Commit graph

32056 commits

Author SHA1 Message Date
Massimiliano Culpo
46466302a9
Pin black to 22.12.0 to avoid spurious style changes (#35282)
We need to sync changes on major versions with
spackbot, to avoid the bot saying everything is
allright and have CI failing nonetheless.
2023-02-01 15:45:12 +01:00
Erik Heeren
5e39acea16
py-equation: new package (#35198)
* py-equation: new package

* py-equation: add variants for extra dependencies
2023-02-01 00:02:11 -06:00
Thomas Bouvier
cfdf0b6987
nccl: v2.15.5-1, v2.16.2-1 (#35248)
* `nccl`: v2.15.5-1, v2.16.2-1
* Fix wrong sha256
* Revert checksums (after GitHub has algorithm change reverted)
2023-01-31 19:17:20 -08:00
Erik Schnetter
6be6935671
libffi: New version 3.4.4 (#35087) 2023-01-31 16:46:41 -08:00
eugeneswalker
68233db9f6
Revert "flex%oneapi@2023.0.0: -Wno-error=implicit-function-declaration (#34900)" (#35181)
This reverts commit 62f83dfb6d.
2023-01-31 16:37:10 -08:00
renjithravindrankannath
aea2c73b04
Adding rocm-opencl prefix lib path to LD_LIBRARY_PATH for run_environment (#35011) 2023-01-31 16:26:42 -08:00
Harmen Stoppels
5dc5db6679
Fix awscli and deps (#35158)
* py-docutils/py-pyyaml specify python 3.11 compat

* bump awscli / py-botocore

* fix botocore again

* review fixes

* .
2023-01-31 13:32:53 -08:00
Alan Williams
51702a725b
Add trilinos-solvers variant to nalu-wind package. (#35267)
* Add trilinos-solvers variant to nalu-wind package.
   This allows nalu-wind to be built against a trilinos installation
   which doesn't have amesos2, belos, ifpack2, or muelu enabled, if
   the nalu-wind user provides the spec 'nalu-wind@master~trilinos-solvers'
   Support for these solver-packages remains on by default.
* Fixed a style issue reported by CI.
* Incorporate change in wording suggested from review comments.
   ... to clarify that at least one, or both, of hypre and/or
   trilinos-solvers must be enabled. The error condition is if
   both are disabled.
* That style checker is picky...
* It really did want a trailing comma...
2023-01-31 12:42:43 -08:00
Erik Heeren
931c0edaf4
py-munkres: new package (#35259) 2023-01-31 13:41:23 -06:00
eugeneswalker
689bdd6f36
strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc (#35153)
* strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc

* strumpack@7.0.1+rocm^mpich: patch in upstream commit
2023-01-31 10:51:02 -08:00
Erik Heeren
a426db06e7
py-matplotlibscalebar: new package (#35242)
* py-matplotlibscalebar: new package

* py-matplotlibscalebar: style

* py-matplotlib-scalebar: review remarks
2023-01-31 08:27:16 -08:00
Erik Heeren
4b12d015e1
py-jinja2-cli: new package (#35238)
* py-jinja2-cli: new package

* Update var/spack/repos/builtin/packages/py-jinja2-cli/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-31 08:17:17 -08:00
Jen Herting
ecd4eac184
[py-protoc-gen-swagger] new package (#35241)
* [py-protoc-gen-swagger] new package

* [@spackbot] updating style on behalf of qwertos

---------

Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-01-30 15:20:51 -08:00
Jean-Baptiste Skutnik
4d502c8ff7
Update py-docker package (#35217)
* Add py-docker@5:

* [@spackbot] updating style on behalf of spoutn1k

* Ignore `tls` variant

* Update var/spack/repos/builtin/packages/py-docker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* `py-docker`: `py-paramiko` version fix

---------

Co-authored-by: spoutn1k <spoutn1k@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-30 15:20:04 -08:00
kent-cheung-arm
227c6061e5
arm-forge: add 22.1.3 (#35200) 2023-01-30 12:36:39 -08:00
Adam J. Stewart
3453f59ba3
py-fiona: add v1.9.0 (#35247) 2023-01-30 13:56:25 -06:00
Alex Richert
3201b4e2a1
HDF5 static (#34577)
* Add HDF5 static support for netcdf-c
* Update var/spack/repos/builtin/packages/hdf5/package.py
   Apply pkgconfig fix for all libraries, not just lz

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>

* Update package.py
   Fix pkg config templates
* remove subprocess+2 lines
* Try netcdf-c changes only

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-01-30 11:51:07 -08:00
Adam J. Stewart
80d26168b5
py-torchgeo: add v0.4.0 (#35155)
* py-torchgeo: add v0.4.0
* Add missing java dep
2023-01-30 11:47:10 -08:00
Adam J. Stewart
67040e79c5
py-protobuf: various updates (#35188) 2023-01-30 13:17:31 -06:00
Adam J. Stewart
a116775ff3
py-shapely: add v2.0.1 (#35246) 2023-01-30 11:08:08 -08:00
Erik Heeren
de2aaeb26f
py-mariadb: new package (#35240)
* py-mariadb: new package

* py-mariadb: style
2023-01-30 13:07:15 -06:00
Erik Heeren
830e3211e5
py-hjson: fix typo in latest version (#35234) 2023-01-30 12:49:07 -06:00
Tamara Dahlgren
6b3b7f8b7f
Bugfix: Update Petsc Python dependency (#35216)
* Bugfix: Update Petsc python dependency for at least 3.18:
* Update var/spack/repos/builtin/packages/petsc/package.py

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-01-30 10:21:50 -08:00
eugeneswalker
99f3716346
e4s: add and prefer boost +python +filesystem +iostreams +system (#35180) 2023-01-30 07:37:35 -08:00
Cory Bloor
4f6ef3b698
rocblas: remove unnecessary conflicts (#35232)
The gfx906:xnack- and gfx908:xnack- targets were introduced in ROCm 4.1
and replaced gfx906 and gfx908 as default build targets, but the library
can still be built for gfx906 and gfx908 if requested.
2023-01-30 16:08:36 +01:00
Ken Raffenetti
2dc020af31
mpich: add 4.0.3 and 4.1 releases (#35218) 2023-01-30 14:01:13 +01:00
snehring
17f2d66285
montage: fixing compilation issues for newer gcc versions (#35220) 2023-01-30 13:57:41 +01:00
simonleary-umass-edu
32f480936a
apptainer: update constraint on go dependency (#35230) 2023-01-30 13:56:52 +01:00
Satish Balay
481b598963
hypre: Update URL using citation instructions from https://github.com/hypre-space/hypre/wiki/Citing-hypre (#35225) 2023-01-30 11:29:06 +01:00
John W. Parent
4b186df5b4
adios2: allow building on Windows (#35102) 2023-01-30 11:15:54 +01:00
aleixrocks
f4dac7cd4c
OmpSs: add v2022.11 (#35228) 2023-01-30 11:11:36 +01:00
eugeneswalker
48a63719b2
e4s oneapi: use oneapi@2023.0.0 (#34634) 2023-01-29 13:22:14 -08:00
Alec Scott
f576b4b6c5
gmake: Fix too many levels of symbolic links error (#35224)
* gedit: Fix too many levels of symlinks error

* Fix package formatting with black
2023-01-29 15:00:35 -06:00
eugeneswalker
9f5d9266e6
e4s: add power stack (#32710)
* e4s: restore builds builds

* gitlab ci: allow UO to build protected binaries for signing

* use newer image; comment out failing builds

* gitlab-ci: Some tweaks for e4s power builds

- fix tags (no longer require generate jobs to run on aws)
- fix resource requests for generation jobs resource requests
- remove SPACK_SIGNING_KEY from protected power build jobs
- update UO signing key path
- change the CDash build group to reflect stack name
- retry pipeline generation jobs *always*

* correct double packages: section

* gitlab-ci:script: modernize

* remove new gnu make, not for ppc64le

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-01-29 10:53:02 -06:00
John W. Parent
28c4809a8f
freetype: add CMake support (#35107) 2023-01-28 10:32:17 -08:00
Michael Kuhn
57d6b70226
xz: add 5.4.1 and 5.2.10 (#35172) 2023-01-28 08:32:19 -08:00
Ben Cowan
508fcd8240
Added newer versions of PyAMG and added dependencies for 4.2 and later. (#35185)
* Added newer versions of PyAMG and added dependencies for 4.2 and later.

* Fixed dependencies.
2023-01-27 13:11:21 -08:00
Sebastian Grimberg
bec79d9ee1
New Spack package: Palace (#35189) 2023-01-27 12:47:18 -08:00
Jean-Baptiste Skutnik
27775163ca
Added e4s-cl package (#35117)
* Added e4s-cl package

* Version order change

* Added e4s-cl dependencies

* Added python-sotools dependency

* [@spackbot] updating style on behalf of spoutn1k

* Add missing versions to py- packages

* Fix style

* [@spackbot] updating style on behalf of spoutn1k

* Update var/spack/repos/builtin/packages/e4s-cl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/e4s-cl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-python-sotools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add docker removing patch for e4s-cl

Co-authored-by: spoutn1k <spoutn1k@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-27 10:02:39 -08:00
Erik Heeren
b1cf512d78
py-nexusforge: add with dependencies (#35208)
* py-nexusforge: add with dependencies

* py-pyshacl, py-sseclient: more style

* py-hjson, py-nexus-sdk, py-nexusforge, py-puremagic: more style

* py-pyshacl: license update

* py-nexusforge, py-prettytable, py-pyshacl: review remarks

* py-nexusforge: make the variant mean something

Too hasty to commit...
2023-01-27 09:12:31 -08:00
Erik Heeren
0bfd06d0b6
Py ipyparallel (#35178)
* py-ipyparallel: add 8.4.1, which builds with py-hatchling

* py-ipyparallel: copyright and redundant py-setuptools dependency

* py-ipyparallel: py-packaging was dropped after 8.0.0
2023-01-27 08:52:23 -08:00
Jose E. Roman
367bd4d670
New patch release SLEPc 3.18.2 (#35176) 2023-01-27 07:44:19 -07:00
Mosè Giordano
8f359df2d3
libblastrampoline: Add v5.3.0 and v5.4.0 (#35194) 2023-01-27 09:51:18 +01:00
Massimiliano Culpo
cc2ae9f270
Add a maintainers directive (#35083)
fixes #34879

This commit adds a new maintainer directive,
which by default extend the list of maintainers
for a given package.

The directive is backward compatible with the current
practice of having a "maintainers" list declared at
the class level.
2023-01-27 07:51:24 +01:00
Erik Heeren
75f1077b4b
py-nptyping, py-typish: add package (#35126)
* py-typish: add package

* py-typish: style fix

* py-nptyping: new package

* py-nptyping, py-typish: review remarks

* py-nptying: style

* py-nptyping: generic url, avoid pypi for now
2023-01-26 10:21:38 -06:00
Erik Heeren
b1e6507060
py-deap: add 1.3.3 (#35175) 2023-01-26 10:19:03 -06:00
Adam J. Stewart
2981b4e5ee
py-rasterio: add v1.3.5 (#35167) 2023-01-26 15:41:05 +01:00
Harmen Stoppels
6847d73504
Cleanup of binary text relocation (#34188)
Move the relocation of binary text in its own class

Drop threaded text replacement, since the current bottleneck 
is decompression. It would be better to parallellize over packages,
instead of over files per package.

A small improvement with separate classes for text replacement is that we
now compile the regex in the constructor; previously it was compiled per
binary to be relocated.
2023-01-26 12:18:53 +01:00
Mosè Giordano
eeba92e788
wrf: Fix patching of config file when using GCC for v3.9.1.1 (#35140)
The regex doesn't actually work because dollar signs and parentheses have to be
escaped.  Also, compiling with OpenMPI requires defining the macro
`MPI2SUPPORT`.
2023-01-26 11:59:54 +01:00
Massimiliano Culpo
84917cfa79
Extract functions to read spec files from different format (#35094)
This commit makes explicit the format version of the spec file
we are reading from.

Before there were different functions capable of reading some
part of the spec file at multiple format versions. The decision
was implicit, since checks were based on the structure of the
JSON without ever checking a format version number.

The refactor makes also explicit which spec file format is used
by which database and lockfile format, since the information is
stored in global mappings.

To ensure we don't change the hash of old specs, JSON representations
of specs have been added as data. A unit tests checks that we read
the correct hash in, and that the hash stays the same when we
re-serialize the spec using the most recent format version.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-01-26 10:40:46 +01:00