Added section on Intel compilers and their GCC masquerading feature. Addresses #638, #1687. * Fixed formatting * Added fixes to filesystem views. Added a caveats section to ``spack setup``. * Updated section on Intel compiler configuration because compiler flags currently do not work (see #1687) * Defined trusted downloads, and updated text based on them. (See #1696) * Added workflow to deal with buggy upstream software. See #1683 * Added proper separation between Spack Docs vs. Reference Manual * Renamed spack_workflows to workflows. Resolves a conflict with the .gitignore file. * Removed repeated section. * Created new "Vendor Specific Compiler Configuration" section and organized existing Intel section into it. Added new PGI and NAG sections; but they need to be expanded / rewritten based on the existing text plus research through Spack issues on GitHub. * Fixed text on `spack load --dependencies` to conform to reality. See #1662 * Added patching as option for upstream bugfixes. * Added section on using licensed compilers. * Added section on non-downloadable tarballs. * Wrote sections on NAG and PGI. Arranged compilers in alphabetical order. * Fix indent. * Fixed typos. * Clarified dependency types. * Applied edits from Adam J. Stewart. Spellchecked workflows and getting_started. * Removed spurious header * Fixed Sphinx errors * Fixed erroneous symbol in docstring. * Fix many typos and formatting problems. * Spacing changes * Added section on fixing Git problems. See #1779 * Fixed signature of install() method. * Addressed system packages in greater detail. See #1794 #1795 * Fixed typos * Fixed quotes * Duplicate section on Spack profiling removed from configuration.rst. It had earlier been moved to developer_guide.rst, where it fits better. * Minor edits - Tweak supported platform language. - Various small changes to the new getting started guide. * Fixed bug with quotes.	2016-10-05 13:00:27 -07:00
Elizabeth Fischer	abc9412f23	New command flag: spack install --dependencies-only (#1603 ) * 1. Renamed ignore_deps variable to install_deps (use positive logic). UI remains the same. 2. install_self kwarg added to do_install(). Enables installation of a package's dependencies without installing the package itself. 3. Added `spack install --dependencies-only <package>` command. * Flak8 fixes * Indentation problem	2016-10-05 11:23:06 -07:00
Adam J. Stewart	6ee020cea4	Add package for CONVERGE CFD (#1905 )	2016-10-05 10:37:50 -07:00
Elizabeth Fischer	8e75575b88	Added missing function for CMake builds. (#1250 ) * Added missing function for CMake builds. * Update build_environment.py * std_cmake_args Changed std_cmake_args to use get_std_cmake_args(). * Update build_environment.py Delete additional lines subsumed by get_std_cmake_args() * flake8.	2016-10-05 10:37:20 -07:00
alalazo	7a26c60dbd	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase Conflicts: lib/spack/spack/cmd/setup.py lib/spack/spack/package.py var/spack/repos/builtin/packages/gmp/package.py	2016-10-05 09:33:59 +02:00
Todd Gamblin	bff1656a1a	Read-only locks should close fd before opening for write. (#1906 ) - Fixes bad file descriptor error in lock acquire, #1904 - Fix bug introduced in previous PR #1857 - Backported fix from soon-to-be merged fine-grained DB locking branch.	2016-10-04 15:36:37 -07:00
Todd Gamblin	544fa3eddb	Fix some documentation build warnings. (#1902 ) - Fix issue with package_list.py regeneration confusing Sphinx. - Add -E option to avoid caching and make Sphinx happy.	2016-10-04 12:37:57 -07:00
Todd Gamblin	e9d4780bbc	Rework build environment and cc to use smaller RPATHs. (#1894 ) - Fixed up dependency management so that: - build deps go in PATH and -I - link deps go in -L args - only immediate link deps are RPATH'd The latter reduces the number of libraries that need to be added to DT_NEEDED / LC_RPATH. This removes redundant RPATHs to transitive dependencies.	2016-10-04 09:40:28 -07:00
Todd Gamblin	36c79e9df6	Fixes #1893 : missing import	2016-10-04 01:49:07 -07:00
Michael Kuhn	8d1ec0df3d	Fix read locks on read-only file systems (#1857 )	2016-09-30 09:45:08 -07:00
Todd Gamblin	295742e2b5	Fixes #1860 . Subversion builds sequentially due to race.	2016-09-28 15:18:52 -04:00
Todd Gamblin	cb229f0842	Fixes #1720 : spack reindex fails with invalid ref count. (#1867 ) * Fixes #1720: spack reindex fails with invalid ref count. - Database graph wasn't being built properly; dependencies were set up incorrectly in the nodes that ended up in the graph on reindex. - Reworked _add to increment ref count properly and to always build bottom-up to make the logic simpler to understand. * Add checks to ensure DB is a valid merkle tree.	2016-09-28 15:00:26 -04:00
Adam J. Stewart	6df84a794b	Add single letter arg flags for spack graph (#1871 )	2016-09-28 12:09:31 -04:00
Todd Gamblin	05d52752ff	Make graph_ascii support deptypes. - fix deptype support - by default, graph command omits build depedencies - update docs to use deptype args	2016-09-27 23:49:41 -04:00
Todd Gamblin	f082d26ddd	Fixes #1098 : spack graph crashes for large graphs. - Fixed logic for collapsing backward edges - Last collapse now depends on whether prior step in left collapse sequence alrady did the collapse.	2016-09-27 23:28:51 -04:00
Todd Gamblin	0d3d74e5c2	Improvements to the Spack graph command. - Distinguish between static (package) and dynamic (spec) graphs. - static graphs ignore conditions and multiple instances (hashes) and plot raw dependencies among packages. - dynamic graphs include information from particular specs (instances of packages) and can have multiple instances with hashes. - Allow graphing all packages in the install DB. - useful for debugging.	2016-09-27 11:00:50 -04:00
Todd Gamblin	43ca805248	Factor out canonical_deptype function, cleanup spec.py	2016-09-27 11:00:50 -04:00
Todd Gamblin	cd960caf8d	Clean up Exceptions in `spec.py`	2016-09-27 11:00:45 -04:00
Todd Gamblin	cb36aadaf6	Fix doc bugs, widen columns in the package list	2016-09-23 18:07:33 -07:00
Ben Boeckel	c7860322f5	package: fix variable name usage (#1829 )	2016-09-22 11:47:25 -07:00
Adam J. Stewart	f1f301ad3b	Fix spack checksum output indentation (#1826 )	2016-09-22 11:33:29 -07:00
Eric	025b779a30	Fix sbang for perl (#1802 ) * Perform shebang fix for all files * Fix sbang for perl scripts Otherwise perl would look at the #! line and call sbang again, resulting in an infinite loop.	2016-09-22 00:43:47 -07:00
Elizabeth Fischer	98f9dd266f	Remove SPACK_DIRTY env var (#1818 ) * Removed SPACK_DIRTY env var support. * Finished removing SPACK_DIRTY support. * Minor changes.	2016-09-22 00:43:33 -07:00
Massimiliano Culpo	1db2552644	fix : stops infinite recursion for python 2.6 (#1823 )	2016-09-22 00:31:28 -07:00
Massimiliano Culpo	d848559f70	Reworking of `lapack_shared_libs` and similar properties (#1682 ) * Turned <provider>_libs into an iterable Modifications : - added class LibraryList + unit tests - added convenience functions `find_libraries` and `dedupe` - modifed non Intel blas/lapack providers - modified packages using blas_shared_libs and similar functions * atlas : added pthread variant * intel packages : added lapack_libs and blas_libs * find_library_path : removed unused function * PR review : fixed last issues * LibraryList : added test on __add__ return type * LibraryList : added __radd__ fixed unit tests fix : failing unit tests due to missing `self` * cp2k and dependecies : fixed blas-lapack related statements in package.py	2016-09-21 12:27:59 -07:00
Elizabeth Fischer	899f3a7e37	Fixed bug propagating --dirty flag to sub-installs. (#1625 ) * Fixed bug propagating --dirty flag to sub-installs. * Fix syntax error * Allow --dirty flag to be set with SPACK_DIRTY env var. * Added dirty flag to `spack diy` and `spack setup`, as is currently in `spack install` * flake8	2016-09-21 03:56:56 -07:00
Matt Belhorn	94b24e8893	Adds all available CrayPE CPU targets to platform by default. (#1745 )	2016-09-21 01:48:33 -07:00
Alfredo Adolfo Gimenez	02307cf7ce	Set JAVA_HOME on module load and on dependent installs. (#1716 ) * Set JAVA_HOME on module load and on dependent installs. * Include environment setup from dependencies in dependee module (#1714)	2016-09-21 00:52:09 -07:00
Denis Davydov	27801c354b	fix MacOs class for Sierra (#1811 )	2016-09-20 17:25:23 -07:00
Massimiliano Culpo	eb8a0ef75e	fix : failing unit tests due to missing `self` (#1806 )	2016-09-20 07:47:13 -07:00
Eric	c9fe2cd469	Fix format string (in class RemoveFailedError) (#1803 )	2016-09-20 02:27:35 -07:00
Massimiliano Culpo	ea446c0f0e	lmod : added support for the creation of hierarchical lua module files (#1723 ) Includes : - treatment of a generic hierarchy (i.e. lapack + mpi + compiler) - possibility to specify which compilers are to be considered Core - correct treatment of the 'family' directive - unit tests for most new features	2016-09-20 02:26:25 -07:00
Eric	efadc0e299	Allow multi-user installations (#1804 ) When re-using previously downloaded tarballs, spack copies from `var/spack/stage/PACKAGE-VERSION-HASH/downloaded_file` to `var/spack/cache/PACKAGE/downloaded_file`. This fails if the source is owned by a different user (`shutil.copy` tries to retain all meta data including file ownership). Change to a non-meta-data copy function (`shutil.copyfile`).	2016-09-20 02:18:26 -07:00
Michael Kuhn	7043fff807	Fix location -p and -P (#1776 )	2016-09-15 10:48:28 +08:00
Erik Schnetter	6117ef44e4	Make libstdc++-detection work on Darwin (#1778 )	2016-09-15 10:42:14 +08:00
Adam J. Stewart	a22f5d8d86	Don't overwrite PYTHONPATH in docs Makefile (#1693 )	2016-09-08 09:02:56 -07:00
scheibelp	fd02a140c4	Fix fetching non-expanded resources from mirrors (#1310 ) This closes #1308, where fetching a non-expanded resource from a mirror will cause an error. This also ensures that when a URL resource is fetched from a mirror, that it will be named as though it were retrieved from the original URL. This is particularly useful for non-expanded resources since it ensures that the resource name is consistent for the installation (this is less important for expanded resources because the build takes place inside the expanded resource).	2016-09-07 07:02:24 -07:00
Todd Gamblin	f34dd94166	Add debug command for creating tarball of install DB.	2016-09-06 07:55:54 -07:00
alalazo	fc576a40d6	modules : ('build',) type dependencies are not accounted when autoloading fixes #1681	2016-09-06 15:07:11 +02:00
alalazo	47f6a6d3cf	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase Conflicts: lib/spack/spack/build_environment.py lib/spack/spack/package.py var/spack/repos/builtin/packages/astyle/package.py var/spack/repos/builtin/packages/lzo/package.py var/spack/repos/builtin/packages/openjpeg/package.py var/spack/repos/builtin/packages/swiftsim/package.py	2016-09-04 10:12:52 +02:00
Axel Huebl	16c5403ab3	spack boostrap: fix missing include (#1657 ) fix a missing include in booststrap. found on debian 8 with python 2.7	2016-09-03 09:43:00 -07:00
Massimiliano Culpo	497bbb3ae3	added package : pexsi (#1550 ) * pexsi : added package * cp2k : added pexsi (works for gcc+openmpi with and without plumed)	2016-09-03 08:13:47 -07:00
Todd Gamblin	07fa1cd5f8	Attributes for directives need to be set at class construction time. (#1718 ) - moved ensure_dicts() call from Package.__init__ to Package.__metaclass__.	2016-09-02 15:10:30 -07:00
Todd Gamblin	c8b4f978e1	Clean up stable hashing so that specs don't contain !!python/object/apply - only output basic lists, dicts, etc. - spec and database now parse and write specs as ordered data.	2016-09-02 03:03:47 -07:00
Todd Gamblin	674434b0fc	Merge branch 'UCL-RITS-hash_stability' into bugfix/hash-collision	2016-09-02 03:03:25 -07:00
Todd Gamblin	9268b7aa7c	Fix hash copying in _dup. - Spec._dup() incorrectly copied cached hashes and normal/concrete values even when dependency structure was not preserved. - Now these are only copied when all dependencies are copied.	2016-09-02 01:26:19 -07:00
Todd Gamblin	69d45b49e9	Fix hash handling in directory layout - Currently, build dependencies are not currently hashed; we are waiting to hash these until we have smarter concretization that can reuse more installed specs. The layout needs to account for this when checking whethert things are installed.	2016-09-02 01:26:01 -07:00
Todd Gamblin	69b68153a1	Fix `spack reindex` so that it will work if DB is corrupt (duh). - Transaction logic had gotten complicated -- DB would not reindex when corrupt, rather the error would be reported (ugh). - DB will now print the error and force a rebuild when errors are detected reading the old databse.	2016-09-01 11:29:32 -07:00
Todd Gamblin	bee5c05568	Update tests to reflect new in-memory hashing vs. coarser dag_hash. - Spack currently not hashing build deps (to allow more reuse of packages and less frequent re-installing) - Fast in-memory hash should still hash all deptypes, and installed specs will only reflect link and run deps. - We'll revert this when we can concretize more liberally based on what is already installed.	2016-09-01 11:29:32 -07:00
Todd Gamblin	235a045d08	Add option to copy only certain deptypes to Spec.copy() - can now pass these to Spec.copy() and Spec._dup(): - deps=True - deps=False - deps=(list of deptypes) - Makes it easy to filter out only part of a spec.	2016-09-01 11:29:32 -07:00
Todd Gamblin	409e7a2e64	Faster database loading. - use a 3-pass algorithm to load the installed package DAG. - avoid redundant hashing/comparing on load.	2016-09-01 11:29:32 -07:00
Todd Gamblin	a8aad95d41	Specs now cache result of "fast" in-memory hash. - Hash causes major slowdown for reading/setting up large DBs - New version caches hash for concrete specs, which includes all specs in the install DB	2016-09-01 11:29:32 -07:00
Todd Gamblin	c46a15b574	Fix dependency bug in database. Fixes #1265 , #1320 .	2016-09-01 11:25:01 -07:00
Todd Gamblin	4a87d4ab8e	Make gh-pages redirect to readthedocs.io	2016-08-31 19:40:22 -07:00
Erik Schnetter	efc570afab	Expand/clarify description of dependency types	2016-08-31 14:42:32 -04:00
Todd Gamblin	0ff048521b	Fix modules.rst doc build warning.	2016-08-30 22:15:13 -07:00
Todd Gamblin	3a9388b43a	Move sphinx-apidoc into conf.py, too.	2016-08-30 21:02:34 -07:00
Todd Gamblin	32834dd67d	fix sys.path in conf.py	2016-08-30 20:50:14 -07:00
Todd Gamblin	05545a2528	test.	2016-08-30 20:49:56 -07:00
Todd Gamblin	41675e5ed6	sorted command index, better colification.	2016-08-30 20:49:56 -07:00
Todd Gamblin	176a84a828	Don't test sphinx-generated conf.py for flake8 issues.	2016-08-30 20:30:43 -07:00
Todd Gamblin	d9c5191563	Fix issue with path to Spack.	2016-08-30 19:57:33 -07:00
Todd Gamblin	fc748eb3d0	Exclude spack.__all__ from documentation. Everything in the __all__ list in the spack module is from some other module, so only do their documentation in their original location. This also avoids issues like the fact that some directive names shadow spack core module names.	2016-08-30 16:36:50 -05:00
Adam J. Stewart	1be6267149	Undo changes to trailing triple quotes in docstring	2016-08-30 16:28:55 -05:00
Adam J. Stewart	9b455e9254	Resolve new documentation issues that have cropped up	2016-08-30 15:58:22 -05:00
Adam J. Stewart	ae2a803496	Make subcommands importable, '-' -> '_', fixes #1642	2016-08-30 15:36:33 -05:00
Adam J. Stewart	8d1a753a1b	Fix spack --profile, fixes #1639	2016-08-30 15:35:58 -05:00
Adam J. Stewart	6795f4ca12	Use console instead of shell syntax lexer, fixes #1634	2016-08-30 15:35:58 -05:00
Adam J. Stewart	f78134efa5	Fixes #1620 , Missing references	2016-08-30 15:32:54 -05:00
Adam J. Stewart	867a92f083	Fixes #1618 , Problems with spack package-list	2016-08-30 15:32:54 -05:00
Adam J. Stewart	69e50595bf	Fix docstrings for core Spack libraries, fixes #1612	2016-08-30 15:32:54 -05:00
Adam J. Stewart	02239c094e	Fix unexpected indentation in .rst files, #1612	2016-08-30 15:29:51 -05:00
Adam J. Stewart	0614bd206f	Fix #1608 , Include file not found	2016-08-30 15:28:09 -05:00
Adam J. Stewart	2326355497	Fix #1604 and fix #1605 , title underline problems	2016-08-30 15:28:08 -05:00
Adam J. Stewart	fda7fcd73d	Fix #1594 , duplicate explicit target name	2016-08-30 15:21:15 -05:00
Todd Gamblin	dae00fec29	Move all documentation generation into conf.py - extra steps in Makefile are ignored by readthedocs	2016-08-30 00:47:04 -07:00
Massimiliano Culpo	3ecf4ef8c9	resources : added docs fixes #1551 (#1627 )	2016-08-29 22:40:50 -07:00
Todd Gamblin	8ab47537c7	Fix exception constructors. (#1663 )	2016-08-29 22:34:47 -07:00
Todd Gamblin	f7ee8d001a	Merge pull request #1564 from adamjstewart/features/create Suggest setuptools when creating Python package	2016-08-29 09:11:45 -07:00
Tyler Esser	83897af710	Documentation: Fix accidental quotation. version() takes expand as a keyword. (#1640 )	2016-08-28 20:16:08 -07:00
Todd Gamblin	2053db4d17	Make clang detection work on AWS Ubuntu14.	2016-08-27 17:04:46 -07:00
Todd Gamblin	7ebb17e459	Remove stale operating_system.py test per discussion in #1631 - Test has not been registered in `__init__.py` for a while and needs a refresh.	2016-08-25 21:20:34 -07:00
Todd Gamblin	e9bc3a9e32	Merge pull request #663 from citibeth/efischer/160327-DocumentationImprovements [RtM] Documentation Improvements	2016-08-25 02:04:30 -07:00
Todd Gamblin	062ff13da6	Make `spack info` print deps in sorted order	2016-08-24 14:10:25 -07:00
Elizabeth Fischer	85be3aefa7	Put url_for_version() after versions in example.	2016-08-24 15:26:19 -04:00
Tom Scogland	2b6833cb80	appeasing flake8, also cleaning up header The header append lines were too long, so I just converted it into a multi-line string template so it's all one piece now instead of a bunch of appends.	2016-08-24 11:56:33 -07:00
Tom Scogland	73620fe868	avoid specifying --delim unless required This increases portability of generated module files to versions of environment_modules hearkening back to just after the turn of the millennium.	2016-08-24 11:00:16 -07:00
citibeth	8a481e7e13	Added CMake-based Development case study to docuemntation.	2016-08-23 16:39:01 -04:00
Elizabeth F	86d39255ec	Explained url_for_version()	2016-08-23 16:39:01 -04:00
citibeth	2efd7a5e0b	Added note on use of 'less -R' for colorized output.	2016-08-23 16:36:02 -04:00
Adam J. Stewart	df623dad15	Suggest setuptools when creating Python package	2016-08-19 14:31:42 -05:00
Nicolas Richart	37faa41b6f	stripping the links to remove spaces and '\n'	2016-08-15 21:13:25 +02:00
Todd Gamblin	1e673bfa42	Don't assume spack is in the path when buildign docs.	2016-08-15 10:49:09 -07:00
Adam J. Stewart	c815aed207	Update documentation for spack md5	2016-08-12 10:51:56 -05:00
becker33	ec7f58bf96	Merge pull request #1493 from xjrc/bugfix/nonbool-variants Bug Fix : Allow Packages to Have Variants w/ Non-Bool, Non-String Defaults	2016-08-11 11:33:54 -07:00
Matt Belhorn	568305ddff	Corrects Cray compiler name and adds missing version flag.	2016-08-11 13:56:21 -04:00
Mayeul d'Avezac	7769367747	dag_hash stabilised by depending on sorted dict Spec.to_node_dict uses OrderedDict This is to try and ensure that the dag_hash is stable across python version and processes.	2016-08-11 16:03:50 +01:00
alalazo	f5433477b9	qa : flake8 issues	2016-08-11 09:08:00 +02:00
alalazo	b4b9ebe7d7	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: lib/spack/llnl/util/tty/log.py lib/spack/spack/__init__.py lib/spack/spack/cmd/install.py lib/spack/spack/cmd/setup.py lib/spack/spack/package.py var/spack/repos/builtin/packages/blitz/package.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/qhull/package.py var/spack/repos/builtin/packages/szip/package.py	2016-08-11 08:55:20 +02:00
Todd Gamblin	867121ca68	Move jsonschema files out of `config.py` to their own package.	2016-08-10 16:33:38 -07:00
Todd Gamblin	bf1072c902	Make Spack core PEP8 compliant.	2016-08-10 16:33:37 -07:00
Todd Gamblin	e7f4fd404d	Fix superclass constructor for SpackNamespace objects.	2016-08-10 15:54:13 -07:00
Joseph Ciurej	aa860bf4df	Fixed a bug that was making packages with non-bool default variants to crash.	2016-08-10 11:54:33 -07:00
George Hartzell	4bca1c5440	Fix typo 'flexbile' -> 'flexible'	2016-08-09 15:13:08 -07:00
Todd Gamblin	9d4a36a62f	Properly re-raise exceptions from lock context handler.	2016-08-09 02:25:09 -07:00
Todd Gamblin	0c75c13cc0	Flake8 fixes	2016-08-09 02:25:07 -07:00
Todd Gamblin	102ac7bcf1	Move provider cache to home directory and refactor Transactions Major stuff: - Created a FileCache for managing user cache files in Spack. Currently just handles virtuals. - Moved virtual cache from the repository to the home directory so that users do not need write access to Spack repositories to use them. - Refactored `Transaction` class in `database.py` -- moved it to `LockTransaction` in `lock.py` and made it reusable by other classes. Other additions: - Added tests for file cache and transactions. - Added a few more tests for database - Fixed bug in DB where writes could happen even if exceptions were raised during a transaction. - `spack uninstall` now attempts to repair the database when it discovers that a prefix doesn't exist but a DB record does.	2016-08-09 00:24:54 -07:00
Todd Gamblin	2042e9a6d8	Fix bugs with sparse spec printing. - Make namespace, arch, and dependnecies show up in spec yaml only if they're set. - Lost some of this functionality with deptypes	2016-08-08 21:04:23 -07:00
Todd Gamblin	1339714eec	Restore text output in verbose mode.	2016-08-08 21:04:23 -07:00
Todd Gamblin	5d690c9270	Make compiler command test last until caching is fixed. - global compiler cache breaks tests that come after this one.	2016-08-08 21:04:23 -07:00
Todd Gamblin	e5743db9b9	Fix issues with import order in tests. - modules weren't set properly as attributes in parent modules	2016-08-08 21:04:23 -07:00
Todd Gamblin	d195576fba	WIP	2016-08-08 21:04:23 -07:00
Todd Gamblin	5e5024342f	Fix iterator invalidation issues.	2016-08-08 21:04:23 -07:00
Todd Gamblin	4de45c2684	fix scoping issue.	2016-08-08 21:04:23 -07:00
Todd Gamblin	ce6ac93abe	rename `virtual` module to `provider_index`	2016-08-08 21:04:23 -07:00
Todd Gamblin	1f5a21decf	Fix namespace support in Repo.get_pkg_class()	2016-08-08 21:04:23 -07:00
Todd Gamblin	ab049eca41	Faster key in FlagMap._cmp_key	2016-08-08 21:04:23 -07:00
Todd Gamblin	37fc258313	Remove vestigial methods from Package.	2016-08-08 21:04:23 -07:00
Todd Gamblin	faa0a0e4c3	Add a ProviderIndex cache. - Spack will check if the index needs updating, and will only parse all package files if it does. - Spack tries to parse as few package files as necessary.	2016-08-08 21:04:23 -07:00
Todd Gamblin	cf2f902b82	Make ProviderIndexes mergeable, so we can cache them per-repo.	2016-08-08 21:04:23 -07:00
Todd Gamblin	bf028990e7	Make ProviderIndex yaml-izable. - allow a provider index to be stored and re-read.	2016-08-08 21:04:23 -07:00
Todd Gamblin	025609c63f	More compact YAML formatting for abstract specs. - Don't add empty/absent fields to Spec YAML when they're not there.	2016-08-08 21:04:23 -07:00
Todd Gamblin	7aaad89ba9	Lazily evaluate all_package_names in repository.py - Don't need to list all packages unless we have to. - Only use the list of all packages for existence checks if we have generated it for some other purpose.	2016-08-08 21:04:23 -07:00
Adam J. Stewart	5d48c108a3	Only strip newline chars, not spaces	2016-08-08 15:02:05 -05:00
Glenn Johnson	20221ee3aa	Catch error for version in VCS This PR will catch the error where the url can not be determined from a VCS URL, such as git. It will print a message to the console and move on because it should not be a fatal error at this point in the process. This should fix #1459.	2016-08-05 11:16:43 -05:00
Todd Gamblin	6ab78eb88e	sbang filtering now works on non-writable files. (#1445 ) - sbang now changes mode to writable and restores mode if a file is not writable.	2016-08-04 10:46:45 -07:00
becker33	369b2ef01f	Merge pull request #1330 from suraia/fix-ascii-graph Fix graph command with ASCII output	2016-08-04 09:37:24 -07:00
Torbjörn Lönnemark	61b3ecb6d2	Fix flake8 issues	2016-08-04 16:28:14 +02:00
Torbjörn Lönnemark	a591e183bc	Fix incorrect indentation	2016-08-04 16:09:49 +02:00
Michael Kuhn	2bd1a51193	flake8 fixes	2016-08-04 13:07:33 +02:00
Michael Kuhn	1578a95982	Fix tests.	2016-08-04 13:07:33 +02:00
Michael Kuhn	7affaca321	Fix graph command with ASCII output.	2016-08-04 13:07:33 +02:00
James Riley Wynne III	f0609699ba	Added parens to %'s arguments. Fixes #1432	2016-08-03 17:16:04 -04:00
Kelly (KT) Thompson	46e9d85283	Cray: Fix a typo that could cause an infinite recursion when calling /env/cc. fixes #1428	2016-08-03 14:15:44 -06:00
becker33	7ae163d436	Merge pull request #1361 from epfl-scitas/features/module_token_expansion_in_environment module : token expansion in environment	2016-08-03 09:49:28 -07:00
Adam J. Stewart	941acef009	spack create should use setup_py() instead of python()	2016-08-02 12:20:28 -05:00
becker33	326b9838ed	Merge pull request #1423 from glennpj/fix_url Move archive_version setting to if block	2016-08-02 10:05:25 -07:00
Glenn Johnson	2929fb0a4d	Move archive_version setting to if block The archive_version variable should only get set if versions will be checked and that is only if there is a list_url in the package file. For VCS repos setting the variable triggers an error from web.py as it parses the default_fetcher object. This should fix #1422.	2016-08-02 11:54:09 -05:00
becker33	21158195fb	Merge pull request #1354 from paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant Bugfix/preferred variants do not recognise -variant	2016-08-02 09:15:06 -07:00
Gregory Becker	679ceabf36	fixed flake8 errors	2016-08-01 17:22:13 -07:00
Gregory Becker	31042e8ed1	further improved error message	2016-08-01 17:16:06 -07:00
Gregory Becker	2705f2c0e3	changed error raised in concretize compiler to provide better error message	2016-08-01 17:11:10 -07:00
becker33	c678a9e3da	Merge pull request #1417 from LLNL/features/combined-cray-platform-cleanup Removed vestigial cray_xc platform in favor of combined cray platform	2016-08-01 16:26:20 -07:00
Gregory Becker	0cf1f917d5	fixed architecture test	2016-08-01 16:17:31 -07:00
Mario Melara	0425f5d523	Add import statement Add missing import statement for join_path	2016-08-01 15:59:30 -07:00
Gregory Becker	0ce98d4d65	Removed vestigial cray_xc platform in favor of combined cray platform	2016-08-01 15:43:11 -07:00
becker33	7f43a7d134	Merge pull request #1376 from mpbelhorn/olcf/unified_cray_platform Olcf/unified cray platform	2016-08-01 15:40:11 -07:00
Matt Belhorn	661708b7fa	Fixes Flake8 indentation errors.	2016-08-01 17:27:33 -04:00
Matt Belhorn	ae167c09fc	Prefers `bash` over `sh`. Assuming a bash interactive environment will be correctly formed on login, we should prefer to probe the environment using a shell that reports itself as `bash` instead of `sh` which may not source files that set the environment modules in statements like: ``` case "$is" in bash) test -s /etc/bash.bashrc.local && . /etc/bash.bashrc.local ;; ksh) test -s /etc/ksh.kshrc.local && . /etc/ksh.kshrc.local ;; zsh) test -s /etc/zsh.zshrc.local && . /etc/zsh.zshrc.local ;; ash) test -s /etc/ash.ashrc.local && . /etc/ash.ashrc.local esac test -s /etc/sh.shrc.local && . /etc/sh.shrc.local ```	2016-08-01 17:17:24 -04:00
becker33	14d861a41c	Merge pull request #1414 from adamjstewart/fixes/filter_file Fix backup=True for filter_file	2016-08-01 14:10:59 -07:00
Matt Belhorn	e864d27641	Replaces bash-ism `source` for POSIX-compliant `.` Change is made in order to use `/bin/sh` on systems where `/bin/sh` is not simply an alias for `/bin/bash --norc`.	2016-08-01 17:04:09 -04:00
becker33	49e47966a8	Merge pull request #1357 from hartzell/patch-6 Fix doc for install_tree (cut/paste error)	2016-08-01 13:45:20 -07:00
becker33	630ff6871d	Merge pull request #1346 from glennpj/url_list_fetch Url list fetch	2016-08-01 13:37:57 -07:00
Adam J. Stewart	5b79f0d04a	Fix backup=True for filter_file	2016-08-01 15:35:02 -05:00
Glenn Johnson	19578d954f	Fix flake8 line length errors	2016-08-01 13:37:42 -05:00
Matt Belhorn	aaa5c9e8a4	Writes default module list to terminal when debugging.	2016-08-01 12:05:29 -04:00
Paul Hopkins	cca240c8f9	Add concretize_preferences tests	2016-08-01 16:18:11 +01:00
Matt Belhorn	dc7e0899a0	Invokes subshell without user init scripts.	2016-07-30 11:38:34 -04:00
Matt Belhorn	5e97eb5ec4	Obtains default modules from a clean subshell. The list of default environment modules is obtained by calling `module list -lt` from a subshell with a wiped environment. This allows `/etc/profile` and other init scripts to be fully sourced which should generally include loading the default modules. The list of default modules is then parsed for the first acceptable CPU target, assumed to be the back_end target.	2016-07-29 15:02:25 -04:00
Paul Hopkins	5eebb2defa	Use space characters to separate preferred variants from package name and each other	2016-07-29 13:02:47 +01:00
robertdfrench	eab56b71be	PEP8 Goodness	2016-07-27 13:11:24 -04:00
Matt Belhorn	3040381f03	Front-end unification for Cray systems. A platform to generically cover all Cray systems is introduced to avoid having specific platforms for each of XK (XE, XT), XC, and future systems using CrayPE and CNL. The platform searches for 'front_end' and 'back_end' targets, in order, from: * Environment variables 'SPACK_FRONT_END' and 'SPACK_BACK_END' * A spack configuration file 'targets.yaml' * Parsing `/etc/bash.bashrc.local` for first loaded CrayPE CPU target. If a back_end target is not found through one of these methods, an exception is raised. Otherwise, the back_end is set as the default target. The shell init script search is based on recommendations in Crayports case #144359. No automagic way of determining front_end targets has been found (to date) so if a front_end is not specified through configuration, it is ignored which should leave a spack instance in a consistant state.	2016-07-27 11:37:15 -04:00
Matt Belhorn	b1e6c58ff2	Adds __str__ method to CNL operating system class.	2016-07-27 11:25:23 -04:00
Matt Belhorn	4e6fdd12e2	Adds targets config file	2016-07-27 11:25:23 -04:00
alalazo	9c7b98dcc8	modules : handle dashes in environment variables	2016-07-26 09:03:17 +02:00
becker33	e4ced765f1	Merge pull request #1353 from epfl-scitas/qa/minor_cleanup qa : minor cleanup	2016-07-25 10:34:43 -07:00
alalazo	c6a05f4a7d	qa : flake8 issues fixes #1109	2016-07-25 18:22:09 +02:00
alalazo	3126ed5f21	modules : permit token expansion in configuration files	2016-07-25 18:10:27 +02:00
George Hartzell	d684b17c06	Fix doc for install_tree (cut/paste error) It looks like the docs for copy_tree were cut/paste from copy and still referred to installing a "file". This fixes that.	2016-07-25 08:45:44 -07:00
alalazo	5cfaa557d3	qa : flake8 issues	2016-07-25 10:19:58 +02:00
alalazo	23006d1195	spec : removed dead code	2016-07-25 09:05:50 +02:00
Glenn Johnson	b1e5ec0573	Make sure package has the `url` attribute. In addition to `list_url` make sure the package has the `url` attribute set before attempting to add urls from a list. This is to cover the case where there may be a `list_url` specified in tandem with a `url_for_version`.	2016-07-24 09:21:11 -05:00
Glenn Johnson	4f09e8c975	Only use list if list_url set This commit will make urls from list_url only checked if `list_url` is set in the package file. This makes more sense as there is no need to check for those if the attribute is not present. If `url` is present and `list_url` is not then it would result in the same url. If `url_for_version` is used then that will not work anyway.	2016-07-23 22:56:08 -05:00
Glenn Johnson	4181fd79cd	Fix flake8 errors related to lines Fixed the flake 8 errors that involved too many blank lines or not enough blank lines. Basically, all of the flake8 errors except line length errors.	2016-07-23 19:10:09 -05:00
Glenn Johnson	b51be2bb1b	Have fetch use list_url This PR allows archive file retrieval from urls derived from the `list_url` setting in a package file. This allows for continued retrieval of checksummed archive files even when they are moved to a new remote location when a package is updated upstream.	2016-07-23 19:09:58 -05:00
Adam J. Stewart	ebbcebac62	Use example deptypes in newly created packages	2016-07-22 13:55:00 -05:00
alalazo	00d7fd8e21	test_install : removed commented code	2016-07-22 18:14:36 +02:00
Gregory Becker	bcbe9c02da	Added cray wrapper names directory to spack_env_paths so the spack compiler wrapper will remove them from the environment (prevents hang)	2016-07-21 14:50:23 -07:00
Gregory Becker	1544f98ee0	fixed flake8 errors	2016-07-21 14:36:10 -07:00
Gregory Becker	f0d5317913	fixed	2016-07-21 14:11:34 -07:00
Gregory Becker	2ae7429b18	Bug fix for cray_xc platform	2016-07-21 14:04:22 -07:00
Todd Gamblin	098af17971	Merge pull request #1208 from paulhopkins/bugfix/github1196-specify-preferred-variants Bugfix/github1196 specify preferred variants	2016-07-21 08:36:19 -07:00
Paul Hopkins	00280936da	Flake8 fixes to ensure qa tests pass	2016-07-21 13:12:58 +01:00
Paul Hopkins	480fe9cb9a	Re-add documentation for variant preferences	2016-07-21 12:32:00 +01:00
Paul Hopkins	bd91dd9d6d	Allow users to supply preferred variants via packages.yaml	2016-07-21 12:32:00 +01:00
Michael Kuhn	4e1f86881a	Update documentation for recursive module loading.	2016-07-21 13:15:10 +02:00
Glenn Johnson	16f67b5bb1	Setup environment for Intel Parallel Studio Set up the environment for the Intel compilers and tools. This commit does the following: - Unset variables that were incorrect from the auto guess prefix inspections. - Add a RemovePath environment_modifications_formats for dotkit. - Set the module environment variables appropriate for the different variants. - Change the component logic so that the '+all' variant works. It was getting split by letter and leaving COMPONENTS empty. - Added a variant checking function. - Added NONRPM_DB_DIR to the silent.cfg so that the product database goes to the installation directory. - With the product database in prefix the code to remove the product database file from the home directory is no longer needed and was removed. - Reformat the 'tools' variant description. There are probably more variables needed for the '+tools' for the 'professional' product version but I do not have access to that.	2016-07-20 19:54:35 -05:00
alalazo	b92deda41b	spack setup : work as in documentation for openjpeg	2016-07-20 22:27:01 +02:00
Todd Gamblin	8856a226c7	Merge pull request #1277 from mathstuf/special-deptypes deptypes: support special deptypes by string	2016-07-20 13:15:57 -07:00
Gregory Becker	eda1176ba7	added package as argument to setup_platform_environment	2016-07-20 12:26:31 -07:00
Gregory Becker	6983c1d30d	Documented linker default	2016-07-20 12:04:00 -07:00
alalazo	40cb314638	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: lib/spack/spack/package.py	2016-07-20 21:02:19 +02:00
Gregory Becker	412618d531	fixed flake errors	2016-07-20 11:52:16 -07:00
Gregory Becker	7db4170062	removed commented-out code	2016-07-20 11:36:47 -07:00
Gregory Becker	f4fb9a0771	Set default link type to dynamic on cray. Includes hooks for platform-based environment changes	2016-07-20 11:35:13 -07:00
Gregory Becker	106147716a	fixed flake errors	2016-07-20 11:00:56 -07:00
Gregory Becker	0d18f7249c	fixed flake errors	2016-07-20 10:50:18 -07:00
Gregory Becker	26d1ddc176	Improved cray_xc detection bug fix	2016-07-20 10:28:38 -07:00
Gregory Becker	4c506b36c5	Improved cray_xc detection	2016-07-20 10:25:07 -07:00
Todd Gamblin	01a361d637	Merge pull request #1288 from LLNL/features/cray_compiler_names Let packages call use_cray_compilers() in install to get , etc set to…	2016-07-20 09:45:36 -07:00
Todd Gamblin	6501cba5a7	Merge pull request #1309 from LLNL/features/spack-defaults Add "default" configuration scope.	2016-07-19 23:48:12 -07:00
Todd Gamblin	26480f14f9	Add "default" configuration scope. - Default scope is versioned with spack and can be overridden by site or user config. - Default scope provides sensible default concretization preferences for all of Spack. - per-platform concretization scope can be added later (to force a particular MPI on, e.g., Cray systems)	2016-07-19 17:10:17 -07:00
Todd Gamblin	dd7bd4f320	Make frontend OS on Cray machines a proper linux distro.	2016-07-19 14:59:04 -07:00
Ben Boeckel	1315753e70	deptypes: support special deptypes by string	2016-07-19 16:26:18 -04:00
alalazo	acfeb5d043	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh Conflicts: lib/spack/spack/test/__init__.py	2016-07-19 09:05:27 +02:00
becker33	013cfafe57	Merge pull request #1229 from suraia/fix-preferred-providers Fix preferred providers.	2016-07-18 16:47:08 -07:00
Gregory Becker	218fc602fa	Let packages call use_cray_compilers() in install to get , etc set to cray names	2016-07-18 15:43:21 -07:00
Todd Gamblin	4a276807b1	Merge pull request #1245 from LLNL/features/cray-detection-improvement The /cray_home directory is more consistent than the /cray/craype dir…	2016-07-18 14:36:08 -07:00
Todd Gamblin	51834773b4	Merge pull request #851 from mathstuf/safer-bootstrap bootstrap: fall back to the default upstream URL	2016-07-18 14:25:29 -07:00
Gregory Becker	46ee4a3a53	Using cc -craype-verbose to get cray platform type	2016-07-18 14:25:17 -07:00
Todd Gamblin	653f25d676	Merge pull request #1171 from adamjstewart/features/octave Allow spack create to automatically detect octave build system	2016-07-18 12:32:32 -07:00
Michael Kuhn	19df1ea79d	flake8 fix	2016-07-18 17:53:26 +02:00
Paul Hopkins	a46138dea9	More flake8 fixes for package-list	2016-07-18 13:59:58 +01:00
Adam J. Stewart	89c9bec81e	Flake8	2016-07-18 07:45:28 -05:00
Adam J. Stewart	262ab40188	Update build_system_guess test with new class name	2016-07-18 07:45:28 -05:00
Adam J. Stewart	199a8af7cc	Flake8	2016-07-18 07:45:28 -05:00
Adam J. Stewart	e9f42c1a94	Allow spack create to automatically detect octave build system	2016-07-18 07:45:27 -05:00
alalazo	a96eb7096d	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh Conflicts: share/spack/setup-env.sh	2016-07-18 14:12:47 +02:00
Paul Hopkins	cc027148eb	Flake8 fixes in cmd/package-list.py file	2016-07-18 12:52:23 +01:00
Paul Hopkins	2b3ba850b3	Fix spack package-list to correctly handle deptypes	2016-07-18 12:51:58 +01:00
Todd Gamblin	b3789a4693	Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas Pkg/hypre trilinos blas	2016-07-18 03:06:37 -07:00
Todd Gamblin	cddaba8add	flake8 fixes. - package.py - spec.py - test/architecture.py	2016-07-18 02:34:24 -07:00
Todd Gamblin	192369dd2b	Fix #1265 : Errors in spack reindex - Consolidated code to read spec.yaml and database index.yaml into one method (`read_yaml_dep_specs()`) in spec.py. - Code understands old hash format, tuple format, and dicts for dep specs, for backward compatibility. - Spec YAML now uses a dict with keys to represent dep specs (this is more future-proof). - Dep specs no longer contain !!py-tuple entries in YAML (only lists properly YAML-ize) - bump database version.	2016-07-18 01:19:07 -07:00
Todd Gamblin	73f10c9363	Fix broken `spack info` command after build dep merge. - Added a method to get dependencies of particular types from Package - Fixed info command.	2016-07-18 01:19:07 -07:00
Todd Gamblin	cdc2ebee90	Better error messages for `spack reindex`.	2016-07-18 01:14:47 -07:00
alalazo	6c00a13ed5	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: var/spack/repos/builtin/packages/swiftsim/package.py	2016-07-18 08:49:24 +02:00
Todd Gamblin	117743863e	Merge pull request #1252 from hartzell/patch-5 Fix format of explanation of an example & question	2016-07-17 21:20:02 -07:00
Todd Gamblin	0e8bf79fa4	Merge pull request #1240 from epfl-scitas/truncated_documentation doc : fixes #1239	2016-07-17 20:59:36 -07:00
alalazo	dc671ad037	docs : substituted None with empty cell	2016-07-17 22:17:52 +02:00
Denis Davydov	9ea4f80f15	flake8 fixes	2016-07-16 07:58:51 +02:00
Denis Davydov	992250ddea	add to_lib_name() to get library name from a path	2016-07-16 07:24:05 +02:00
Michael Kuhn	d61190c3ff	Explicitly request zmpi in module blacklist test.	2016-07-16 00:48:04 +02:00
becker33	63101e9914	Merge pull request #1261 from adamjstewart/features/create-deptype Automatically add deptype to newly created packages	2016-07-15 15:10:10 -07:00
Adam J. Stewart	8c1cc44522	Automatically add deptype to newly created packages	2016-07-15 16:43:25 -05:00
becker33	e822257565	Merge pull request #1251 from hartzell/patch-4 Minor typo fix	2016-07-15 13:51:02 -07:00
alalazo	833b0ac282	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py	2016-07-15 11:03:02 +02:00
alalazo	893a5565fe	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py	2016-07-15 11:02:55 +02:00
alalazo	1f3cb2b93c	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh Conflicts: lib/spack/spack/cmd/module.py	2016-07-15 10:37:27 +02:00
Ben Boeckel	5d152edcaf	spec: assign namespaces to the full dependency DAG	2016-07-14 16:33:48 -04:00
Ben Boeckel	faa3d43d9c	package: mention the package that is no concrete	2016-07-14 16:33:38 -04:00
Ben Boeckel	45c675fe7f	spack: introduce dependency types deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.	2016-07-14 16:21:46 -04:00
Ben Boeckel	bae97d17d0	test: use file:// url for git repos	2016-07-14 16:21:45 -04:00
Ben Boeckel	6d2ec9baf7	test/stage: use os.path.realpath on the test paths When var/spack/stage is a symlink, the tests fail since realpath is used on the resulting path, but not the original path, so the string compare fails. Smarter path testing might be a better option.	2016-07-14 16:21:45 -04:00
Ben Boeckel	b4682c8ca3	directory_layout: fix error path when specs conflict	2016-07-14 16:21:45 -04:00
Ben Boeckel	e275b567eb	typos: fix some typos	2016-07-14 16:21:45 -04:00
George Hartzell	3e718920d1	Remove extraneous letter 'p' It got in there by mistake, now it's gone.	2016-07-14 09:40:47 -07:00
George Hartzell	3051c3d71d	Fix format of explanation of an example & question This list was not formatted correctly on [the ReadTheDocs site](http://software.llnl.gov/spack/basic_usage.html#specs-dependencies). I'm not a .rst expert, but I think that it was improperly indented. The example includes an `arch=...` string but arch is not listed in the valid compiler flag specifiers or architecture specifiers. Should it be, or is it considered an "optional variant specifier?	2016-07-14 08:31:07 -07:00
George Hartzell	e052aaf44d	Minor typo fix the packages that depends on => the packages that depend on	2016-07-14 08:19:32 -07:00
alalazo	b8fccb5f61	CMakePackage : added hook for roo CmakeLists.txt, removed duplicated code from build_environment.py	2016-07-14 12:04:24 +02:00
alalazo	1ecea4c2f1	log : refactored acquire and release semantic to meet the context manager protocol	2016-07-14 09:34:01 +02:00
alalazo	00b8e0b567	package.py : joined and simplified try/except blocks in do_install	2016-07-14 09:11:44 +02:00
Michael Kuhn	5ffc50732b	flake8 fixes	2016-07-13 23:05:08 +02:00
alalazo	9d66b85492	log : changed semantic for start / join (now it's explicit)	2016-07-13 22:51:12 +02:00
alalazo	90b131260b	log : changed semantic for start / join (now it's explicit)	2016-07-13 22:50:39 +02:00
alalazo	7cedd620f1	package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples	2016-07-13 17:36:06 +02:00
alalazo	0e2afedb7f	doc : fixes #1239	2016-07-13 12:43:48 +02:00
alalazo	ad16830f71	log : added timeout to avoid deadlocks on daemon join	2016-07-13 11:20:23 +02:00
alalazo	468a6431f9	package.py : workaround for a known bug that was not fixed in python 2.6 https://bugs.python.org/issue1515	2016-07-13 11:08:19 +02:00
alalazo	5cc59507f7	package.py : hdf5 and lzo have examples of run_tests	2016-07-13 09:27:09 +02:00
alalazo	97c2224cd6	package.py : extra arguments, fixed inheritance issue - added attribute to hold extra arguments in PackageBase instances - fixed registration from within packages - examples : hdf5, lzo	2016-07-13 09:27:09 +02:00
alalazo	813cb032c4	package.py : updated logic to log.py rework Conflicts: lib/spack/spack/package.py	2016-07-13 09:27:09 +02:00
alalazo	513cdd580e	do_install : can stop at an arbitrary phase Now uses a StopIteration exception as a signal	2016-07-13 09:27:09 +02:00
alalazo	9af964a6d6	log_output : moved from os.fork to multiprocessing.Process	2016-07-13 09:27:09 +02:00
alalazo	440e71ff13	build_environment : moved from os.fork to multiprocessing.Process	2016-07-13 09:27:09 +02:00
alalazo	857d7bfe0f	do_install : can stop at an arbitrary phase The mechanism would be simpler if we could leverage exceptions to raise signals. Unfortunately forking does not permit to do so.	2016-07-13 09:27:09 +02:00
alalazo	a43c63f149	package : added EditableMakefile Modifications : - added EditableMakefile to PackageBase subclasses - astyle modified as an example - preliminary hook to stop at a certain phase of install	2016-07-13 09:27:09 +02:00
alalazo	8f75d34331	package : added a stub for AutotoolsPackage, examples in szip and swiftsim	2016-07-13 09:27:09 +02:00
alalazo	8ed028e2d6	package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases	2016-07-13 09:27:09 +02:00
alalazo	a36f3764af	package : added hooks for generic phases	2016-07-13 09:27:09 +02:00
Todd Gamblin	27aa265abd	Merge pull request #1211 from hartzell/patch-3 Typo: verison -> version	2016-07-12 13:53:52 -07:00
Michael Kuhn	b7d9b58cc5	Fix preferred providers.	2016-07-12 19:57:08 +02:00
Todd Gamblin	283d621b6e	Add documentation for fetching submodules.	2016-07-11 13:27:37 -07:00
Todd Gamblin	86b1b28906	Add `submodules` option for git fetching.	2016-07-11 13:27:35 -07:00
alalazo	5f861e075c	Merged develop into branch	2016-07-11 20:57:55 +02:00
Todd Gamblin	7f6541ef02	Merge pull request #1190 from davydden/feature/version_dev add special treatment of @develop version	2016-07-11 11:31:54 -07:00
Denis Davydov	306e601d4e	document special treatment of development version	2016-07-11 19:50:33 +02:00
George Hartzell	fbaff33f3f	Typo: verison -> version	2016-07-11 09:44:20 -07:00
George Hartzell	1682257b35	Typo: verison -> version	2016-07-11 09:42:49 -07:00
Denis Davydov	b29d5e6032	add special treatment of develop version	2016-07-10 14:21:52 +02:00
Todd Gamblin	b0f4052bd8	Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes --run-tests install argument and petsc fixes	2016-07-09 12:10:16 -07:00
Todd Gamblin	c086ccdab6	Merge pull request #1200 from glennpj/lowpackname Have ``spack create`` default to lower case name for package	2016-07-08 13:29:52 -07:00
Glenn Johnson	33d0660abc	Have ``spack create`` default to lower case name This will create package directories with lower case names when using `spack create`. The documentation was modified to reflect this.	2016-07-08 15:11:37 -05:00
George Hartzell	1b9e8a0e65	Fix typo Comamnds -> Commands	2016-07-08 11:01:08 -07:00
Todd Gamblin	b9148b1751	Merge pull request #1125 from NERSC/docs/cray Update documentation for use on Cray	2016-07-06 15:06:20 -07:00
Gregory Becker	403a55afb2	Minor bug fix	2016-07-06 14:54:25 -07:00
Gregory Becker	663b30b3e8	Update target autodetection for linux platform	2016-07-06 14:54:22 -07:00
Denis Davydov	081918d71a	add --run-tests argument for install()	2016-07-06 22:45:30 +02:00
Todd Gamblin	03fdb2058a	Merge pull request #1176 from epfl-scitas/features/version_minor_improvements spack.Version : like a duck!	2016-07-06 09:01:19 -07:00
alalazo	9b926a480f	qa : flake8 issues	2016-07-06 17:03:32 +02:00
alalazo	780a57367d	version : modified __getitem__ to return either an item or a Version instance + unit tests	2016-07-06 17:00:48 +02:00
alalazo	32e086f44a	version : modified __repr__ to return a string representation of the object + unit tests	2016-07-06 15:24:10 +02:00
William Killian	1f64f08cb3	(bugfix) fixed typo of spec --> raw_spec	2016-07-05 13:32:37 -07:00
Todd Gamblin	d687e332ad	Fix compile bugs for gcc on Mac OS X with macports. - add macports to things that are cleaned out of the environment. - linker incompatibilities cause issues with packages like OpenSSL. - also clean up NOQA stuff in OpenSSL	2016-07-04 22:59:02 -07:00
Todd Gamblin	690937f953	Add `--dirty` option to `spack install`. - Allow install to be run without cleaning the environment.	2016-07-04 22:58:01 -07:00
Todd Gamblin	6bac1598f6	Merge branch 'fix-archive' of https://github.com/mwilliammyers/spack into mwilliammyers-fix-archive	2016-07-04 21:35:33 -07:00
Todd Gamblin	890df7153a	Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage	2016-07-04 00:27:32 -07:00
alalazo	6d988dde8d	qa : fixed flake8 issues	2016-07-02 12:54:36 +02:00
alalazo	3100c5948a	module : added unit tests	2016-07-02 12:14:30 +02:00
Glenn Johnson	31e9ded768	Remove more variables from build environment Remove the LIBRARY_PATH and CPATH environment variables before building a package.	2016-07-01 20:59:14 -05:00
alalazo	d10fceaacc	spack commands : refactoring of cli arguments and common utiities. Implemented suggestions on `spack module loads` - Common cli arguments now are in their own module - Moved utilities that can be reused by different commands into spack.cmd.__init__.py - Modifications to `spack module loads`	2016-07-01 23:06:07 +02:00
alalazo	f0f7b23c8a	module : added rm subcommand, encapsulated logic for constraints in argarse.Action subclass	2016-07-01 14:27:55 +02:00
alalazo	fe4ef286f2	module : added the command 'load-list'	2016-07-01 12:38:04 +02:00
Mario Melara	56adb5d9a5	Change arch spec and fix typo Changed old arch specs to new arch specs. Changed intallation to installation	2016-06-30 17:03:07 -07:00
Mario Melara	16a4c49f98	Remove Cray examples of config files Removed examples of Cray config files and added them under Spack on Cray. Any users of Cray can just look at the Spack on Cray section to get an idea of what's used. If they want more information they can click links to the sections.	2016-06-30 17:01:18 -07:00
Mario Melara	d784d561fc	Add more documentation fix arch spec Added more documentation for Spack on Cray. Also fixed the architecture spec to be linux-debian7-x86_64 since it was reversed in the previous commit.	2016-06-30 16:59:36 -07:00
Massimiliano Culpo	6793a54748	--prefix : defaults to empty string	2016-06-30 23:18:32 +02:00
Massimiliano Culpo	ba1ada5424	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh_reworking Conflicts: lib/spack/spack/cmd/module.py	2016-06-30 22:19:46 +02:00
alalazo	a770151359	module : minor improvement to output formatting	2016-06-30 16:49:24 +02:00
Elizabeth Fischer	6327877a6f	PEP-8	2016-06-30 09:19:57 -04:00
Elizabeth Fischer	50ac98bc04	Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage # Conflicts: # lib/spack/docs/packaging_guide.rst # lib/spack/spack/package.py Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently). Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`. This got added back in from develop.	2016-06-30 09:13:24 -04:00
alalazo	ba87937fff	module : added detection of file name clashes	2016-06-30 13:44:49 +02:00
alalazo	1b7eedbb7d	modules.yaml : added hash_length as a new keyword config : - added `hash_length` under the modules section EnvModules : - take into consideration hash_length when constructing `file_name` - added logic to warn and skip module file writing in case of file name clash	2016-06-30 12:56:47 +02:00
Todd Gamblin	0e422dec8c	Merge pull request #1141 from adamjstewart/fixes/license_docs Fix missing code blocks in licensed software documentation	2016-06-30 02:22:38 -07:00
Todd Gamblin	bc2fa76588	Merge pull request #1146 from scheibelp/features/doc-caching added documentation for automatic caching of resources fetched during installs	2016-06-30 02:13:16 -07:00
Todd Gamblin	30d083c6b7	Merge branch 'efischer/160401-RecursiveModules' of https://github.com/citibeth/spack into citibeth-efischer/160401-RecursiveModules	2016-06-30 02:12:00 -07:00
Peter Scheibel	cfd380d514	added documentation for automatic caching of resources fetched during installs	2016-06-29 18:23:40 -07:00
Ben Boeckel	5f720f9b7c	flake8: appease the style checker	2016-06-29 14:49:58 -04:00
Ben Boeckel	e3e94f0ac9	bootstrap: name the current branch the same as the remote	2016-06-29 14:49:19 -04:00
Ben Boeckel	89bf5f4045	bootstrap: allow using alternate remotes If you want to bootstrap from a fork, the `--remote` option may be used to select it. Also limit the branches to 'develop' and 'master' if the remote is 'origin' since those are the actual integration branches used (other branches on 'origin' are just PR branches).	2016-06-29 14:49:19 -04:00
Ben Boeckel	7ec191ce0b	bootstrap: use the currently checked out branch The `master` branch is not really where Spack development happens, so default to it, but use the user's current branch if it's there.	2016-06-29 14:49:19 -04:00
Ben Boeckel	6f69c01915	bootstrap: fall back to the default upstream URL Fixes #352.	2016-06-29 14:49:19 -04:00
Adam J. Stewart	06de8c56af	Fix missing code blocks in licensed software documentation	2016-06-29 12:35:38 -05:00
Todd Gamblin	eb388306fd	Merge pull request #1112 from adamjstewart/features/dependencies Make spack create automatically add dependencies for build system	2016-06-29 07:57:33 -07:00
Todd Gamblin	c996632113	Add spack purge --cache to purge local archive cache.	2016-06-29 01:41:55 -07:00
Todd Gamblin	bc1320d83a	Merge branch 'features/cache-archives' of https://github.com/scheibelp/spack into scheibelp-features/cache-archives	2016-06-29 00:57:26 -07:00
alalazo	b71d430af6	module : can regenerate single module files, homogenized cli options spack module : - refresh accepts a constraint - find and refresh share common cli options - ask for confirmation before refreshing - deleting the module file tree is now optional	2016-06-28 19:28:18 +02:00
mwilliammyers	0384794912	Fix #1019 - cannot create mirror for git spec	2016-06-27 16:00:38 -06:00
Mario Melara	26325fe812	Add missing link to external packages Adding missing _sec-external_packages to link with external packages page	2016-06-27 14:35:56 -07:00
Mario Melara	7fb45e4bfd	Update documentation for use on Cray Updating how to use compilers.yaml on Cray as well as setting up external packages. Also includes what needs to be set up for usage on Cray and explains what needs to be done to get Spack properly working. Also explain the architecture spec and what it does.	2016-06-27 13:52:48 -07:00
Todd Gamblin	3ea9d1e665	Merge pull request #1122 from LLNL/bugfix/newarch-sys_type Bugfix/newarch sys type	2016-06-27 10:07:03 -07:00
Adam J. Stewart	798dabc8f2	Forgot the unknown key/value pair	2016-06-27 09:01:53 -05:00
Todd Gamblin	0185226042	Merge pull request #1121 from LLNL/bugfix/module-directory-pollution Make MockPackagesTest use a different module location.	2016-06-27 02:25:32 -07:00
Todd Gamblin	99c3ed56fa	Add new sys_type method that prints out the full arch descriptor.	2016-06-27 02:19:26 -07:00
Todd Gamblin	305d5698df	Rename spack.architecture.sys_type() to spack.architecture.platform()	2016-06-27 02:19:08 -07:00
Todd Gamblin	a15aee5d8e	Make MockPackagesTest use a different module location. - ensures anything tests create is blown away.	2016-06-27 01:22:03 -07:00
Todd Gamblin	b4c36164b5	Fixes #760 : spack test leaves builtin.mock packages in DB - install_layout was redirected by the install test, but not the DB. - redirect the DB now, as well.	2016-06-27 00:55:16 -07:00
Todd Gamblin	73213ac59d	Merge pull request #984 from epfl-scitas/module_file_explicit_load module files : explicit load and mnemonic suffixes	2016-06-26 23:33:48 -07:00
Todd Gamblin	19b69ce3a5	Merge pull request #1097 from citibeth/efischer/160622-DBErrors Improved Spack database errors to help users fix them.	2016-06-26 22:45:44 -07:00
Todd Gamblin	ece72e5337	Merge pull request #1030 from opoplawski/external Remove last two remaining from external imports	2016-06-26 22:41:58 -07:00
Todd Gamblin	8f28df1d14	Merge pull request #1094 from epfl-scitas/documentation/remove_packages_yaml_inconsistencies packages.yaml : removed references to a never implemented feature	2016-06-26 22:37:43 -07:00
Todd Gamblin	30993357d7	Merge pull request #1105 from adamjstewart/fixes/filter_file Fix backup logic in filter_file	2016-06-26 22:33:09 -07:00
Adam J. Stewart	ea88d9cfe9	Make spack create automatically add dependencies for build system	2016-06-24 16:43:31 -05:00
Todd Gamblin	055f7f4ab6	Add package_dir method to `package.py`.	2016-06-24 12:33:53 -07:00
Adam J. Stewart	71a297f121	Fix backup logic in filter_file	2016-06-23 16:44:41 -05:00
Todd Gamblin	27e9bc6d02	Make sbang handle lua - use --! instead of #! for patched lua scripts.	2016-06-23 00:03:23 -07:00
Elizabeth Fischer	8f846d507d	Added --prefix to module command.	2016-06-22 15:36:04 -04:00
Elizabeth Fischer	10810482bc	Update database.py PEP8	2016-06-22 14:03:32 -04:00
Elizabeth Fischer	ffe9e77e36	Improved Spack database errors to help users fix them.	2016-06-22 12:11:09 -04:00
Robert.French	ff3e56cf9a	Import which from spack.util.executable; Fixes #1095	2016-06-22 15:25:32 +00:00
alalazo	f29b55957a	documentation : removed references to never implemented features	2016-06-22 17:08:02 +02:00
Todd Gamblin	58cff1290d	Make environment test less sensitive to user config files.	2016-06-21 00:19:28 -07:00
Todd Gamblin	0521b9bb32	Fix merge error.	2016-06-21 00:08:12 -07:00
Todd Gamblin	f18e1a9371	Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera	2016-06-20 23:53:48 -07:00
Todd Gamblin	3f90fee614	Merge pull request #1085 from NERSC/bugfix/compiler_find Bugfix/compiler find and gfortran fix.	2016-06-20 23:46:13 -07:00
Todd Gamblin	70a25c4587	Change --insensitive to --sensitive in `spack list`	2016-06-20 17:17:25 -07:00
Todd Gamblin	cbd5a0a6e3	Merge branch 'list-ext' of https://github.com/trws/spack into trws-list-ext	2016-06-20 17:13:32 -07:00
Todd Gamblin	db81a74d66	Merge pull request #939 from davydden/docs/blas_lapack document blas and lapack usage in packages	2016-06-20 17:11:09 -07:00
Todd Gamblin	a3431c5a73	Merge pull request #1047 from epfl-scitas/source_diffs_in_environment_modifications feature : construct environment modifications sourcing files	2016-06-20 16:56:30 -07:00
Mario Melara	d515877d91	Add init_config args in compilers/__init__	2016-06-20 16:20:52 -07:00
Mario Melara	4c4f3e9747	Add init_config to compiler_find method	2016-06-20 16:20:33 -07:00
alalazo	5aa3131385	qa : fixed flake8 issues	2016-06-20 21:11:33 +02:00
alalazo	b86e3047f3	openmpi : revert part of #1079 (OpenMPI can be built without fortran) Building OpenMPI without fortran is possible, and was already handled. Raising an install error we effectively renounce at clang+OpenMPI. build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found	2016-06-20 20:46:11 +02:00
Tom Scogland	45482187b4	one more typo issue	2016-06-20 11:42:35 -07:00
Tom Scogland	f6aa864bc4	adding quotes to make sure the glob is interpreted correctly	2016-06-20 11:41:36 -07:00
Tom Scogland	ac728d3e60	fixing capitol->capital typos	2016-06-20 11:38:39 -07:00
Tom Scogland	6180e6c047	automatic case-insensitive like smartsearch, docs New documentation for the new options, also case insensitive by default unless the user includes an upper-case character in their pattern.	2016-06-20 11:33:56 -07:00
Mario Melara	6fb7b0fcf7	Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find Forgot to pull branch changes before	2016-06-20 10:59:28 -07:00
Mario Melara	88888f5ba0	Got rid of unnecessary module arg	2016-06-20 10:58:20 -07:00
Mario Melara	1303b5a6a9	Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config	2016-06-20 10:57:58 -07:00
Mario Melara	fe30113502	Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work	2016-06-20 10:57:10 -07:00
Tom Scogland	0377f3580b	switching argument naming	2016-06-20 10:53:19 -07:00
Adam J. Stewart	aa86488fd9	Flake8	2016-06-20 12:47:17 -05:00
Todd Gamblin	42ff1aaa75	Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup do not create shebang.bak file	2016-06-20 10:45:42 -07:00
Todd Gamblin	c09111bbef	Merge pull request #1053 from davydden/pkg/dealii_suite_update update Petsc, Slepc, Trilinos, Superlu-dist and deal.II	2016-06-20 10:32:52 -07:00
Adam J. Stewart	be407f531e	Move around extension logic	2016-06-20 12:24:45 -05:00
Adam J. Stewart	28b2e36230	Add ctest executable	2016-06-20 12:24:45 -05:00
Adam J. Stewart	afff40e584	Flake8 fix for R templates	2016-06-20 12:24:45 -05:00
Adam J. Stewart	5dfc2052bd	Flake8 change	2016-06-20 12:24:45 -05:00
Adam J. Stewart	98d03c74e1	Add support for less common compression schemes	2016-06-20 12:24:45 -05:00
Adam J. Stewart	5a55bb3f8d	Modify R installation template	2016-06-20 12:24:45 -05:00
Adam J. Stewart	79fae306f6	Add extensions for Python/R and more configurable install	2016-06-20 12:24:45 -05:00
Adam J. Stewart	9500f2718b	More Flake8	2016-06-20 12:24:45 -05:00
Adam J. Stewart	a21e845ce7	Flake8	2016-06-20 12:24:45 -05:00
Adam J. Stewart	2220784eda	Add scons support, .zip support, and Cantera package	2016-06-20 12:24:45 -05:00
Peter Scheibel	1dc62e8a19	Merge branch 'develop' into features/cache-archives	2016-06-20 10:16:02 -07:00
Todd Gamblin	ce105e9bbe	Merge branch 'bugfix/compiler_find' into develop	2016-06-20 09:34:25 -07:00
Todd Gamblin	84e21703bd	Test no longer assumes compilers exist in /usr. - makes a fake gcc instead, and tests that.	2016-06-20 09:28:39 -07:00
Mario Melara	64c83638ff	Adding test to list of test_names	2016-06-18 11:11:46 -07:00
Mario Melara	15e6b88a8b	Adding new tests for compiler command for spack's test suite	2016-06-18 10:51:38 -07:00
Mario Melara	36275f8e6e	More clean up of init_config, also no need for a different find_compilers function.	2016-06-18 10:50:55 -07:00
Mario Melara	ccb62b4620	Getting rid of no longer used init_config arg	2016-06-18 10:49:39 -07:00
Todd Gamblin	f9efb746d7	Merge pull request #1032 from eschnett/eschnett/cc-quotes Add quotes around file name	2016-06-18 08:57:18 -07:00
alalazo	9e0c20c794	environment : filter the current environment Previously only the environment obtained after sourcing the file was filtered. This caused the appeareance of spurious unset commands in the list.	2016-06-18 13:39:08 +02:00
alalazo	a17d1efe7c	Merge branch 'develop' of https://github.com/LLNL/spack into features/source_diffs_in_environment_modifications Conflicts: lib/spack/spack/test/environment.py	2016-06-18 13:31:29 +02:00
alalazo	670669ef80	qa : fixed flake8 issues	2016-06-18 13:10:35 +02:00
alalazo	a33077b77f	unit tests : fixed test_alter_environment	2016-06-18 13:07:14 +02:00
alalazo	51cf847647	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_file_explicit_load Conflicts: lib/spack/spack/test/modules.py	2016-06-18 13:06:37 +02:00
Mario Melara	8af1c5fc8f	Merge remote-tracking branch 'upstream/develop' into develop "Updating NERSC branch"	2016-06-18 00:52:06 -07:00
Mario Melara	c703bfb54d	Got rid of init_config flag since we don't need it. Instead we update the cache config if there are any changes	2016-06-18 00:48:08 -07:00
Todd Gamblin	4569df025e	Merge pull request #1060 from mathstuf/no-break-long-words tty: do not break long words	2016-06-17 14:51:26 -07:00
Todd Gamblin	d7f48e1ff0	Merge pull request #1061 from mathstuf/reindex-preserve-explicit reindex: preserve 'explicit' flags	2016-06-17 14:29:47 -07:00
Todd Gamblin	0bbbfc2ef7	Merge pull request #946 from LLNL/features/intel2 Intel software packages and license enhancements	2016-06-17 14:28:39 -07:00
Tom Scogland	8770f2a0ea	fixing last flake8 issue	2016-06-17 13:42:27 -07:00
Tom Scogland	0743ef4d0b	fixing flake8 issues	2016-06-17 13:32:28 -07:00
Tom Scogland	a4ac99877a	cmd/list: adding description search and glob by default	2016-06-17 12:00:35 -07:00
Mario Melara	fe5eec5230	'find and 'add' are options for adding compilers via command line	2016-06-17 09:16:03 -07:00
Mario Melara	df84fe0b58	Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter.	2016-06-16 18:10:38 -07:00
Todd Gamblin	005827ab23	Replace 2.6-incompatible skipIf with a conditional. - skipIf doesn't work with Python 2.6.	2016-06-16 12:12:29 -07:00
Todd Gamblin	f60ae61652	remove dead code, cleanup.	2016-06-16 10:44:15 -07:00
Todd Gamblin	8867adf942	simplify instance check.	2016-06-16 10:43:36 -07:00
Todd Gamblin	c7dfa1699a	rename Mac OS X to macos	2016-06-16 10:43:12 -07:00
Mario Melara	6b03770602	Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not.	2016-06-16 09:44:37 -07:00
Todd Gamblin	88b73bacdb	Merge branch 'features/newarch' into develop Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py	2016-06-16 03:03:26 -07:00
Todd Gamblin	17b868381f	Fixes #460 : Do not show variants by default in spack find. This does two things: 1. By default `spack find` no longer shows variants. You have to supply `-v` to get that 2. This improves the `colify` implementation so that it no longer pads the rightmost column. This avoids the issue where if one spec was too long in the output, all specs would have space padding added to that width, and it would look like the output of `spack find` was double spaced. This no longer happens -- the one bad line wraps around and the other lines are now single-spaced when you use `-v` with boost.	2016-06-16 02:55:33 -07:00
Todd Gamblin	88b671f8b1	Just call old os "unknown"	2016-06-16 02:06:19 -07:00
Todd Gamblin	f3d6818d5c	be more tolerant when parsing new specs.	2016-06-16 00:55:39 -07:00
Todd Gamblin	c90cc465f5	Add `__contains__` to arch to satsify old packages.	2016-06-16 00:54:59 -07:00
Gregory L. Lee	d4df4375d5	removed unused import per flake8 report	2016-06-15 20:32:08 -07:00
Gregory L. Lee	1724ff5658	do not create shebang.bak file	2016-06-15 20:21:02 -07:00
Gregory Becker	3fcd54203c	two minor fixes	2016-06-15 16:44:38 -07:00
Gregory Becker	2fc9ac4036	Two minor fixes	2016-06-15 16:39:39 -07:00
Ben Boeckel	716f12dd58	reindex: preserve 'explicit' flags Look up in the old database whether the spec was explicit or not and preserve it into the new database. Fixes #1050.	2016-06-15 12:48:40 -04:00
Denis Davydov	3d3a26cd9a	flake8 fixes for filesystem.py	2016-06-15 18:31:10 +02:00
Ben Boeckel	36decbfa69	tty: do not break long words These "words" tend to be file paths which are best left unbroken. Fixes #1057.	2016-06-15 12:22:35 -04:00
Denis Davydov	a860a3d614	superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version	2016-06-15 18:21:13 +02:00
Massimiliano Culpo	30c9d976f6	environment : added more logic to treat append and prepend path	2016-06-12 18:54:56 +02:00
alalazo	5300ffac7f	qa : fixed flak8 checks	2016-06-12 15:11:26 +02:00
alalazo	a6681f2d7f	environment modules : added function to construct them from source files	2016-06-12 15:06:17 +02:00
alalazo	3737169450	qa : fixed style and a bug reported by flake8 lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306 Flake8 found errors.	2016-06-11 12:57:46 +02:00
alalazo	eb9b00b210	versions : added unit tests for the new properties	2016-06-11 12:44:21 +02:00
Gregory Becker	0fea167f97	I made a hash of that minor merge Merge commit '4eeb' into features/newarch	2016-06-10 16:28:09 -07:00
Gregory Becker	992bcac794	changed compiler yaml format	2016-06-10 16:26:02 -07:00
Erik Schnetter	2a4d440003	Add quotes around file name $input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.	2016-06-08 19:14:01 -04:00
Orion Poplawski	7ce08c4216	Remove last two remaining from external imports	2016-06-08 13:51:31 -06:00
Peter Scheibel	3b71d78f3c	rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors)	2016-06-08 09:57:56 -07:00
alalazo	564483936f	qa : fixed flake8 issues	2016-06-08 16:33:49 +02:00
alalazo	f4a39457de	lmod : updated package and dependencies	2016-06-08 15:35:15 +02:00
Peter Scheibel	a2754894ea	(1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit)	2016-06-07 16:26:54 -07:00
Mario Melara	5715799d4e	Added to_dict back into operating system	2016-06-07 14:15:28 -07:00
Mario Melara	4925be0bc4	Load external modules	2016-06-07 13:22:47 -07:00
Peter Scheibel	de1ec4be8b	change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version.	2016-06-06 12:26:13 -07:00
Mario Melara	196737c217	Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters	2016-06-06 10:29:19 -07:00
Mario Melara	835982faed	Changed OS name to CNL10 so that we properly find the compilers for the test platform	2016-06-06 09:08:59 -07:00
Mario Melara	864191b6ed	Got rid of unnecessary global keyword	2016-06-06 09:06:58 -07:00
Mario Melara	5b023bb0a1	Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system	2016-06-06 09:05:14 -07:00
Mario Melara	c7b48f6fef	Passing full arch for proper compiler spec so that we can use the platform to get the operating system	2016-06-06 09:04:24 -07:00
Mario Melara	f751d68177	Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding.	2016-06-06 09:03:32 -07:00
Tom Scogland	30e8e77fb6	Merge pull request #869 from brettviren/feature/views Feature/views	2016-06-05 11:31:48 -07:00
alalazo	bdd874eb7f	autopep8	2016-06-04 18:09:28 +02:00
alalazo	02cadb882b	unit test : suffixes	2016-06-04 18:09:06 +02:00
alalazo	669caefccb	unit test : wrong naming scheme in conflict	2016-06-04 18:00:18 +02:00
alalazo	d43cfefa43	autopep8	2016-06-04 17:24:52 +02:00
alalazo	2d6db06fca	unit test : prerequisites	2016-06-04 17:24:27 +02:00
alalazo	ffa6fed3a3	unit test : custom module file load	2016-06-04 17:20:06 +02:00
alalazo	422d3d4db6	unit test : write a whitelisted module	2016-06-04 16:46:15 +02:00
alalazo	09b1daa7b9	unit test : write a blacklisted module	2016-06-04 16:23:41 +02:00
alalazo	408aa10210	unit test : whitelist	2016-06-04 16:18:15 +02:00
alalazo	a3f39c2315	autopep8 : fixed style issues	2016-06-04 11:23:23 +02:00
alalazo	97e2834816	unit test : wrong tag for dependencies	2016-06-04 11:20:35 +02:00
alalazo	2207ab8f23	unit test : inspect_path	2016-06-04 10:44:37 +02:00
alalazo	0e71b5dde8	unit test : update dictionary extending lists	2016-06-04 10:07:13 +02:00
Mario Melara	30c204a0a5	Made a merge commit earlier with Todd fixing all_platforms, but changed how architecture looks in spec.yaml. Just three strings. Also made some flake8 formatting changes	2016-06-03 16:16:59 -07:00
Mario Melara	bc557cc765	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-06-03 15:59:00 -07:00
Mario Melara	24d160e93e	Changed how architecture looks like in spec.yaml. Now it's only three strings, platform, os, target in spec.yaml. Also did some flake8 formatting changes	2016-06-03 15:57:54 -07:00
Todd Gamblin	9d04dccb79	Update version to correspond to master.	2016-06-02 01:20:40 -07:00
Gregory Becker	817f43f927	Fixed config format to allow default compiler flags	2016-05-31 13:39:25 -07:00
Todd Gamblin	7bdf63a0fa	Fix some bugs in architecture.	2016-05-31 03:01:05 -07:00
Todd Gamblin	24ee32d7b0	More flexible reading of specs from DB, formatting.	2016-05-30 22:02:22 -07:00
Todd Gamblin	f3f0122f11	Merge branch 'develop' into features/newarch	2016-05-30 13:54:53 -07:00
Mario Melara	b14ba31250	Quick fix for mock compilers.yaml to work on linux machines.	2016-05-30 13:22:08 -07:00
Mario Melara	716991775d	Added extra check on linux machines, since most linux machines don't have module system	2016-05-30 13:09:41 -07:00
Mario Melara	08a9d80ebc	Changed platform to py_platform to avoid name collisions. The naming collisions resulted in an error on linux machines	2016-05-30 13:07:20 -07:00
Mario Melara	f96c979024	Added a conditional to check if package is external	2016-05-30 13:05:49 -07:00
Todd Gamblin	e8b4d5fb6f	Performance boost: reduce instantiations of re.Scanner - Lexer is the same for every Spec parser in spack, so don't build it every time. - This improves time to import package.py files a lot, as a Lexer doesn't have to be constructed for every spc in the packages. - To concretize dealii: - Before: ~20 sec - After: ~6 sec	2016-05-28 23:05:23 -07:00
Mario Melara	22ca72e7b9	Added conditional skipIf to test_external_modules, darwin machines don't have tcl modules so skip this test and let user know why	2016-05-28 12:40:29 -07:00
Mario Melara	69585cb6e3	Added elcap compilers	2016-05-28 12:39:43 -07:00
Mario Melara	f0a9c45207	Adding external to mock config	2016-05-28 10:13:57 -07:00
Mario Melara	98a4a9f2cc	Adding test for external modules	2016-05-28 10:13:22 -07:00
Mario Melara	becec8ac7e	Added external module check in normalize to avoid infinite loop	2016-05-28 10:12:53 -07:00
Gregory Becker	9dad7c2ace	re-merged mainline develop	2016-05-27 13:13:19 -07:00
Gregory Becker	f49644cdea	Fixed typo in linux platform	2016-05-27 12:37:58 -07:00
Gregory Becker	023504ed64	Fixed the external modules bug	2016-05-27 12:26:59 -07:00
Todd Gamblin	285646bbfa	Merge pull request #981 from epfl-scitas/tests/unit_test_for_968 find : add unit tests	2016-05-27 11:00:45 -05:00
Todd Gamblin	2f18a34458	Merge pull request #989 from LLNL/features/cflags-documentation updated documentation for cflags PR	2016-05-27 10:59:40 -05:00
Gregory Becker	a2f90453f4	Fixed backwards compatibility for compilers.yaml config file	2016-05-26 20:30:05 -07:00
Mario Melara	9c1da4fa4c	Corrected parantheses wrapping	2016-05-26 13:58:17 -07:00
Gregory Becker	189e8b3f34	fixed compiler config init logic	2016-05-26 13:17:01 -07:00
Gregory Becker	88bec814eb	Allow 'arch=' syntax for specs to allow copying from output	2016-05-26 12:10:41 -07:00
Gregory Becker	c0661744cc	fixed compatibility work	2016-05-26 11:38:40 -07:00
Gregory Becker	b968603a57	made yaml format backwards compatible	2016-05-26 11:14:05 -07:00
Mario Melara	3b675d8b70	Changed comparison operator so that we don't get caught in an infinite loop	2016-05-26 11:09:14 -07:00
Gregory Becker	c30fe932d9	fixed mock config to use truncated versions of linux distro versions	2016-05-25 16:34:45 -07:00
Gregory Becker	8f99334f11	Fixed test config to work on yosemite	2016-05-25 16:06:14 -07:00
Todd Gamblin	76d42b5200	Merge pull request #982 from trws/rust Rust	2016-05-25 15:15:51 -05:00
Gregory Becker	0f40174723	added test platform	2016-05-25 12:28:59 -07:00
Gregory Becker	3a68dd2011	(hopefully) final fixes of the merge	2016-05-25 12:22:16 -07:00
Gregory Becker	74dc7ffe4d	updated documentation for cflags PR	2016-05-25 10:56:12 -07:00
Peter Scheibel	dd26c0bbcc	merge from develop	2016-05-24 18:56:44 -07:00
alalazo	84707ed926	modules : it's possible to add suffixes to module files based on constraint	2016-05-24 15:23:52 +02:00
Gregory Becker	513aae5ef8	fixed bug where earlier test was blowing away environment, causing an error on which('modulecmd')	2016-05-23 17:39:06 -07:00
Gregory Becker	1da6bbd146	Fixed a couple more bugs	2016-05-23 17:25:54 -07:00
Gregory Becker	d438ea0880	'Ugly merge because I mishandled git Merge branch 'save' into features/newarch	2016-05-23 16:57:54 -07:00
Gregory Becker	d7612e7aaa	Fixed errors caught by spec and concretize tests	2016-05-23 16:54:41 -07:00
Mario Melara	6c352132d0	Started writing documentation for architecture. Might need a couple more drafts	2016-05-23 14:28:00 -07:00
alalazo	0890ac4507	modules : explicit module file load from configuration files	2016-05-23 10:54:48 +02:00
Todd Gamblin	3ab56a188e	Fixes #980 : really slow spack spec performance - `spack spec dealii` now takse seconds rather than 18 minutes. - Slow hash (`dag_hash`) was accidentally inserted into the fast hash (`__hash__`). - Do not put the slow hash in the fast hash.	2016-05-22 18:33:13 -07:00
Tom Scogland	9bd4bc02d6	fixing warning for package fetch	2016-05-22 11:16:00 -07:00
Todd Gamblin	d087086581	update documentation.	2016-05-21 14:33:05 -07:00
Mario Melara	c3767d593d	compiler list is sorted in descending order, in order to get most up to date version we check from the beginning of the list	2016-05-20 15:48:13 -07:00
alalazo	7303c387e8	autopep8 : fixed style	2016-05-20 10:34:11 +02:00
alalazo	b485ca8198	find : added unit tests, exits with 1 if -E and -e are given	2016-05-20 10:32:46 +02:00
Mario Melara	175a042fd3	Changed rpaths method so that it only grabs rpaths using the compiler module name instead of PrgEnv-x module name	2016-05-19 16:42:13 -07:00
Mario Melara	36450b9bc9	Adding link_paths to craype compilers	2016-05-19 14:25:50 -07:00
Gregory Becker	19c8a52fe1	fixed spec syntax test	2016-05-19 09:53:49 -07:00
Brett Viren	126fc10b9d	Remove `view print` for now.	2016-05-19 08:36:18 -06:00
Gregory Becker	63459ab0c7	Fixed some of the bugs	2016-05-18 18:21:52 -07:00
Gregory Becker	01d5ffcd87	Fixed the first set of merge bugs	2016-05-18 17:42:11 -07:00
Mario Melara	16431f7a4c	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-05-18 17:26:30 -07:00
Mario Melara	b25da51638	Changed unsatisfiable architecture test	2016-05-18 17:26:06 -07:00
Mario Melara	6926f4d0da	Changed arch tests to new spec target= os=	2016-05-18 17:23:10 -07:00
Gregory Becker	5417f1cdc6	more merge work	2016-05-18 17:21:03 -07:00
Gregory Becker	b1e5eafb80	more merge work	2016-05-18 17:18:26 -07:00
Gregory Becker	deb5011d08	more merge work	2016-05-18 17:14:16 -07:00
Mario Melara	b4b7942230	Moved searching of flags into get compilers in compilers_for_spec	2016-05-18 17:07:23 -07:00
Mario Melara	9f8ff32bcc	Got rid of ifdefs, changed parameters for Compiler: added kwargs	2016-05-18 17:05:11 -07:00
Mario Melara	faa0f2a13c	got rid of ifdef	2016-05-18 17:01:59 -07:00
Gregory Becker	80310a3b7c	Finished merge on these files	2016-05-18 16:50:50 -07:00
Gregory Becker	9f59c128be	Partial merge of mainline develop	2016-05-18 15:13:40 -07:00
Tom Scogland	a1f8cc2817	peren-nesting fix in spec	2016-05-18 14:24:16 -07:00
Tom Scogland	29635b7bbd	initial docs for find and flake8 cleanup	2016-05-18 14:04:39 -07:00
alalazo	23c7089789	fixes #967 , flake8 approved	2016-05-18 11:52:27 +02:00
alalazo	fcc30cbf30	fixes #967	2016-05-18 11:48:03 +02:00
Todd Gamblin	502420ceff	Merge branch 'features/cflags' into develop Conflicts: lib/spack/spack/cmd/find.py var/spack/repos/builtin/packages/ghostscript/package.py	2016-05-17 16:44:54 -07:00
Todd Gamblin	9d584d0c47	Tag Spack version 0.9 - Tagging a version to include all that's happened since 0.8.17 - This is in anticipation of merging `features/cflags` and `features/newarch`, which will break the spec format. - 1.0 will likely come after those.	2016-05-17 16:06:43 -07:00
Todd Gamblin	15e9d5f96e	Merge pull request #868 from trws/explicitly-installed track whether a package was installed "explicitly"	2016-05-17 14:28:17 -07:00
Todd Gamblin	138307dd0c	Merge pull request #955 from trws/lua-rework complete lua rework	2016-05-17 13:21:51 -07:00
Erik Schnetter	fcc4c1b2f2	Remove duplicate providers that can concretize to the same result Patch generously provided by @becker33. Closes #928.	2016-05-17 15:13:28 -04:00
Gregory Becker	0fd9cdb861	Fixed config tests for new compiler config format	2016-05-16 09:56:07 -07:00
Gregory Becker	7705603f73	Added more compilers to mock packages tests	2016-05-16 09:43:46 -07:00
Tom Scogland	8859a09cd2	handle explicit when requesting to install already installed packages	2016-05-16 08:08:40 -07:00
Tom Scogland	4acdfeae61	track whether a package was installed "explicitly" Adds a new attribute in the database to track whether a package was installed explicitly or not, where explicitly is the user running `spack install <package>` and implicitly is it being installed as a dependency. It also adds arguments to `spack find` to find these packages such that it should be possible to query the packages that were installed implicitly and are not currently depended upon any longer.	2016-05-16 08:08:40 -07:00
Brett Viren	1bbe6409e1	Merge remote-tracking branch 'upstream/develop' into view-fix-merge	2016-05-16 10:09:31 -04:00
Brett Viren	77a34ebdf9	flake8-clean.	2016-05-16 10:08:59 -04:00
Tom Scogland	dacedfcc0e	formatting to appease flake8	2016-05-16 05:12:30 -07:00
Tom Scogland	c6524d0311	environment: fixed comment and default separator	2016-05-15 09:50:21 -07:00
Tom Scogland	577657b3f7	go rework This commit includes: * a new go package that uses gccgo to bootstrap the go toolchain * env support added to Executable * a new Go fetch strategy that uses `go get` to fetch a package and all of its deps * A platinum searcher package that leverages the new go package and fetch strategy	2016-05-14 22:35:55 -07:00
Tom Scogland	a2197f3a41	yet more sacrifices to the god of short-lines	2016-05-14 17:51:58 -07:00
Tom Scogland	df30182a10	appeasing flake8 in environment	2016-05-14 17:39:59 -07:00
Tom Scogland	12e36ee0e7	fix merge error	2016-05-14 16:20:45 -07:00
Tom Scogland	b5979b13e3	complete lua rework, also module path fix This is a complete rework of the lua package, it also allows the environment modification classes to handle paths that are not separated by colons, and uses the support for same in TCL modules as well. The biggest difference is the handling for lua extension packages, which now have their paths set correctly by the lua parent package, and have access to both lua and luarocks as installation tools. See the luaposix package for what should be required for most lua packages after this.	2016-05-14 16:18:26 -07:00
Elizabeth Fischer	efa506b235	Preparing spack setup command for merge. Try this out for a while...	2016-05-14 17:09:11 -04:00
Brett Viren	b3ede099e2	Document command.	2016-05-14 13:15:25 -04:00
Brett Viren	c98afe2205	Pick a better name for the 'spec' parameters.	2016-05-14 13:14:51 -04:00
Brett Viren	8ddc1f8977	Move from str.format() to string.Template.	2016-05-14 09:11:04 -04:00
Gregory L. Lee	e9b71872a8	addressed PR#946 comments from @adamjstewart	2016-05-13 15:16:07 -07:00
Mario Melara	fce6ecb05c	Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers	2016-05-13 15:04:06 -07:00
Gregory Becker	f43cab0951	fixed pkgconfig issue	2016-05-13 14:39:20 -07:00
Gregory L. Lee	b8a91db089	Intel software packages and license enhancements	2016-05-12 20:04:45 -07:00
Gregory Becker	4c9dd028d2	Fixed error causing hang in env/cc	2016-05-12 17:20:48 -07:00
Todd Gamblin	5e13bba068	Fix #941 : add copyright to new package files. - also reworded the boilerplate a bit.	2016-05-12 10:30:13 -07:00
Denis Davydov	68c681bb78	document blas and lapack usage in packages	2016-05-12 08:59:17 +02:00
Todd Gamblin	e7ced54369	Correct LLNL LGPL license template for clarity.	2016-05-11 21:22:25 -07:00
Todd Gamblin	14fe0b8ad2	Merge pull request #558 from adamjstewart/features/pgi Add Licensed Software Support	2016-05-11 17:17:47 -07:00
Gregory Becker	45bf93405a	Changed spec syntax for new parts from modules feature	2016-05-11 16:23:13 -07:00
Gregory Becker	2e1810e3a7	re-merging develop	2016-05-11 15:26:09 -07:00
Gregory Becker	566fec4015	Fixed variants in new format and removed print statements from debugging	2016-05-11 14:56:41 -07:00
Gregory Becker	0b5836cfce	Fixed flipped conditional in satisfies	2016-05-11 10:51:52 -07:00
Adam J. Stewart	c043275f1b	Final flake8 changes	2016-05-11 11:46:41 -05:00
Todd Gamblin	9cf5404bb7	Merge pull request #937 from davydden/features/unit_tests Features/package_test	2016-05-11 09:42:00 -07:00
Adam J. Stewart	5879f8207f	Flake8 formatting changes	2016-05-11 11:32:08 -05:00
Adam J. Stewart	ee7ec4fa66	Move all licensing support to pre/post_install hooks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	19f4b27fd2	Add documentation for packaging of licensed software	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8bcb812529	Allow multiple license symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	2a11cb8b76	Use global licenses with local symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	6906911e85	Allow license files to use different symbols for comments	2016-05-11 11:32:08 -05:00
Adam J. Stewart	b63d11d5b0	Formatting consistency	2016-05-11 11:32:07 -05:00
Adam J. Stewart	5cb45c253e	Bug fix	2016-05-11 11:32:07 -05:00
Adam J. Stewart	1b997f10a8	Add set_up_license function	2016-05-11 11:32:07 -05:00
Adam J. Stewart	8cba8d6d1d	Add default global variables for licensing information	2016-05-11 11:29:30 -05:00
Todd Gamblin	fd5d89b61c	Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config	2016-05-11 08:59:23 -07:00
alalazo	bb4b6c8ee2	flake 8 : fixed checks	2016-05-11 17:02:36 +02:00
Denis Davydov	eba264fcd0	fix formatting	2016-05-11 16:11:34 +02:00
alalazo	78ae5d7723	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config Conflicts: lib/spack/spack/config.py	2016-05-11 16:11:19 +02:00
alalazo	22bb0562fe	Revert "flake8 : fixed all issues?" This reverts commit `71e49e289a`.	2016-05-11 16:09:47 +02:00
alalazo	b215b19cae	modules : added docs	2016-05-11 15:42:48 +02:00
Denis Davydov	809ded74c9	add functions for simple unit tests; refactor openblas to use them	2016-05-11 15:10:13 +02:00
Benedikt Hegner	0b7b25487f	improve error message for wrong config section names	2016-05-11 13:29:27 +02:00
Todd Gamblin	6d6eb0f2d1	Remove config.py from flake checking for now.	2016-05-11 02:32:13 -07:00
Todd Gamblin	fc8d18ebdc	Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config	2016-05-11 02:31:20 -07:00
Todd Gamblin	9030541e4b	Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages QA : make qa checking less painful	2016-05-11 02:26:07 -07:00
Benedikt Hegner	c1e6b52184	first round of coding rules	2016-05-11 00:28:12 +02:00
Benedikt Hegner	05b6c3f8cf	add test for list parameters	2016-05-11 00:14:24 +02:00
Benedikt Hegner	6e462abb4d	hmm... test before commit	2016-05-10 23:31:29 +02:00
Benedikt Hegner	5d477bc956	fix setting config for list parameters	2016-05-10 23:19:30 +02:00
Todd Gamblin	98faee1d5c	Minor tweaks to `flock` docs.	2016-05-10 11:19:17 -07:00
Todd Gamblin	a49662276d	Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock	2016-05-10 11:10:07 -07:00
Luca Heltai	4cb91d6f7b	Added documentation on lockf/flock.	2016-05-10 19:46:24 +02:00
alalazo	7d74e209f3	qa : this should still fail due to F821	2016-05-10 19:20:26 +02:00
alalazo	979b53cab6	qa : modifying 2 packages and a framework file just for the sake of it	2016-05-10 18:33:07 +02:00
alalazo	71e49e289a	flake8 : fixed all issues?	2016-05-10 17:19:22 +02:00
alalazo	c3f3f26632	modules : added warning if a user tries to add prerequisite with dotkit	2016-05-10 16:16:50 +02:00
alalazo	0b7c673205	modules : changed syntax for environment modifications	2016-05-10 15:48:37 +02:00
alalazo	f8f71b1c2c	modules : prefix_inspections moved to modules.yaml	2016-05-10 13:37:03 +02:00
alalazo	9eee71edf7	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-05-10 11:13:19 +02:00
Todd Gamblin	42edb6840e	Merge pull request #905 from adamjstewart/features/rpath_flag Allow compilers to specify their own rpath linking flags	2016-05-10 01:56:49 -07:00
Todd Gamblin	a2528a86b4	Merge pull request #692 from mathstuf/quoted-command-lines executable: quote arguments	2016-05-10 01:42:26 -07:00
Todd Gamblin	8ce45d2161	Merge pull request #775 from epfl-scitas/fixes/config_update fix: proper update of config file	2016-05-10 01:35:56 -07:00
Todd Gamblin	57e495943f	Merge pull request #757 from glennpj/extend_r Make R extendable	2016-05-10 01:30:13 -07:00
Todd Gamblin	69f6baf28e	Merge pull request #842 from hegner/compiler_lookup_order Bugfix - preserve lookup order in PATH when invoking 'spack compiler add'	2016-05-10 01:11:18 -07:00
Todd Gamblin	cbfba84aa2	Merge pull request #849 from brettviren/bugfix/share-pkgconfig Add to sub dirs checked for pkg-config files.	2016-05-10 00:59:01 -07:00
Gregory Becker	c6ac709d70	WIP fixing all the things that broke when I changed the anonymous spec names	2016-05-09 17:06:21 -07:00
Gregory Becker	a7026da45c	cleanup	2016-05-09 16:24:26 -07:00
Gregory Becker	222c84d9be	Changed anonymous specs to have name=None instead of empty string	2016-05-09 16:22:17 -07:00
Adam J. Stewart	6665a996e6	Add documentation for rpath_flag handling	2016-05-09 17:04:14 -05:00
Adam J. Stewart	58733eb26a	Comment change	2016-05-09 16:59:39 -05:00
Adam J. Stewart	b211829fb1	Testing typo	2016-05-09 16:59:39 -05:00
Adam J. Stewart	4473311bdb	Allow compilers to specify their own rpath linking flags	2016-05-09 16:59:39 -05:00
Denis Davydov	7a2d65967c	wrap tty.die to 80 chars	2016-05-09 22:04:34 +02:00
Todd Gamblin	73107d6b0f	cleanup	2016-05-09 03:40:34 -07:00
Todd Gamblin	0c853ac3ea	Make _hash private to discourage access; fix dag_hash length handling.	2016-05-09 03:39:08 -07:00
Todd Gamblin	7151fd8836	Restore `cc` from mainline; clean up some cflags stuff.	2016-05-09 03:37:27 -07:00
Brett Viren	f1900f6a7b	Add a 'print' view allowing genreation of arbitrary strings based on format using package/spec parameters.	2016-05-08 10:25:21 -04:00
Brett Viren	2d1430da13	Address all coments in @trws's latest comment in PR #869 . I addressed them by factoring the code better to follow the visitor pattern. This will allow actions to be easily added in the future. These may not even be file sytsem views. One could add actions to generate shell init scripts, JSON DAG-dumpers, GraphViz DOT file generators, etc (yes, some of these are alread in there - just to give the idea). Also added is a top-level test $ source share/spack/setup-env.sh $ ./share/spack/examples/test_view.sh Read the top of that script first.	2016-05-07 18:24:24 -04:00
Gregory Becker	d392056457	Cleaning up print statements for debugging	2016-05-06 18:05:30 -07:00
Gregory Becker	1523ebe9f7	Working properly to display but not reuse old specs from yaml	2016-05-06 18:03:43 -07:00
Gregory Becker	06b9433351	Fixed previous commit	2016-05-06 12:35:43 -07:00
Gregory Becker	bc087cfefb	Fixed database to account for hashes when reading install records	2016-05-06 12:28:46 -07:00
Gregory Becker	9f37e4c907	Made spec hashes immutable once concrete -- improved	2016-05-06 12:05:51 -07:00
Gregory Becker	addcde4f35	Made spec hashes immutable once concrete	2016-05-06 12:05:27 -07:00
Gregory Becker	2f821b9e9b	temp	2016-05-05 18:13:56 -07:00
Gregory Becker	9a39ccea8f	Every old spec has empty compiler flags	2016-05-05 17:49:30 -07:00
Gregory Becker	1bb7bfaf7f	Versioning the database -- automatic reindex	2016-05-05 17:38:51 -07:00
Gregory Becker	3fc1344865	temp	2016-05-05 17:11:09 -07:00
Gregory Becker	11b62114bb	versioning the database	2016-05-05 16:58:00 -07:00
Elizabeth Fischer	6a48385111	Keep users environment in the spack setup script (spconfig.py). This is important to avoid breaking things that require module loads to work; for example, non-activate Python packages.	2016-05-05 17:48:24 -04:00
Todd Gamblin	9fb1a9537d	Merge branch 'develop' into features/cflags	2016-05-05 10:49:15 -07:00
Denis Davydov	c37ea9aff5	document usage of compiler flags properties	2016-05-05 11:56:58 +02:00
Denis Davydov	f84f04591b	substitute cxx14_flag by a property with the same name to be overridden in derived classes	2016-05-05 10:48:31 +02:00
Denis Davydov	c6fb6bde40	remove cxx11_flag from Compiler as it is now substituted by a property with the same name	2016-05-05 10:47:02 +02:00
Denis Davydov	ddcb97f953	add a temporary Nag.cxx11_flag property	2016-05-05 10:44:41 +02:00
Denis Davydov	473a5542be	compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class	2016-05-05 10:44:41 +02:00
Denis Davydov	30b65d3114	fix comment in Compiler class	2016-05-05 10:44:41 +02:00
Denis Davydov	e28ca3922f	compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag	2016-05-05 10:44:41 +02:00
Denis Davydov	d5a760776a	compiler: add default implementation of openmp_flag() and css11_flag()	2016-05-05 10:44:41 +02:00
Denis Davydov	6a418cfb8d	compiler: simplify Clang.is_apple	2016-05-05 10:44:41 +02:00
Denis Davydov	f2f1c49c90	compilers: one more missing import statement	2016-05-05 10:44:41 +02:00
Denis Davydov	07fd0ccc9a	compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version	2016-05-05 10:44:41 +02:00
Denis Davydov	592045cd54	compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version	2016-05-05 10:44:41 +02:00
Denis Davydov	3cd3052c56	compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag()	2016-05-05 10:44:41 +02:00
Denis Davydov	c078deaab1	compilers: add missing import statements	2016-05-05 10:44:41 +02:00
Denis Davydov	9776dc0433	compilers: add openmp_flag() method	2016-05-05 10:44:41 +02:00
Denis Davydov	2cdfe14e5a	compilers: make sure cxx11_flag() is defined for all compilers	2016-05-05 10:44:41 +02:00
Todd Gamblin	13e52962ee	Merge pull request #802 from gartung/std-cpp14 Handle c++11 and c++14 correctly	2016-05-05 01:41:55 -07:00
Gregory Becker	90b7b7ba5c	Reworked compiler finding/storing/format to allow for multiple compilers with the same spec for different operating systems. TODO: fix config tests. All others up to date	2016-05-04 21:42:59 -07:00
Elizabeth F	2243de9e2f	Make quiet mode default for spack spconfig	2016-05-04 23:39:27 -04:00
Denis Davydov	c3317819cb	mpi: add self.spec.[mpicc\|mpicxx\|mpifc\|mpif77] to avoid hardcoding MPI wrappers names	2016-05-04 10:37:52 +02:00
Brett Viren	346f102234	Bug fixes, tty tweaks.	2016-05-01 17:13:44 -04:00
Brett Viren	8c140f4725	Change the action from parameter to subcommand to fit Spack convention.	2016-05-01 17:13:43 -04:00
Brett Viren	a2b9a000dc	Add add removal and status actions in addition to link and add various ways to filter what is done.	2016-04-29 15:12:09 -04:00
Gregory Becker	4ba73dac34	Unit tests for cflags PR	2016-04-28 14:01:38 -07:00
Todd Gamblin	8cd13d4b35	Make arch command print out the platform.	2016-04-28 12:49:21 -07:00
Brett Viren	49956faab9	First try to make file system views of specs.	2016-04-28 14:54:14 -04:00
Gregory Becker	3b84345b77	Changed yaml format for node_dicts to mitigate future incompatibilities	2016-04-28 11:05:59 -07:00
Todd Gamblin	c35994d5bf	Merge pull request #850 from mathstuf/partial-downloads fetch_strategy: download to temporary files	2016-04-28 10:22:43 -07:00
Gregory Becker	ae5198e5e7	Merged in current develop to cflags 042716	2016-04-27 19:38:51 -07:00
Elizabeth F	4d466fe879	spack setup: Fix broken module convenience settings.	2016-04-27 20:57:04 -04:00
Todd Gamblin	8773a0b747	Merge pull request #847 from epfl-scitas/features/test_install_with_time test-install command : added elapsed time + xml is prettyprinted	2016-04-27 17:32:21 -07:00
Ben Boeckel	e53571d2f0	fetch_strategy: download to temporary files This supports graceful recovery if spack is killed via a signal (e.g., SIGINT) while downloading a file. Fixes #287.	2016-04-27 14:49:27 -04:00
Brett Viren	b5ebd12fe2	Add to sub dirs checked for pkg-config files. This lets me build against the pure-include package Eigen.	2016-04-27 13:45:05 -04:00
Massimiliano Culpo	b1ba869b37	test-install : fixed error in logic exposed by tests	2016-04-27 19:28:13 +02:00
Massimiliano Culpo	4846ab70d8	test-install : python 2.6 compatibility	2016-04-27 18:21:36 +02:00
Massimiliano Culpo	ec5bb88820	test-install : unit tests (hopefully) fixed for real	2016-04-27 18:06:41 +02:00
alalazo	42fab1591d	test-install : fixed unit tests	2016-04-27 17:19:03 +02:00
alalazo	12dbd65f4c	test-install : first draft that works	2016-04-27 13:56:32 +02:00
Benedikt Hegner	b7c064142e	preserve lookup order in PATH when invoking 'spack compiler add'	2016-04-27 01:23:53 +02:00
Ben Boeckel	603467785b	Compiler find docs (#831 ) * docs: mention `spack compiler find` * docs: fix some weird wording.	2016-04-26 10:00:54 -07:00
alalazo	99b52e6e71	test-install : wip to add other information	2016-04-26 16:41:33 +02:00
Ben Boeckel	ff9145f8a5	executable: quote arguments This allows command line arguments with spaces to be shown. The quoting madness is because a single quote cannot appear within a single quoted argument on the command line. To do so, you have to stop the single quote argument, double quote the single quote, then open the single quote again: $ echo 'before'"'"'after' before'after Fixes #174	2016-04-25 09:44:17 -04:00
Ben Boeckel	ed16bd133a	compiler: add "find" subcommand (#818 ) And make "add" an alias to it. Fixes #713.	2016-04-23 13:34:51 -07:00
alalazo	67a01ef2ee	tcl : extended conflict to be an array of strings	2016-04-22 10:50:24 +02:00
Todd Gamblin	fa02f94ca4	Regression test for not adding RPATHs with `ld -r` (#809 , #821 ) - ld -r is only broken with rpaths on OSX; this tests that specific case. - test should still work cross-platform.	2016-04-21 23:12:33 -07:00
Denis Davydov	a0989ad672	minor cleanup of environment-modules documentation (#814 ) * minor cleanup of environment-modules documentation * environment modules: update usage instructions	2016-04-21 19:26:19 -07:00
Patrick Gartung	d5d1e89cbd	remove use of unknown environment variable in lib/spack/env/cc (#821 )	2016-04-21 19:15:54 -07:00
Adam Lyon	e92da6a6ba	Handle c++11 and c++14 correctly	2016-04-19 16:52:08 -05:00
alalazo	5deaaa278c	modules : added a few unit tests	2016-04-19 14:25:12 +02:00
alalazo	bce276d573	fix : missing autoload, failing validation	2016-04-18 17:51:53 +02:00
alalazo	50b148ca22	modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498	2016-04-18 13:22:50 +02:00
alalazo	18a241fe21	modules : added hook for module specific extensions	2016-04-18 13:22:31 +02:00
alalazo	c69acfa5c8	naming work correctly	2016-04-18 13:22:04 +02:00
alalazo	00f44d558a	modules : started working on naming schemes and conflict	2016-04-18 13:21:41 +02:00
alalazo	1b4c4be151	modules : category is a single word (as I am not sure how dotkit will react to spaces)	2016-04-13 12:44:51 +02:00
alalazo	c422ce7c1d	modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules	2016-04-13 11:26:22 +02:00
alalazo	fcd58a95dd	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-04-13 10:49:00 +02:00
alalazo	27280ea8be	fix : added regression tests	2016-04-12 17:28:23 +02:00
alalazo	80678b2188	fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774	2016-04-12 16:54:51 +02:00
alalazo	41f365112c	modules : added provenance comment in tcl header	2016-04-12 09:13:50 +02:00
alalazo	3959ca6270	modules : added possibility to blacklist or whitelist module files	2016-04-11 18:10:06 +02:00
alalazo	0e2b1359e3	modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies	2016-04-11 11:01:47 +02:00
Massimiliano Culpo	a5a5dbc408	tcl module file : added new-lines in autoload (per @glennpj bug report)	2016-04-10 13:21:41 +02:00
Mario Melara	3a281b2399	Commented out the add_x_from_string methods since we don't need to worry about it. Also, changed the way architecture is set. Todd wanted to have users be able to input just frontend and/or backend in the architecture spec. This will be able to parse those inputs.	2016-04-08 12:46:44 -07:00
Mario Melara	01a36ab333	Changed the logic of concretize. We don't have to worry about whether the part of the spec is a string since any string parsed is made into an object via the Arch constructor. Any dependencies will take the root arch spec as well	2016-04-08 12:44:27 -07:00
Mario Melara	5bcd1e7ccd	If we already have the name and the platform, then we should probably go ahead and concretize it in the constructor. Else leave it as None and concretize it later.	2016-04-08 12:43:08 -07:00
Mario Melara	618b3f5f2d	Changed default to default_target so the tests can pass	2016-04-08 11:18:30 -07:00
Mario Melara	277efc1dfb	Added test that works on every type of combination the user could possibly enter for arch spec	2016-04-08 11:17:56 -07:00
Matthew LeGendre	1af88be371	Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list.	2016-04-08 11:06:14 -07:00
Mario Melara	0d1a1b7526	Changed _set_architecture so if user inputs only the target, then os is None. This prevents the os being referenced before assignment error	2016-04-08 10:29:37 -07:00
Mario Melara	6ff6c805af	Assigned self.front_os, and back_os to self.default. Helps with testing. If we're on a darwin or linux machine, chances are there is no back end or front end operating system, but rather than have those as None, I just assign them the default which is detected via python platform.	2016-04-08 10:28:30 -07:00
Mario Melara	7b777568ed	Added new concretization of architecture tests, test each combination of user input to make sure the correct os and target are chosen	2016-04-07 14:38:43 -07:00
Mario Melara	0ad317213c	Changed architecture parser so that if user just enters in frontend or backend, then both the os and target will take those names. In the concretize method the frontend target/os and backend target/os will be picked to match each other	2016-04-07 14:38:04 -07:00
Mario Melara	07df403203	Cleaned up the concretize_architecture method by removing commented out code	2016-04-07 14:37:00 -07:00
Mario Melara	143a4d7f76	Changed default to default_target, also added frontend and backend to operating system	2016-04-07 14:36:26 -07:00
alalazo	1714f410f0	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-04-07 10:48:16 +02:00
alalazo	7dc1524c08	modules : added stub for dotkit (to be verified)	2016-04-07 10:48:05 +02:00
Glenn Johnson	b19d6ab9c5	Check for non-numeric bits in the stem.	2016-04-06 19:08:01 -05:00
Glenn Johnson	fbabfc593d	Make R extensable and add a couple of packages for verification. Added R as a build system so that the create template will have the correct configure line. Added a regex for version parsing as the R URLs are a little odd.	2016-04-06 16:44:22 -05:00
Mario Melara	99117cbc90	pulled from current repo the build_environment.py. Added module loading methods from our cray port	2016-04-06 14:07:22 -07:00
Mario Melara	918ad28a93	Changed all target values to architecture. Also added a sort_key method so that older architecture specs can be sorted with the newer ones	2016-04-06 13:58:29 -07:00
Massimiliano Culpo	4001663982	leftover from cherry-pick	2016-04-06 22:19:07 +02:00
alalazo	73b6214a13	module files : proper cleanup on uninstall fixes #216 Conflicts: lib/spack/spack/test/database.py	2016-04-06 22:10:04 +02:00
Mario Melara	749508af01	Found loops calling all_compilers that were always reading in the config file which lead to a slowdown, the fix is to cache the config file so we don't waste time re-reading the config file in again.	2016-04-06 12:05:29 -07:00
Mario Melara	3bf75fab3f	Cleaned up architecture. Changed operating_system from dictionary method	2016-04-06 12:03:26 -07:00
alalazo	21b7734d92	modules : removed debug leftover	2016-04-06 17:08:31 +02:00
alalazo	7904f75782	modules : all the other strings are lower case	2016-04-06 17:05:47 +02:00
alalazo	e4cfe74887	modules : customization based on specs	2016-04-06 16:42:56 +02:00
alalazo	e993c17f89	modules : added environment modifications from configuration file	2016-04-06 14:02:27 +02:00
alalazo	d636b4fdde	modules : more sensible name to blacklist environment variables modules : added skeleton to permit modifications based on specs	2016-04-06 13:42:47 +02:00
Todd Gamblin	e104592e1f	Merge pull request #738 from eschnett/eschnett/cleanup-cc Clean up cc script	2016-04-05 10:50:45 -07:00
alalazo	670cb423f9	modules : iterating on all the dependencies doesn't reuire try/except KeyError	2016-04-05 18:44:40 +02:00
alalazo	5da37c573f	modules : don't pass stream around	2016-04-05 18:41:38 +02:00
alalazo	2968b60ee0	module file : added autoload and prereq	2016-04-05 18:03:09 +02:00
alalazo	ca7d701007	module file : all the dependencies can affect the run_time environment, not only extendees	2016-04-05 16:10:04 +02:00
alalazo	c352249e30	EnvModules : narrowing the type of exceptions being "handled"	2016-04-05 14:55:05 +02:00
Erik Schnetter	4ce03b75bc	Correct typo	2016-04-05 07:42:23 -04:00

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2882 commits