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Author SHA1 Message Date
Adam J. Stewart
b0cf2b5855 Add GEOS 3.7.2 (#11734) 2019-06-17 20:58:43 -04:00
Adam J. Stewart
de51be45b9 Add GDAL 3.0.0 (#11733) 
* Add GDAL 3.0.0

* Clarify PROJ version requirements
 2019-06-17 20:57:48 -04:00
Adam J. Stewart
17f20d0f32 Add py-fiona 1.8.6 (#11736) 
* Add py-fiona 1.8.6

* Remove commented code

* Python 3 will be required in the next release
 2019-06-17 20:54:58 -04:00
Adam J. Stewart
ee20b4826f Add libgeotiff 1.5.1 (#11731) 2019-06-17 20:46:46 -04:00
Manav Bhatia
0e34cc8a8e Libmesh updates (#11750) 
* Updates to libMesh: added v1.3.1 checksum, added vtk variant, bugfix for enabling petsc when slepc variant is specified

* fixed indentation issues identified by Travis CI

* - updates version number
- added master as a version
- added new variant options for perflog, metaphysicl and blocked storage
-- bug-fix for metis

* fixes for spack indentation errors

* renaming develop to master following review comment of PR.
 2019-06-17 19:38:19 -05:00
Adam J. Stewart
e23adbd4a9 Add py-pyproj 2.2.0 (#11735) 
* Add py-pyproj 2.2.0

* PR review requests

* Make Python requirements more explicit
 2019-06-17 20:23:40 -04:00
Adam J. Stewart
10d5008ef5 Restrict pism to proj@:4 (#11754) 
* Restrict pism to proj@:5

* PROJ.5 is not yet supported either :(
 2019-06-17 18:35:03 -04:00
Paul
93e1336de8 Added newer GoLang versions (#11756) 2019-06-17 17:23:09 -05:00
Adam J. Stewart
a558de117a Restrict ibmisc to proj@:4 (#11753) 
* Restrict ibmisc to proj@:5

* Restrict ibmisc to proj@:4
 2019-06-17 18:02:09 -04:00
Dan Lipsa
cdf4ba81e5 Remove version from py-mpi4py. (#11587) 2019-06-17 10:59:34 -04:00
Valentin Clement (バレンタイン クレメン)
f4d8b1ee60 Add version 1.2.2 and 1.2.3 to the package (#11748) 2019-06-17 16:03:26 +02:00
Dan Lipsa
83c7959580 Fix condition to enable mpi4py. (#11707) 
* Fix condition to enable mpi4py.

* flake8

* Catalyst as paraview for mpi4py.

* Catalyst needs numpy and mpi4py.

* Remove leftover enable python.
 2019-06-17 09:30:29 -04:00
Tamara Dahlgren
6e067a05c7 bugfix: use config fixture for stage tests (#11701) 
Some tests introduced in #11528 temporarily set the user's `config:build_stage`, which affected (or created) a config.yaml file in the user's `$HOME/.spack` directory that could leave entries behind if the tests fail.

This change ensures only temporary configuration files are used/affected by these tests.
 2019-06-17 11:38:34 +02:00
Tamara Dahlgren
a551e4329e docs: updates for stage.source_path (#11702) 2019-06-17 11:36:22 +02:00
Axel Huebl
b57ba6289c
openPMD-api: pybind11>=2.3.0 (#11744) 
Update the dependency on pybind11 to the latest version
(constexpr signature support for all C++11 compilers + fixes).
 2019-06-16 17:47:55 +02:00
Todd Gamblin
ce3a3507a4
cowsay: new package (#11743) 
- A program that generates ASCII pictures of a cow with a message.

- This is used by the ISC19 Singularity tutorial, so we should probably
  have it in Spack.
 2019-06-16 17:29:25 +02:00
Todd Gamblin
45c65a255a
docs: update tutorial page for ISC19 tutorial (#11742) 2019-06-16 12:35:12 +02:00
Adam J. Stewart
3192318f36 Add py-geopandas 0.5.0 (#11737) 2019-06-16 08:57:13 +02:00
Adam J. Stewart
4965e9be53 Add libtiff 4.0.10 (#11732) 2019-06-16 08:52:16 +02:00
Adam J. Stewart
830964c2fb Add nasm 2.14.02 (#11729) 2019-06-16 08:50:05 +02:00
Adam J. Stewart
e259932a1e Add openjpeg 2.3.1 (#11728) 2019-06-16 08:49:36 +02:00
Adam J. Stewart
76490dcdbc Add py-cligj 0.5.0 (#11727) 2019-06-16 08:48:42 +02:00
Adam J. Stewart
69a746e941 Add py-numpy 1.16.4 (#11726) 2019-06-16 08:47:38 +02:00
Adam J. Stewart
7bb44f4620 Add libjpeg-turbo 2.0.2 (#11725) 2019-06-16 08:47:14 +02:00
Adam J. Stewart
92ab46b9ed Update URL for older version of jackcess (#11724) 2019-06-16 08:46:13 +02:00
Adam J. Stewart
53a4ea43c8 Add HDF 4.2.14 (#11723) 2019-06-16 08:45:23 +02:00
Adam J. Stewart
ffb7e83e65 Add new package py-boto3 (#11722) 2019-06-16 08:44:41 +02:00
Adam J. Stewart
0de9d15a49 Add new package py-s3transfer (#11721) 2019-06-16 08:43:41 +02:00
Adam J. Stewart
9a400d13a9 Add new package py-botocore (#11720) 2019-06-16 08:43:06 +02:00
Adam J. Stewart
2a15ab42fe Add new package py-jmespath (#11719) 2019-06-16 08:42:35 +02:00
Adam J. Stewart
07a90b214b Add new package py-freezegun (#11718) 2019-06-16 08:41:27 +02:00
Adam J. Stewart
639cb17322 Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
Adam J. Stewart
954a36c499 Add py-aenum package (#11716) 2019-06-16 08:39:54 +02:00
Kevin Manalo
91ef079511 intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
Adam J. Stewart
3bad45fedf
Updates to poppler to get pdf2svg working (#11681) 2019-06-15 17:32:39 -05:00
Glenn Johnson
6592b4d46d Fix latest HPL for MKL use (#11712) 
The 2.3 version of HPL needs LDFLAGS set for use of MKL libraries.
 2019-06-15 15:46:59 -05:00
Michael Kuhn
f3671244e4 docs: fix config tutorial (#11715) 
This fixes a few typos, adds a hint to `spack config blame` and brings
the variant specification in line with other docs sections.
 2019-06-15 21:34:32 +02:00
Axel Huebl
bccfb622e5 pybind11: v2.3.0 (#11713) 
Add the latest 2.3.0 release and me as package maintainer.
 2019-06-15 10:30:04 -05:00
brietzke
ef55319a9c new package: mutationpp (#11705) 
* new package: mutationpp

* Update package.py

* flake8: correct package.py for flake8-python-style

* Update package.py

* modifications as requested by reviewer for #11705
 2019-06-15 10:29:36 -05:00
Gabriel Rockefeller
537fa81c5d r3d: add version 2019-04-24 (#11710) 2019-06-15 14:27:03 +02:00
Justin S
9d6f37dc15 montage: new package at 6.0 (#11696) 2019-06-14 16:40:50 -05:00
Matthias Diener
f3eab78b80 scons: add version 3.0.5 (#11709) 2019-06-14 16:39:58 -05:00
Satish Balay
030f0951d4
dtk@develop now requires 'submodules=True' flag (#11694) 2019-06-14 11:04:48 -05:00
Justin M Wozniak
8afae13369 swift-t: New release packages for 1.4.3 (#11684) 2019-06-14 09:49:51 -05:00
Tamara Dahlgren
1b8f641016
Ensure mock configuration directory is cleaned up on session exit. (#11700) 2019-06-13 16:41:00 -07:00
Jordan Ogas
e275ddc169 add charliecloud-0.9.10 (#11471) 
* add charliecloud-0.9.10; remove obsolete version

* revert older version changes; add version function

* fix space issue

* remove url declaration

* revert url removal

* remove self reference

* fix url; removed preferred tag; use newer package url
 2019-06-13 16:50:55 -05:00
Tamara Dahlgren
25b21c093a Add tests for "spack location" command (#11661) 
The "spack location" command was previously untested. This also adds
a check to ensure that composite Stages can report whether they were
expanded (this property was previously only recorded in Stage but not
in CompositeStage).
 2019-06-13 12:20:13 -07:00
Tamara Dahlgren
5cf62e69ce Always treat DIYStage as expanded (#11663) 
DIYStage, used to treat a user-managed directory as a staging area,
should always be considered expanded (i.e. the source has been
decompressed if it was stored in an archive).

This also:

* Adds checks to ensure that the path used to instantiate a
  DIYStage refers to an existing directory.
* Adds tests to check the behavior of DIYStage (including behavior
  added here, but it was generally untested before).
 2019-06-13 11:14:35 -07:00
Mark W. Krentel
aca1bfdb6a intel-xed and hpcviewer: adapt to new resource placement (#11676) 
Change 'destination' to 'placement' in the use of resource() for
intel-xed and hpcviewer.  Recent commits (1842873f and eb584d89)
changed the directory path for a resource and thus broke the build
for these packages.
 2019-06-13 09:53:30 +02:00
marvinbernhardt
4f2144a68e added jpeg,png,ffmpeg variants to lammps (#10404) 2019-06-12 21:02:20 -06:00