updated documentation for cflags PR
This commit is contained in:
Gregory Becker
parent
6fba102d7d
commit
74dc7ffe4d
4 changed files with 158 additions and 74 deletions
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@ -102,8 +102,8 @@ that the packages is installed:
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==> adept-utils is already installed in /home/gamblin2/spack/opt/chaos_5_x86_64_ib/gcc@4.4.7/adept-utils@1.0-5adef8da.
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==> Trying to fetch from https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
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######################################################################## 100.0%
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==> Staging archive: /home/gamblin2/spack/var/spack/stage/mpileaks@1.0%gcc@4.4.7=chaos_5_x86_64_ib-59f6ad23/mpileaks-1.0.tar.gz
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==> Created stage in /home/gamblin2/spack/var/spack/stage/mpileaks@1.0%gcc@4.4.7=chaos_5_x86_64_ib-59f6ad23.
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==> Staging archive: /home/gamblin2/spack/var/spack/stage/mpileaks@1.0%gcc@4.4.7 arch=chaos_5_x86_64_ib-59f6ad23/mpileaks-1.0.tar.gz
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==> Created stage in /home/gamblin2/spack/var/spack/stage/mpileaks@1.0%gcc@4.4.7 arch=chaos_5_x86_64_ib-59f6ad23.
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==> No patches needed for mpileaks.
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==> Building mpileaks.
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@ -132,10 +132,10 @@ sites, as installing a version that one user needs will not disrupt
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existing installations for other users.
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In addition to different versions, Spack can customize the compiler,
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compile-time options (variants), and platform (for cross compiles) of
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an installation. Spack is unique in that it can also configure the
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*dependencies* a package is built with. For example, two
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configurations of the same version of a package, one built with boost
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compile-time options (variants), compiler flags, and platform (for
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cross compiles) of an installation. Spack is unique in that it can
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also configure the *dependencies* a package is built with. For example,
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two configurations of the same version of a package, one built with boost
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1.39.0, and the other version built with version 1.43.0, can coexist.
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This can all be done on the command line using the *spec* syntax.
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@ -334,6 +334,11 @@ of libelf would look like this:
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-- chaos_5_x86_64_ib / gcc@4.4.7 --------------------------------
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libdwarf@20130729-d9b90962
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We can also search for packages that have a certain attribute. For example,
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``spack find -l libdwarf +debug`` will show only installations of libdwarf
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with the 'debug' compile-time option enabled, while ``spack find -l +debug``
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will find every installed package with a 'debug' compile-time option enabled.
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The full spec syntax is discussed in detail in :ref:`sec-specs`.
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@ -463,6 +468,26 @@ For compilers, like ``clang``, that do not support Fortran, put
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Once you save the file, the configured compilers will show up in the
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list displayed by ``spack compilers``.
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You can also add compiler flags to manually configured compilers. The
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valid flags are ``cflags``, ``cxxflags``, ``fflags``, ``cppflags``,
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``ldflags``, and ``ldlibs``. For example,::
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...
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chaos_5_x86_64_ib:
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...
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intel@15.0.0:
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cc: /usr/local/bin/icc-15.0.024-beta
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cxx: /usr/local/bin/icpc-15.0.024-beta
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f77: /usr/local/bin/ifort-15.0.024-beta
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fc: /usr/local/bin/ifort-15.0.024-beta
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cppflags: -O3 -fPIC
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...
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These flags will be treated by spack as if they were enterred from
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the command line each time this compiler is used. The compiler wrappers
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then inject those flags into the compiler command. Compiler flags
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enterred from the command line will be discussed in more detail in the
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following section.
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.. _sec-specs:
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@ -480,7 +505,7 @@ the full syntax of specs.
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Here is an example of a much longer spec than we've seen thus far::
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mpileaks @1.2:1.4 %gcc@4.7.5 +debug -qt =bgqos_0 ^callpath @1.1 %gcc@4.7.2
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mpileaks @1.2:1.4 %gcc@4.7.5 +debug -qt arch=bgq_os ^callpath @1.1 %gcc@4.7.2
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If provided to ``spack install``, this will install the ``mpileaks``
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library at some version between ``1.2`` and ``1.4`` (inclusive),
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@ -498,8 +523,12 @@ More formally, a spec consists of the following pieces:
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* ``%`` Optional compiler specifier, with an optional compiler version
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(``gcc`` or ``gcc@4.7.3``)
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* ``+`` or ``-`` or ``~`` Optional variant specifiers (``+debug``,
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``-qt``, or ``~qt``)
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* ``=`` Optional architecture specifier (``bgqos_0``)
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``-qt``, or ``~qt``) for boolean variants
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* ``name=<value>`` Optional variant specifiers that are not restricted to
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boolean variants
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* ``name=<value>`` Optional compiler flag specifiers. Valid flag names are
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``cflags``, ``cxxflags``, ``fflags``, ``cppflags``, ``ldflags``, and ``ldlibs``.
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* ``arch=<value>`` Optional architecture specifier (``arch=bgq_os``)
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* ``^`` Dependency specs (``^callpath@1.1``)
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There are two things to notice here. The first is that specs are
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@ -579,7 +608,7 @@ compilers, variants, and architectures just like any other spec.
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Specifiers are associated with the nearest package name to their left.
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For example, above, ``@1.1`` and ``%gcc@4.7.2`` associates with the
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``callpath`` package, while ``@1.2:1.4``, ``%gcc@4.7.5``, ``+debug``,
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``-qt``, and ``=bgqos_0`` all associate with the ``mpileaks`` package.
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``-qt``, and ``arch=bgq_os`` all associate with the ``mpileaks`` package.
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In the diagram above, ``mpileaks`` depends on ``mpich`` with an
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unspecified version, but packages can depend on other packages with
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@ -635,22 +664,25 @@ based on site policies.
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Variants
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~~~~~~~~~~~~~~~~~~~~~~~
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.. Note::
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Variants are not yet supported, but will be in the next Spack
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release (0.9), due in Q2 2015.
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Variants are named options associated with a particular package, and
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they can be turned on or off. For example, above, supplying
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``+debug`` causes ``mpileaks`` to be built with debug flags. The
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names of particular variants available for a package depend on what
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was provided by the package author. ``spack info <package>`` will
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Variants are named options associated with a particular package. They are
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optional, as each package must provide default values for each variant it
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makes available. Variants can be specified using
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a flexible parameter syntax ``name=<value>``. For example,
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``spack install libelf debug=True`` will install libelf build with debug
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flags. The names of particular variants available for a package depend on
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what was provided by the package author. ``spack into <package>`` will
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provide information on what build variants are available.
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Depending on the package a variant may be on or off by default. For
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``mpileaks`` here, ``debug`` is off by default, and we turned it on
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with ``+debug``. If a package is on by default you can turn it off by
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either adding ``-name`` or ``~name`` to the spec.
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For compatibility with earlier versions, variants which happen to be
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boolean in nature can be specified by a syntax that represents turning
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options on and off. For example, in the previous spec we could have
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supplied ``libelf +debug`` with the same effect of enabling the debug
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compile time option for the libelf package.
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Depending on the package a variant may have any default value. For
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``libelf`` here, ``debug`` is ``False`` by default, and we turned it on
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with ``debug=True`` or ``+debug``. If a package is ``True`` by default
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you can turn it off by either adding ``-name`` or ``~name`` to the spec.
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There are two syntaxes here because, depending on context, ``~`` and
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``-`` may mean different things. In most shells, the following will
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@ -662,7 +694,7 @@ result in the shell performing home directory substitution:
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mpileaks~debug # use this instead
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If there is a user called ``debug``, the ``~`` will be incorrectly
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expanded. In this situation, you would want to write ``mpileaks
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expanded. In this situation, you would want to write ``libelf
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-debug``. However, ``-`` can be ambiguous when included after a
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package name without spaces:
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@ -677,12 +709,35 @@ package, not a request for ``mpileaks`` built without ``debug``
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options. In this scenario, you should write ``mpileaks~debug`` to
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avoid ambiguity.
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When spack normalizes specs, it prints them out with no spaces and
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uses only ``~`` for disabled variants. We allow ``-`` and spaces on
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the command line is provided for convenience and legibility.
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When spack normalizes specs, it prints them out with no spaces boolean
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variants using the backwards compatibility syntax and uses only ``~``
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for disabled boolean variants. We allow ``-`` and spaces on the command
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line is provided for convenience and legibility.
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Architecture specifier
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Compiler Flags
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~~~~~~~~~~~~~~~~~~~~~~~
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Compiler flags are specified using the same syntax as non-boolean variants,
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but fulfill a different purpose. While the function of a variant is set by
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the package, compiler flags are used by the compiler wrappers to inject
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flags into the compile line of the build. Additionally, compiler flags are
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inherited by dependencies. ``spack install libdwarf cppflags=\"-g\"`` will
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install both libdwarf and libelf with the ``-g`` flag injected into their
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compile line.
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Notice that the value of the compiler flags must be escape quoted on the
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command line. From within python files, the same spec would be specified
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``libdwarf cppflags="-g"``. This is necessary because of how the shell
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handles the quote symbols.
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The six compiler flags are injected in the order of implicit make commands
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in gnu autotools. If all flags are set, the order is
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``$cppflags $cflags|$cxxflags $ldflags command $ldlibs`` for C and C++ and
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``$fflags $cppflags $ldflags command $ldlibs`` for fortran.
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Architecture specifiers
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~~~~~~~~~~~~~~~~~~~~~~~
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.. Note::
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@ -690,12 +745,9 @@ Architecture specifier
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Architecture specifiers are part of specs but are not yet
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functional. They will be in Spack version 1.0, due in Q3 2015.
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The architecture specifier starts with a ``=`` and also comes after
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some package name within a spec. It allows a user to specify a
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particular architecture for the package to be built. This is mostly
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used for architectures that need cross-compilation, and in most cases,
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users will not need to specify the architecture when they install a
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package.
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The architecture specifier looks identical to a variant specifier for a
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non-boolean variant. The architecture can be specified only using the
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reserved name ``arch`` (``arch=bgq_os``).
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.. _sec-virtual-dependencies:
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@ -773,6 +825,23 @@ any MPI implementation will do. If another package depends on
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error. Likewise, if you try to plug in some package that doesn't
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provide MPI, Spack will raise an error.
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Specifying Specs by Hash
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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Complicated specs can become cumbersome to enter on the command line,
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especially when many of the qualifications are necessary to
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distinguish between similar installs, for example when using the
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``uninstall`` command. To avoid this, when referencing an existing spec,
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Spack allows you to reference specs by their hash. We previously
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discussed the spec hash that Spack computes. In place of a spec in any
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command, substitute ``/<hash>`` where ``<hash>`` is any amount from
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the beginning of a spec hash. If the given spec hash is sufficient
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to be unique, Spack will replace the reference with the spec to which
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it refers. Otherwise, it will prompt for a more qualified hash.
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Note that this will not work to reinstall a depencency uninstalled by
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``spack uninstall -f``.
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.. _spack-providers:
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``spack providers``
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@ -1002,8 +1071,8 @@ than one installed package matches it), then Spack will warn you:
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$ spack load libelf
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==> Error: Multiple matches for spec libelf. Choose one:
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libelf@0.8.13%gcc@4.4.7=chaos_5_x86_64_ib
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libelf@0.8.13%intel@15.0.0=chaos_5_x86_64_ib
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libelf@0.8.13%gcc@4.4.7 arch=chaos_5_x86_64_ib
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libelf@0.8.13%intel@15.0.0 arch=chaos_5_x86_64_ib
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You can either type the ``spack load`` command again with a fully
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qualified argument, or you can add just enough extra constraints to
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@ -1282,7 +1351,7 @@ You can find extensions for your Python installation like this:
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.. code-block:: sh
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$ spack extensions python
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==> python@2.7.8%gcc@4.4.7=chaos_5_x86_64_ib-703c7a96
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==> python@2.7.8%gcc@4.4.7 arch=chaos_5_x86_64_ib-703c7a96
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==> 36 extensions:
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geos py-ipython py-pexpect py-pyside py-sip
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py-basemap py-libxml2 py-pil py-pytz py-six
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@ -1372,9 +1441,9 @@ installation:
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.. code-block:: sh
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$ spack activate py-numpy
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==> Activated extension py-setuptools@11.3.1%gcc@4.4.7=chaos_5_x86_64_ib-3c74eb69 for python@2.7.8%gcc@4.4.7.
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==> Activated extension py-nose@1.3.4%gcc@4.4.7=chaos_5_x86_64_ib-5f70f816 for python@2.7.8%gcc@4.4.7.
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==> Activated extension py-numpy@1.9.1%gcc@4.4.7=chaos_5_x86_64_ib-66733244 for python@2.7.8%gcc@4.4.7.
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==> Activated extension py-setuptools@11.3.1%gcc@4.4.7 arch=chaos_5_x86_64_ib-3c74eb69 for python@2.7.8%gcc@4.4.7.
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==> Activated extension py-nose@1.3.4%gcc@4.4.7 arch=chaos_5_x86_64_ib-5f70f816 for python@2.7.8%gcc@4.4.7.
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==> Activated extension py-numpy@1.9.1%gcc@4.4.7 arch=chaos_5_x86_64_ib-66733244 for python@2.7.8%gcc@4.4.7.
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Several things have happened here. The user requested that
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``py-numpy`` be activated in the ``python`` installation it was built
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@ -1389,7 +1458,7 @@ packages listed as activated:
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.. code-block:: sh
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$ spack extensions python
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==> python@2.7.8%gcc@4.4.7=chaos_5_x86_64_ib-703c7a96
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==> python@2.7.8%gcc@4.4.7 arch=chaos_5_x86_64_ib-703c7a96
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==> 36 extensions:
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geos py-ipython py-pexpect py-pyside py-sip
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py-basemap py-libxml2 py-pil py-pytz py-six
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@ -1437,7 +1506,7 @@ dependencies, you can use ``spack activate -f``:
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.. code-block:: sh
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$ spack activate -f py-numpy
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==> Activated extension py-numpy@1.9.1%gcc@4.4.7=chaos_5_x86_64_ib-66733244 for python@2.7.8%gcc@4.4.7.
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==> Activated extension py-numpy@1.9.1%gcc@4.4.7 arch=chaos_5_x86_64_ib-66733244 for python@2.7.8%gcc@4.4.7.
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.. _spack-deactivate:
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@ -70,9 +70,9 @@ directory. Here's an example of an external configuration:
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packages:
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openmpi:
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paths:
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openmpi@1.4.3%gcc@4.4.7=chaos_5_x86_64_ib: /opt/openmpi-1.4.3
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openmpi@1.4.3%gcc@4.4.7=chaos_5_x86_64_ib+debug: /opt/openmpi-1.4.3-debug
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openmpi@1.6.5%intel@10.1=chaos_5_x86_64_ib: /opt/openmpi-1.6.5-intel
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openmpi@1.4.3%gcc@4.4.7 arch=chaos_5_x86_64_ib: /opt/openmpi-1.4.3
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openmpi@1.4.3%gcc@4.4.7 arch=chaos_5_x86_64_ib+debug: /opt/openmpi-1.4.3-debug
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openmpi@1.6.5%intel@10.1 arch=chaos_5_x86_64_ib: /opt/openmpi-1.6.5-intel
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This example lists three installations of OpenMPI, one built with gcc,
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one built with gcc and debug information, and another built with Intel.
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@ -108,9 +108,9 @@ be:
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packages:
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openmpi:
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paths:
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openmpi@1.4.3%gcc@4.4.7=chaos_5_x86_64_ib: /opt/openmpi-1.4.3
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openmpi@1.4.3%gcc@4.4.7=chaos_5_x86_64_ib+debug: /opt/openmpi-1.4.3-debug
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openmpi@1.6.5%intel@10.1=chaos_5_x86_64_ib: /opt/openmpi-1.6.5-intel
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openmpi@1.4.3%gcc@4.4.7 arch=chaos_5_x86_64_ib: /opt/openmpi-1.4.3
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openmpi@1.4.3%gcc@4.4.7 arch=chaos_5_x86_64_ib+debug: /opt/openmpi-1.4.3-debug
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openmpi@1.6.5%intel@10.1 arch=chaos_5_x86_64_ib: /opt/openmpi-1.6.5-intel
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buildable: False
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The addition of the ``buildable`` flag tells Spack that it should never build
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@ -31,14 +31,21 @@ platform, all on the command line.
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# Specify a compiler (and its version), with %
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$ spack install mpileaks@1.1.2 %gcc@4.7.3
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# Add special compile-time options with +
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# Add special compile-time options by name
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$ spack install mpileaks@1.1.2 %gcc@4.7.3 debug=True
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# Add special boolean compile-time options with +
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$ spack install mpileaks@1.1.2 %gcc@4.7.3 +debug
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# Cross-compile for a different architecture with =
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$ spack install mpileaks@1.1.2 =bgqos_0
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# Add compiler flags using the conventional names
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$ spack install mpileaks@1.1.2 %gcc@4.7.3 cppflags=\"-O3 -floop-block\"
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Users can specify as many or few options as they care about. Spack
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will fill in the unspecified values with sensible defaults.
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# Cross-compile for a different architecture with arch=
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$ spack install mpileaks@1.1.2 arch=bgqos_0
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Users can specify as many or few options as they care about. Spack
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will fill in the unspecified values with sensible defaults. The two listed
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syntaxes for variants are identical when the value is boolean.
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Customize dependencies
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@ -1221,11 +1221,13 @@ just as easily provide a version range:
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depends_on("libelf@0.8.2:0.8.4:")
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Or a requirement for a particular variant:
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Or a requirement for a particular variant or compiler flags:
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.. code-block:: python
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depends_on("libelf@0.8+debug")
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depends_on('libelf debug=True')
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depends_on('libelf cppflags="-fPIC")
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Both users *and* package authors can use the same spec syntax to refer
|
||||
to different package configurations. Users use the spec syntax on the
|
||||
|
|
@ -1623,21 +1625,21 @@ the user runs ``spack install`` and the time the ``install()`` method
|
|||
is called. The concretized version of the spec above might look like
|
||||
this::
|
||||
|
||||
mpileaks@2.3%gcc@4.7.3=linux-ppc64
|
||||
^callpath@1.0%gcc@4.7.3+debug=linux-ppc64
|
||||
^dyninst@8.1.2%gcc@4.7.3=linux-ppc64
|
||||
^libdwarf@20130729%gcc@4.7.3=linux-ppc64
|
||||
^libelf@0.8.11%gcc@4.7.3=linux-ppc64
|
||||
^mpich@3.0.4%gcc@4.7.3=linux-ppc64
|
||||
mpileaks@2.3%gcc@4.7.3 arch=linux-ppc64
|
||||
^callpath@1.0%gcc@4.7.3+debug arch=linux-ppc64
|
||||
^dyninst@8.1.2%gcc@4.7.3 arch=linux-ppc64
|
||||
^libdwarf@20130729%gcc@4.7.3 arch=linux-ppc64
|
||||
^libelf@0.8.11%gcc@4.7.3 arch=linux-ppc64
|
||||
^mpich@3.0.4%gcc@4.7.3 arch=linux-ppc64
|
||||
|
||||
.. graphviz::
|
||||
|
||||
digraph {
|
||||
"mpileaks@2.3\n%gcc@4.7.3\n=linux-ppc64" -> "mpich@3.0.4\n%gcc@4.7.3\n=linux-ppc64"
|
||||
"mpileaks@2.3\n%gcc@4.7.3\n=linux-ppc64" -> "callpath@1.0\n%gcc@4.7.3+debug\n=linux-ppc64" -> "mpich@3.0.4\n%gcc@4.7.3\n=linux-ppc64"
|
||||
"callpath@1.0\n%gcc@4.7.3+debug\n=linux-ppc64" -> "dyninst@8.1.2\n%gcc@4.7.3\n=linux-ppc64"
|
||||
"dyninst@8.1.2\n%gcc@4.7.3\n=linux-ppc64" -> "libdwarf@20130729\n%gcc@4.7.3\n=linux-ppc64" -> "libelf@0.8.11\n%gcc@4.7.3\n=linux-ppc64"
|
||||
"dyninst@8.1.2\n%gcc@4.7.3\n=linux-ppc64" -> "libelf@0.8.11\n%gcc@4.7.3\n=linux-ppc64"
|
||||
"mpileaks@2.3\n%gcc@4.7.3\n arch=linux-ppc64" -> "mpich@3.0.4\n%gcc@4.7.3\n arch=linux-ppc64"
|
||||
"mpileaks@2.3\n%gcc@4.7.3\n arch=linux-ppc64" -> "callpath@1.0\n%gcc@4.7.3+debug\n arch=linux-ppc64" -> "mpich@3.0.4\n%gcc@4.7.3\n arch=linux-ppc64"
|
||||
"callpath@1.0\n%gcc@4.7.3+debug\n arch=linux-ppc64" -> "dyninst@8.1.2\n%gcc@4.7.3\n arch=linux-ppc64"
|
||||
"dyninst@8.1.2\n%gcc@4.7.3\n arch=linux-ppc64" -> "libdwarf@20130729\n%gcc@4.7.3\n arch=linux-ppc64" -> "libelf@0.8.11\n%gcc@4.7.3\n arch=linux-ppc64"
|
||||
"dyninst@8.1.2\n%gcc@4.7.3\n arch=linux-ppc64" -> "libelf@0.8.11\n%gcc@4.7.3\n arch=linux-ppc64"
|
||||
}
|
||||
|
||||
Here, all versions, compilers, and platforms are filled in, and there
|
||||
|
|
@ -1666,9 +1668,9 @@ running ``spack spec``. For example:
|
|||
^libdwarf
|
||||
^libelf
|
||||
|
||||
dyninst@8.0.1%gcc@4.7.3=linux-ppc64
|
||||
^libdwarf@20130729%gcc@4.7.3=linux-ppc64
|
||||
^libelf@0.8.13%gcc@4.7.3=linux-ppc64
|
||||
dyninst@8.0.1%gcc@4.7.3 arch=linux-ppc64
|
||||
^libdwarf@20130729%gcc@4.7.3 arch=linux-ppc64
|
||||
^libelf@0.8.13%gcc@4.7.3 arch=linux-ppc64
|
||||
|
||||
This is useful when you want to know exactly what Spack will do when
|
||||
you ask for a particular spec.
|
||||
|
|
@ -1908,6 +1910,12 @@ the command line.
|
|||
``$rpath_flag`` can be overriden on a compiler specific basis in
|
||||
``lib/spack/spack/compilers/$compiler.py``.
|
||||
|
||||
The compiler wrappers also pass the compiler flags specified by the user from
|
||||
the command line (``cflags``, ``cxxflags``, ``fflags``, ``cppflags``, ``ldflags``,
|
||||
and/or ``ldlibs``). They do not override the canonical autotools flags with the
|
||||
same names (but in ALL-CAPS) that may be passed into the build by particularly
|
||||
challenging package scripts.
|
||||
|
||||
Compiler flags
|
||||
~~~~~~~~~~~~~~
|
||||
In rare circumstances such as compiling and running small unit tests, a package
|
||||
|
|
@ -2154,12 +2162,12 @@ example:
|
|||
def install(self, prefix):
|
||||
# Do default install
|
||||
|
||||
@when('=chaos_5_x86_64_ib')
|
||||
@when('arch=chaos_5_x86_64_ib')
|
||||
def install(self, prefix):
|
||||
# This will be executed instead of the default install if
|
||||
# the package's sys_type() is chaos_5_x86_64_ib.
|
||||
|
||||
@when('=bgqos_0")
|
||||
@when('arch=bgqos_0")
|
||||
def install(self, prefix):
|
||||
# This will be executed if the package's sys_type is bgqos_0
|
||||
|
||||
|
|
@ -2749,11 +2757,11 @@ build it:
|
|||
$ spack stage libelf
|
||||
==> Trying to fetch from http://www.mr511.de/software/libelf-0.8.13.tar.gz
|
||||
######################################################################## 100.0%
|
||||
==> Staging archive: /Users/gamblin2/src/spack/var/spack/stage/libelf@0.8.13%gcc@4.8.3=linux-ppc64/libelf-0.8.13.tar.gz
|
||||
==> Created stage in /Users/gamblin2/src/spack/var/spack/stage/libelf@0.8.13%gcc@4.8.3=linux-ppc64.
|
||||
==> Staging archive: /Users/gamblin2/src/spack/var/spack/stage/libelf@0.8.13%gcc@4.8.3 arch=linux-ppc64/libelf-0.8.13.tar.gz
|
||||
==> Created stage in /Users/gamblin2/src/spack/var/spack/stage/libelf@0.8.13%gcc@4.8.3 arch=linux-ppc64.
|
||||
$ spack cd libelf
|
||||
$ pwd
|
||||
/Users/gamblin2/src/spack/var/spack/stage/libelf@0.8.13%gcc@4.8.3=linux-ppc64/libelf-0.8.13
|
||||
/Users/gamblin2/src/spack/var/spack/stage/libelf@0.8.13%gcc@4.8.3 arch=linux-ppc64/libelf-0.8.13
|
||||
|
||||
``spack cd`` here changed he current working directory to the
|
||||
directory containing the expanded ``libelf`` source code. There are a
|
||||
|
|
|
|||
Loading…
Reference in a new issue