Commit graph

32056 commits

Author SHA1 Message Date
SXS Bot
38c321abb3
spectre: add v2023.02.09 (#35426)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2023-02-10 10:05:14 -08:00
Zack Galbreath
82041ac5a3
Restore our ability to submit build/test results to CDash from GitLab CI (#35328)
* Restore our ability to submit build/test results to CDash from GitLab CI

* Don't use CDash upload URL as report filename
2023-02-10 12:01:05 -06:00
Adam J. Stewart
ecf93c77ae
py-fiona: add v1.9.1 (#35433) 2023-02-10 09:32:25 -08:00
Teo
34e42d5540
bug fix: halide -> Halide or something. (#35431) 2023-02-10 08:33:04 -08:00
Alex Richert
cdcbf7dc46
Add AlexanderRichert-NOAA as ESMF maintainer (#35430) 2023-02-10 08:23:06 -08:00
Richard Berger
e25501f76c
singularity-eos: add v1.7.0, cleanup package (#35163)
* singularity-eos: add v1.7.0, cleanup package
* Update var/spack/repos/builtin/packages/singularity-eos/package.py
---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: rbberger <rbberger@users.noreply.github.com>
2023-02-10 07:58:08 -08:00
Vanessasaurus
7fec7cd013
Automated deployment to update package flux-core 2023-02-09 (#35414)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-02-10 02:03:50 -08:00
simonleary-umass-edu
3d881dbad7
meme add perl-xml-simple dependency (#35408)
Meme 4.5.0 has the first occurrence of the string
```
use XML::Simple
```
I found this by doing a binary search manually extracting tarballs until `grep` came up empty.
2023-02-10 01:21:40 -08:00
Sébastien Valat
c818e36d79
malt: new package (versions : 1.2.1) (#35272)
* malt: new package (versions : 1.2.1)
* malt: Fix remarks on new package (versions : 1.2.1)
* malt: Fix PR remarks by removing un-needed functions overriding
* malt: Fix NodeJs => NodeJS
* Use new maintainers syntax.
2023-02-09 19:58:28 -08:00
Sangu Mbekelu
4fbbb23933
new ampltools package (#35357)
* new ampltools package

* [@spackbot] updating style on behalf of sm2939

* Update and rename var/spack/repos/builtin/py-ampltools/package.py to var/spack/repos/builtin/packages/py-ampltools/package.py

Edited file to change copyright year/dependencies and edited directory

---------

Co-authored-by: Sangu Mbekelu <s.mbekelu9@gmail.com>
2023-02-09 19:57:42 -08:00
H. Joe Lee
b35af7d9e7
protobuf: add 3.21.12. (#35396)
* protobuf: add 3.21.12.
* protobuf: add maintainer and fix checksum
2023-02-09 16:11:24 -08:00
eugeneswalker
f7de22eb14
gpu test stack: add test w/ ^cuda@12 builds on A100 w/ newer driver (#35375)
* gpu test stack: test cuda@12 builds on A100 w/ newer driver

* get gpu info via nvidia-smi;

* kokkos+cuda^cuda@12 has genuine failure
2023-02-09 12:18:03 -07:00
Bill Williams
72f57ffede
Score-P updates for version 8.0 (#35256)
* Add Score-P 8.0 and Cube 4.7/4.8 packages.
* Score-P 8.0 requires 4.8, not 4.7, Cube packages
* Add maintainer
* Add CUDA and HIP variants. Add version checks for CUDA (Score-P 8 requires CUDA 7), ROCm (variant only valid as of Score-P 8), and MPI (Score-P 7 requires at least version 2.2 of the MPI standard).
* Deprecate everything pre-7.0.
* Fix HIP dependencies and enable CUDA and HIP variants for configure.
* Deprecate OTF2 pre-2.3 and Cube pre-4.6
2023-02-09 10:50:50 -08:00
Loïc Pottier
12f43380b9
rabbitmq-c: fix bug when POLT < 1.14 compilation failed (POPT_ARG_ARGV undeclared) (#35403)
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
2023-02-09 10:24:48 -08:00
Frank Willmore
ffdc85e8ce
Update package.py (#35402)
adding explicit dependency on X11 (needed when there is not a system install)
2023-02-09 10:04:15 -08:00
John W. Parent
259a32e5e4
Windows: MSMPI package fixes (#35112)
* Add "fake" mpi compiler wrappers to msmpi: msmpi doesn't actually
  provide wrappers, so this just assigns the wrappers to be whatever
  compiler that a dependent is using. Packages referencing the
  wrappers would otherwise break. This is assumed to be workable
  because build scripts will need to assemble appropriate information
  to pass to the compiler anyway
* Fix msmpi detection stanza ('executable' is not the correct name of
  the property)
* Fix compiler pkg dereference
2023-02-09 09:53:59 -08:00
Teo
8c0b8c785f
tiramisu: new package (#35364)
* add initial package.

* Update package.py

* Update var/spack/repos/builtin/packages/tiramisu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tiramisu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tiramisu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Hopefully this will be fine.

* Update package.py

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/tiramisu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-09 09:09:30 -08:00
snehring
02d3bd782d
py-netcdf4: adding version 1.6.2 (#35393)
* py-netcdf4: adding version 1.6.2

* py-netcdf4: updating setuptools dep.
2023-02-08 18:10:28 -08:00
Erik Heeren
b6906be846
cvise: new package (#35366)
* cvise: new package
* cvise: colordiff as optional dependency
* cvise: remove old versions and correctly name master version
* cvise: update license date
* cvise: use maintainers directive
* Remove @olupton as maintainer

After live discussion: it's been too long since he did anything with this package.
2023-02-08 16:13:32 -08:00
H. Joe Lee
a0ce6f7890
protobuf-c: add 1.4.1 version (#35397)
* protobuf-c: add 1.4.1 version
* protobuf-c: add maintainers
2023-02-08 15:49:59 -08:00
Rocco Meli
09cf265ff4
Add new versions of spglib (#35332)
* add spglib versions
* add maintainer
* fmt
* maintainer
* url
2023-02-08 15:37:47 -08:00
Adam J. Stewart
0d72b29193
wrf: fix v4.4.2 checksum (#35401) 2023-02-08 14:24:24 -08:00
Wouter Deconinck
7f1467e795
dd4hep: new version 1.24, depends_on podio@0.16: (#35384)
* dd4hep: new version 1.24, depends_on podio@0.16:
* Update var/spack/repos/builtin/packages/dd4hep/package.py

Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2023-02-08 10:51:22 -08:00
Mikael Simberg
f89cd29054
Add whip 0.2.0 (#35390) 2023-02-08 10:36:05 -08:00
Matthieu Dorier
89720583c3
[mochi-margo] Added version 0.12.1 (#35392) 2023-02-08 10:33:51 -08:00
Adam J. Stewart
7e78efcc44
spack help --spec: fix indentation (#35383) 2023-02-08 08:46:56 -08:00
Dan Lipsa
126accfce1
Fix external freetype that provides freetype-config.cmake (#35363)
* Fix external freetype that provides freetype-config.cmake

---------

Co-authored-by: Dan Lipsa <dan.lipsa@khq.kitware.com>
2023-02-08 10:00:14 -06:00
Massimiliano Culpo
27c2ff6c64
Ensure we print the correct branch number for tutorials (#35371) 2023-02-08 09:46:21 +01:00
Scott Wittenburg
9bde77199c
bindist: use append as a method, not assignable attr (#35379) 2023-02-08 09:42:28 +01:00
Adam J. Stewart
f5ed18f6a3
py-installer: bootstrap without pip (#35341)
* py-installer: bootstrap without pip

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-02-07 22:30:06 -06:00
Christian Glusa
ccd11666c6
py-gmsh-interop: Fix PyPI link (#35381) 2023-02-07 20:23:41 -08:00
Christian Glusa
df80cffafa
New package: PyNucleus & dependencies (#35327)
* Add py-scikit-sparse package

* Add py-gmsh-interop package

* Add py-modepy package

* Add py-pymbolic package

* Add py-meshpy package

* Add py-pynucleus package

* Add new version of py-pytools
2023-02-07 14:12:15 -08:00
Adam J. Stewart
b52d4b8abf
py-symengine: setuptools 61+ not yet working (#35368)
* py-symengine: setuptools 61+ not yet working
* symengine still required for master
2023-02-07 11:49:07 -08:00
Teo
96624d1490
halide: new package (#35254)
* add halide package.

* some style changes.

* small fix

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

add comment to requirements.txt

* Update package.py

Fix version order.

* Update package.py

style

* Update package.py

Removed unneeded vars.

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix some deps

* Update package.py

* Fix finding llvm cmake info

* Update package.py

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-07 13:12:29 -06:00
Dan Lipsa
1648968514
Windows: Fix spack.bat handling of env commands (#35143)
This PR enables the successful execution of the spack binary cache
tutorial on Windows. It assumes gnupg and file are available (they
can be installed with choco).

* Fix handling of args with quotes in spack.bat
* `file` utility can be installed on Windows (e.g. with choco): update
  error message accordingly
2023-02-07 11:04:14 -08:00
Paul Kuberry
8358f430a4
xyce: change cmake cxx compiler variable (#35365) 2023-02-07 14:00:15 -05:00
Adam J. Stewart
ec045f993b
py-fastrlock: add v0.8.1 (#35370) 2023-02-07 11:23:07 -07:00
Mosè Giordano
7fe2039b01
texinfo: Require ncurses (#35356)
I don't know if this is new in version 7.0, but to build `info`, which is a required executable at the end of the recipe, it is necessary to have a terminal library, otherwise you get
```
[...]
checking for tgetent in -ltinfo... no
checking for tgetent in -lncurses... no
checking for tgetent in -lcurses... no
checking for tgetent in -ltermlib... no
checking for tgetent in -ltermcap... no
checking for tgetent in -lterminfo... no
configure: WARNING: info needs a terminal library, one of: tinfo ncurses curses termlib termcap terminfo
[...]
configure: WARNING: Could not find a terminal library among tinfo ncurses curses termlib termcap terminfo
configure: WARNING: The programs from `info' directory will not be built.
```
then compilation runs, `info` is not built and installation fails according to Spack because the required executable is missing.
2023-02-07 05:27:21 -08:00
dependabot[bot]
25cb55ccd9
build(deps): bump docker/build-push-action from 3.3.0 to 4.0.0 (#35252)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3.3.0 to 4.0.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](37abcedcc1...3b5e8027fc)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-02-07 08:17:53 +01:00
dependabot[bot]
d4e075f667
build(deps): bump docker/setup-buildx-action from 2.2.1 to 2.4.1 (#35354)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.2.1 to 2.4.1.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](8c0edbc76e...f03ac48505)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-02-07 08:17:10 +01:00
Wouter Deconinck
ae98d2ba2f
Support packages for using scitokens on OSG (#35334)
* Support packages for using scitokens on OSG

The Open Science Grid (OSG)  encourages scitokens to provide
certain services (e.g. writing to xrootd). Spack already
supports this through scitokens-cpp and xrootd +scitokens-cpp.

This adds py-htgettoken, a python utility to get a scitoken
from a vault through web authentication. To support htgettoken,
this also adds py-gssapi.

This also adds the OSG CA cert collection which is typically
at /etc/grid-security but pointed to in user installations by
the X509_CERTS_DIR variable.

This allows userspace through spack for functionality that
otherwise depends on installing the RPMs provided by OSG.

* fine, I'll fix style myself then

* fix maintainers

* py-gssapi: version before depends_on

* remove list_url

* add documentation on reason for git describe version numbers

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* better BEARER_TOKEN definition

* import os

* remove older version that don't build with setuptools

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-06 23:23:03 -06:00
snehring
8e49bf0c5b
wps: adding version 4.4 (#35358) 2023-02-06 19:22:41 -08:00
Paul Kuberry
1bb119dbd7
xyce: add version 7.6.0 and RPATH patch for prior (#35360) 2023-02-06 19:17:31 -08:00
Matthias Wolf
a7f39da5db
Fix path handling in prefix inspections (#35318)
At least with ZSH, prefix inspections containing `./bin` result in a
`$PREFIX/./bin` and result in strange `$PATH` handling.

I.e., `module load git` will prepend `/path/to/git/./bin`, `which git`
will find the right executable, but `git --version` will print the
system one. Normalize the relative path to avoid this behavior.

See also spack/spack#31867.
2023-02-06 19:12:30 -08:00
Rocco Meli
1d3a74d926
freesasa: add new package (#35192)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-06 18:52:45 -08:00
Rocco Meli
0448f18ab2
maeparser: add new package (#35191)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-06 18:52:23 -08:00
Daniele Colombo
2516ed181a
relion: add patch to repair DoublePrec_CPU=OFF build (#35317)
* relion: add patch to repair DoublePrec_CPU=OFF build
* relion: added maintainer

Co-authored-by: Daniele Colombo <daniele.colombo@fht.org>
2023-02-06 15:32:06 -08:00
Sreenivasa Murthy Kolam
7740b37923
rocm llvm-amdgpu package - Build libcxx and libcxxabi thru LLVM_ENABLE_RUNTIMES flag. (#33610)
* changes to enable LLVM_ENABLE_RUNTIMES for libcxx and libcxxabi
* remove version update for 5.3.0 as it is done thru PR #33320 to enable
ci and reviews
2023-02-06 15:03:08 -08:00
Sreenivasa Murthy Kolam
358cc5ed1a
Update the ROCm packages for ROCm-5.4.0 release. (#35071)
* initial commit for rocm-5.4.0 release
* update the versions for more packages for 5.4.0 release
* update the gallium patch for mesa for libllvm-15 for ROCm-5.4.0 release
* update rocm-openmp-extras and rocwmma recipes for 5.4.0 release
* fix build error for rocfft for 5.4.0
* address review comments for rocfft for 5.4.0 change
* undo the removal of the older patch file
* bump up the version for hipfft for 5.4.0
* fix the failure after the merge with develop
* add recipes updates for 5.4.0 for migraphx.miopen-hip,miopen-opencl
* address the review comments on the mesa patch.update the rdc package for
5.4.0 release
* fix style errors
2023-02-06 15:00:10 -08:00
Adam J. Stewart
30b8cfad98
py-mypy: add v1.0.0 (#35362) 2023-02-06 16:59:04 -06:00