* Updating package file for osu-micro-benchmarks for the 6.2 release
* updating sha hash for 6.2 tarball
Co-authored-by: natshineman <shineman.5@osu.edu>
* Add netcdf-c 4.9.0 and netcdf-fortran 4.6.0
With v4.9.0 netcdf-c introduces zstandard compression option which is added as a variant.
* Fix when= in dependency
* Turn on variant zstd by default
Co-authored-by: kgerheiser <kgerheiser@icloud.com>
* alquimia, pflotran, plasma, py-mpi4py, strumpack - add in new versions
* Fix hip CI failure
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Instead of looping over multiple regexes and the entire text file
contents, create a giant regex with all literal prefixes and do a single
pass over files to detect prefixes. Not only is a single pass faster,
it's also likely that the regex is compiled better, given that most
prefixes share a common ... prefix.
In the dfs code, flip edges so that `parent` means `from` and
`spec` means `to` in the direction of traversal. This makes it slightly
easier to write generic/composable code. For example when using visitors
where one visitor reverses direction, and another only cares about
accepting particular edges or not depending on whether the target node
is seen before, it would be good if the second visitor didn't have to
know whether the order was changed or not.
Use the same compression level as `gzip` (6) instead of what Python uses
(9).
The LLVM tarball takes 4m instead of 12m to create, and is <1% larger.
That's not worth the wait...
* udunits: Update download URL
* udunits: Deprecate older versions
Unidata now only provides the latest version of each X.Y branch. Older 2.2 versions have been deprecated accordingly but are still available in the build cache.
Co-authored-by: RemiLacroix-IDRIS <RemiLacroix-IDRIS@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* Update wgrib2 from JCSDA/NOAA-EMC fork
* var/spack/repos/builtin/packages/wgrib2/package.py: fix typo in comment, add conflict for variants netcdf3, netcdf4
* wget hdf5/netcdf4 internal dependencies for wgrib2
* Black-format var/spack/repos/builtin/packages/wgrib2/package.py
* More format changes in var/spack/repos/builtin/packages/wgrib2/package.py
#32137 added an option to update() a BinaryCacheIndex with a
cooldown: repeated attempts within this cooldown would not
actually retry. However, the cooldown was not properly
tracked for failures (which is common when the mirror
does not store any binaries and therefore has no index.json).
This commit ensures that update(..., with_cooldown=True) will
also skip the update even if a failure has occurred within the
cooldown period.
Due to reuse concretization, we may generate DAGs with two occurrences
of the same package corresponding to distinct specs. This happens when
build dependencies are reused, since their dependencies are ignored in
concretization.
This caused a regression, for example: `spec['openssl']` would take the
'openssl' of the build dep `cmake`, instead of the direct `openssl`
dependency, simply because the edge to `cmake` was traversed first and
we do depth first traversal.
One solution that was discussed is to limit `spec[name]` to just direct
deps, or direct deps + transitive link deps, but this is too breaking.
Instead, this PR simply prioritizes transitive link and direct
build/run/test deps, and then falls back to a full DAG traversal. So,
it's just about order of iteration.
* Update py-sphinxcontrib-mermaid
* Add py-myst-parser
* Fix py-mdit-py-plugins and py-myst-parser dependencies
* Add py-exhale package
* Update var/spack/repos/builtin/packages/py-mdit-py-plugins/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-myst-parser/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-myst-parser/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-myst-parser/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update py-exhale and py-myst-parser dependencies
* Add @svenevs as py-exhale maintainer
* Update var/spack/repos/builtin/packages/py-mdit-py-plugins/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Scan the text files for relocatable prefixes *before* creating a tarball,
to reduce the amount of work to be done during install from binary
cache.
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
* py-drep: new package
* fixed file extension
* added darwin conflict
* py-checkm-genome and py-pysam: bumped version and updated deps (#10)
added checkm and pysam deps
* added dep documentation and fixed style
* changed checkm and pysam back to dev version for upstreaming
* added url and perl run dep
* fixed style
Instead of showing
```
==> Error: Timed out waiting for a write lock.
```
show
```
==> Error: Timed out waiting for a write lock after 1.200ms and 4 attempts on file: /some/file
```
s.t. we actually get to see where acquiring a lock failed even when not
running in debug mode.
And use pretty time units everywhere, so we don't get 1.45e-9 seconds
but 1.450ns etc.
* backtraces without --debug
Currently `--debug` is too verbose and not-`--debug` gives to little
context about where exceptions are coming from.
So, instead, it'd be nice to have `spack --backtrace` and
`SPACK_BACKTRACE=1` as methods to get something inbetween: no verbose
debug messages, but always a full backtrace.
This is useful for CI, where we don't want to drown in debug messages
when installing deps, but we do want to get details where something goes
wrong if it goes wrong.
* completion
