Gregory Lee
bcea5e7ba4
mpa and fgfs: add v1.1.1 ( #23173 )
2021-04-23 16:09:26 +02:00
snehring
c3fbe0f026
gmap-gsnap: add v2021-03-08 ( #23178 )
2021-04-23 16:02:56 +02:00
Glenn Johnson
a276f9405c
augustus: add v3.4.0 and update package ( #22879 )
...
- add version 3.4.0
- add patch for bam2wig when version 3.4.0
- url format changed again, hopefully stable now
- added missing python dependency when version >3.3.1
- have older version compile with htslib, samtools ,bcftools
- new dependencies for version 3.4.0
- sqlite
- mysql-client
- mysqlpp
- lp-solve
- suite-sparse
- refactored filtering code
- set python interpreter in scripts
2021-04-23 15:56:22 +02:00
Robert Mijakovic
ce6a617706
shadow: add v4.8.1 ( #23185 )
...
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-23 15:51:35 +02:00
Tamara Dahlgren
19b9789b45
fontconfig: resolve tarball issue fcobjshash.h ( #23190 )
2021-04-23 15:37:25 +02:00
Greg Becker
80c8b11d77
mpich: post-configure patch for cce ( #23193 )
2021-04-23 15:22:39 +02:00
Valentin Volkl
30c81b127c
pythia8: add v8304, fix copy-paste errors in configure arguments ( #23028 )
2021-04-23 14:55:04 +02:00
Cameron Stanavige
93976d018d
er: add v0.0.4 ( #23022 )
...
This adds that new version to the package, updates the url, and
updates the hash of v0.0.3 for the new url.
This also updates the KVTree dependency as MPI is required to be
enabled in KVTree for er to work.
rankstr is now also required by er for recently added tests.
2021-04-23 06:46:18 -06:00
Valentin Volkl
5641923dfa
py-particle: add v0.14.1 ( #23216 )
2021-04-23 14:15:49 +02:00
Tamara Dahlgren
6f25e5242e
Docs: Updated copyrights in files still using 2020 as ending year ( #23215 )
2021-04-22 22:23:09 -07:00
Robert Pavel
e64fe11506
Initial Version of Ascent Miniapp Spackage ( #23170 )
...
Initial version of ascent miniapp spackage
2021-04-22 18:35:43 -07:00
Mark W. Krentel
09028f7407
hpctoolkit: fix patch from #22864 ( #23149 )
...
PR #22864 added a patch to hpctoolkit to fix an issue with gcc 10.x, and the patch was applied to all revs unconditionally. But this was fixed in hpctoolkit master on Aug 11, 2020, so the patch should only apply to old revs.
Fixes #22951 .
2021-04-22 19:07:13 -06:00
Itaru Kitayama
010e5761d6
NEST package: add version @master; fix ~python ( #23211 )
2021-04-22 14:35:00 -07:00
estewart08
b0e4950555
[AMD] - rocm-openmp-extras 4.1 updates. ( #22998 )
...
Update package with 4.1 sha keys.
Use variant to disable openmp in the build of llvm-amdgpu.
Set CPATH, LIBRARY_PATH so that clang knows to look in the rocm-openmp-extras for headers/libraries.
Disable flang warnings as Spack thinks they are errors.
In ROCm 4.1, the plugin changed names from hsa -> amdgpu.
Update HSA_INCLUDE for 4.1.0.
2021-04-22 12:11:39 -07:00
Kelly (KT) Thompson
c3733771e4
Update patchfile to allow xl+cuda builds. ( #23201 )
2021-04-22 12:10:12 -06:00
Harmen Stoppels
b904e9aa1c
SIRIUS 7.2.1 ( #23199 )
2021-04-22 11:40:25 -06:00
Massimiliano Culpo
89ae2cb365
minisign: add v0.9 and v0.8 ( #23202 )
2021-04-22 10:31:56 -07:00
Frank Willmore
60c909cee5
prepend missing self. to spec ( #23172 )
2021-04-22 11:40:17 -05:00
Gregory Lee
7322a9e3be
boost: only apply boostrap-toolset.patch for version 1.75 ( #23174 )
2021-04-21 21:25:07 -06:00
Glenn Johnson
e0549f5e88
ncbi-rmblastn: add v2.11.0 ( #22788 )
2021-04-22 05:20:51 +02:00
Jen Herting
5bec197de1
New package: r-assertive-files ( #23183 )
...
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:24:22 -05:00
Jen Herting
ae045ac071
New package: r-assertive-matrices ( #23184 )
...
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:20:36 -05:00
Jen Herting
da520d7bb3
New package: r-assertive-datetimes ( #23180 )
...
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:18:45 -05:00
Harmen Stoppels
730fbae463
Disable multithreaded version of zstd by default ( #23167 )
...
* Disable multithreaded version of zstd by default
* zstd pthreads by default again! but configurable, and turned off in GCC
2021-04-21 22:17:08 +02:00
Jen Herting
ee76c329f8
New package: r-assertive-numbers ( #23181 )
...
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 19:30:31 +00:00
Sergei Shudler
75fd886f62
MAGMA: Add e4s testsuite-inspired smoke test ( #23011 )
2021-04-21 11:12:59 -07:00
Massimiliano Culpo
d670f3aa40
lbann: remove deprecated variants in opencv ( #23176 )
2021-04-21 17:28:33 +00:00
Cameron Stanavige
0ea1b9705f
axl: add version 0.4.0 ( #23044 )
...
* Swap .zip downloads with .tar.gz downloads (and update download
hashes)
* New variants: intel_cppr and bbapi_fallback support
2021-04-21 10:24:30 -07:00
Cameron Stanavige
44d995b6d5
unifyfs: add version 0.9.2 ( #22390 )
...
UnifyFS has been integrated with updated versions of its mochi-margo
dependency (and mochi-margo's mercury and libfabric dependencies).
This removes support for version 0.9.0
2021-04-21 10:20:41 -07:00
Harmen Stoppels
febeca2b05
Fix GCC with zstd on CCentOS 7 where it doesn't consider the lib64 directory ( #23169 )
2021-04-21 10:25:14 -06:00
Cyrus Harrison
a97ef832d9
conduit package: avoid issue with subclass case ( #23156 )
...
* avoid issue with subclass case
* catch named exception
2021-04-21 10:21:21 -05:00
Adam J. Stewart
8182994cee
OpenCV: overhaul package ( #22340 )
2021-04-21 03:01:04 -06:00
Brian Van Essen
4ee3934fb3
lbann: requirements of the new variants for the legacy versions ( #23159 )
...
Fixed the range of conduit for legacy versions of LBANN.
2021-04-20 18:33:05 -07:00
Brian Van Essen
fd9918ab6f
Removed unnecessary code to put cuda_arch in DiHydrogen ( #23158 )
...
These were deprecated when the custom cuda_arch list was
removed. Also fixed up the Aluminum dependencies for Hydrogen and
DiHydrogen. Turns out that Aluminum v0.6.0 didn't have a correct
version in CMake and thus the interaction with older versions of
Hydrogen and DiHydrogen needed to be corrected.
2021-04-20 16:54:12 -07:00
Mansour Moufid
73d1c0911c
libsigsegv: update to version 2.13. ( #23155 )
2021-04-20 22:39:10 +00:00
Ethan Stam
293c8bf621
Use xz instead of lzma. XZ utils provides lzma dev files ( #23144 )
2021-04-20 15:39:47 -04:00
Cameron Stanavige
5931995364
redset: add versions 0.0.5 and 0.0.4 ( #22977 )
...
Also update the url and hash of v0.0.3.
2021-04-20 12:04:58 -07:00
Cameron Stanavige
f4d8382a4f
shuffile: add version 0.0.4 ( #22976 )
...
Also update the url and hash for v0.0.3.
2021-04-20 12:03:58 -07:00
KoyamaSohei
fa06dbb324
New package: pmemkv
2021-04-20 11:52:36 -07:00
Sinan
d0dcde7c69
Package libsecret: turn off gobj variant by default ( #23070 )
...
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-04-20 11:49:05 -07:00
miheer vaidya
58789130a8
emacs package: add version @master ( #23075 )
2021-04-20 11:37:38 -07:00
Shintaro Iwasaki
a42c11ff0b
argobots: support new variants ( #23133 )
2021-04-20 18:23:30 +00:00
iarspider
0fec636bf4
oracle-instant-client package: add dependency on libaio ( #23080 )
2021-04-20 11:22:51 -07:00
Massimiliano Culpo
750fa8d810
etsf-io: added missing mpi variant ( #23083 )
...
The variant was mentioned in a depends_on directive,
but never declared
2021-04-20 11:21:30 -07:00
Massimiliano Culpo
67afe7016f
angsd: fix typo in variants ( #23081 )
2021-04-20 11:20:23 -07:00
Massimiliano Culpo
7dc9a0082b
geopm: remove reference to nonexistent variant ( #23084 )
2021-04-20 11:19:29 -07:00
Glenn Johnson
afd69866d1
New package: r-mcmcpack ( #23139 )
2021-04-20 11:17:49 -07:00
Glenn Johnson
25a9a40a12
New package: r-missmethyl ( #23140 )
2021-04-20 11:16:59 -07:00
Glenn Johnson
639d66720f
New package: r-projpred ( #23141 )
2021-04-20 11:15:40 -07:00
Massimiliano Culpo
8058aecd2a
lammps: fix typo in variant name ( #23085 )
...
In two conflicts we used +adios instead of +user-adios
2021-04-20 11:55:29 -06:00
