George Hartzell
ad2a22fa01
Add package for r-ada, update r-rpart version ( #4772 )
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* Add package for r-ada, update r-rpart version
Adds a package for r-ada.
Update the version for r-rpart because the previous version is
no longer at that URL. The previous version *is* in the Archive,
but list_url does not seem to be able to find it.
* Clean up FIXMEs (blush)
2017-07-15 18:08:36 +02:00
George Hartzell
8e6d7f117a
Add package for MuSE ( #4779 )
2017-07-15 18:06:43 +02:00
George Hartzell
8bd22c3294
Add package for Somatic Sniper ( #4778 )
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Lightly tested on CentOS 7.
2017-07-15 18:05:51 +02:00
homerdin
246c07f864
New Package: miniFE ( #4712 )
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* New Package: miniFE
* Removed extra property, using variant value directly
2017-07-14 15:55:51 -05:00
Kshitij Mehta
31503cb058
Savanna ( #4713 )
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* savanna: Runtime framework for online workflow management from the ECP CODAR project
* savanna: added version 0.5
* savanna: Copying the package contents to prefix as part of installation
* savanna: Doing submodules=true for git checkout of develop version
* savanna: removed dependency on adios@develop. depends on adios
* Savanna: Converted package to MakefilePackage
2017-07-14 15:54:57 -05:00
homerdin
f5f37845d6
New Package: Pathfinder ( #4714 )
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* New Package: Pathfinder
* Added index for String format
* Changed to make Makefile edit more specific
* Make Flake8 Happy
* Removed unneeded conversion
2017-07-14 15:54:31 -05:00
George Hartzell
88cb8b493b
Add package for freebayes ( #4718 )
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* Add package for freebayes
* Don't include url, must use git info.
* Fix flake8 complaints
2017-07-14 15:49:46 -05:00
George Hartzell
ea8c05b263
Add package for Sniffles ( #4719 )
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* Add package for Sniffles
* Wire up a manual install step
The cmake infra doesn't install anything, so do it by hand.
The binaries land in a location that embeds the version...
2017-07-14 15:49:02 -05:00
Audrey Thoma
1e205c09d8
hybpiper: new package ( #4720 )
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* hybpiper: new package and spades dependency
* hybpiper: making flkae8 happy
* hybpiper: fixing dependency errors
* fixing python dep type
* removing cmake from spade dependencies
2017-07-14 15:48:30 -05:00
homerdin
c78ee4a733
Package/cloverleaf ( #4759 )
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* New Package: CloverLeaf
* Removed Tag and Added Documentation
* Corrected Dependencies and Variant Values
2017-07-14 15:46:20 -05:00
pkondamudi
76d95b1798
New Package: Nekbone. ( #4748 )
2017-07-14 19:40:18 +02:00
pkondamudi
b3692d14fd
New Package: EBMS ( #4749 )
2017-07-14 19:37:52 +02:00
Axel Huebl
0d8b126d66
libwebsockets: new versions ( #4764 )
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* libwebsockets: new versions
both new versions fix a nasty bug leading to a hanging
connection on connect.
* ISAAC Server: Fix libwebsockets
ISAAC server did hang in docker containers due to a bug
in libwebsockets.
2017-07-14 10:28:15 -05:00
Denis Davydov
d929ea8102
slepc: fix download url ( #4763 )
2017-07-14 08:00:28 -05:00
pkondamudi
dfd56da358
New Package:XSBench ( #4751 )
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* New Package:XSBench
* minor changes
* replaced extend() with append()
* addressed comment.
* removed tags as per PR# 4749
2017-07-13 22:21:30 -05:00
Patrick Gartung
f63cdc7b61
Add two python packages for editing mach-O headers. ( #4725 )
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* Add two python packages for editing mach-O headers. Much faster than calling otool and install_name_tool directly
* remove non-overriding function
* autopep8
2017-07-13 22:07:22 -05:00
Audrey Thoma
3eedbd7c4e
py-deeptools: new package and dependencies ( #4717 )
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* py-deeptools: new package and dependencies
* py-deeptools: fixing python things
* missed a fix
2017-07-13 22:02:08 -05:00
Alen Kansakar
29fd896179
jags: Adding atlas as it depends on atlas
2017-07-13 09:48:30 -05:00
homerdin
34aea1328a
New Package: CloverLeaf3D ( #4705 )
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* New Package: CloverLeaf3D
* Fixed Flake8 Mistake
* Removed unnecessary check
2017-07-13 09:22:45 -05:00
Audrey Thoma
d68aa03868
graphmap: new package ( #4707 )
2017-07-13 09:21:37 -05:00
Jon Rood
47fe9e7aad
Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF directly, for Trilinos. ( #4687 )
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* Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF in Trilinos when necessary.
* Adding runtime error for PNetCDF variant in Trilinos when necessary. Omitting unnecessary openmp variant for Trilinos in Nalu.
* Changing variant checks to conflicts statements.
* Adding comments to Trilinos package.
2017-07-13 09:14:15 -05:00
Audrey Thoma
bde58a319b
idba: new package ( #4722 )
2017-07-13 08:35:22 -05:00
Audrey Thoma
c104fa233a
infernal: new package ( #4724 )
2017-07-13 08:32:55 -05:00
Audrey Thoma
4cbe1b338f
last: new package ( #4729 )
2017-07-13 08:26:17 -05:00
Audrey Thoma
e257ea59c2
maverick: new package ( #4731 )
2017-07-13 08:09:23 -05:00
George Hartzell
adcaa82b88
Add package for daligner ( #4734 )
2017-07-13 08:08:36 -05:00
Audrey Thoma
c7af89d8fc
mcl: new package ( #4732 )
2017-07-13 08:03:26 -05:00
Denis Davydov
92e6616a8a
dealii: workaround for concretization bug ( #4735 )
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* dealii: workaround for concretization bug
* trilinos: add Anasazi which got disabled recently
2017-07-13 07:51:45 -05:00
Audrey Thoma
1ecb389dcb
mitofates: new package and dependency libsvm ( #4741 )
2017-07-13 07:44:44 -05:00
Akhil Reddy Patlolla
5ac2020c98
Added ASPA Proxy App ( #4743 )
2017-07-13 07:30:01 -05:00
Alen Kansakar
6ce33d7773
Jags: Changing depends on to only include lapack
2017-07-12 14:52:54 -05:00
Alen Kansakar
d930c8d01a
Jags: Fixing problems found by flack8
2017-07-12 11:39:08 -05:00
kansakar
8873fc3a20
Jags: Adding jags defination
2017-07-12 11:39:07 -05:00
Christoph Junghans
a95f40f18e
hpx: added new package ( #4709 )
2017-07-12 07:54:27 +02:00
George Hartzell
ff906faf9a
Typo: submdoules -> submodules ( #4716 )
2017-07-12 07:48:31 +02:00
Audrey Thoma
3566966d47
genometools: new package ( #4706 )
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* genometools: new package
* genometools: fixing perl dependency type
2017-07-11 07:49:00 -05:00
Audrey Thoma
143d50ab67
fseq: new package ( #4702 )
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* fseq: new package
* fseq: fixed dependency type
2017-07-10 18:30:24 -05:00
homerdin
5bad9dfeac
New Package: MiniAMR ( #4701 )
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* New Package: MiniAMR
* Removed empty braces string formatting
2017-07-10 18:30:08 -05:00
homerdin
45e731d574
New Package: HPCCG ( #4693 )
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* New Package: HPCCG
* Moved Run Script Install Location
2017-07-10 12:31:41 -05:00
homerdin
c908ccecdc
New Package: MiniAero ( #4694 )
2017-07-10 12:31:23 -05:00
Audrey Thoma
02258056fd
exabayes: new pacakge ( #4695 )
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* exabayes: new pacakge
* exabayes: added configure arg
* exabayes: adding comments regarding compilers
2017-07-10 12:29:59 -05:00
Audrey Thoma
1f9d6927b7
csdp: new pacakge ( #4700 )
2017-07-10 12:28:51 -05:00
Audrey Thoma
c80bca00ff
ea-utils: new package ( #4690 )
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* ea-utils: new package
* ea-utils: simplifying self.spec.prefix
* ea-utils: added comment about perl
* ea-utils: fixing flake8 error
2017-07-10 12:26:03 -05:00
EmreAtes
1abf31d3fa
New package: CoMD ( #4697 )
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* New package: comd
* Avoid re-defining build
2017-07-09 09:05:11 -05:00
Mike DePaulo
72aa99cb24
GCC: Add strip variant to reduce installation size ( #4670 )
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* gcc: Add strip variant
* gcc: Fix strip variant description being too long
2017-07-07 22:17:52 -05:00
George Hartzell
efecefd4dd
Add a package for tophat ( #4698 )
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Lightly tested on CentOS 7.
2017-07-07 22:15:38 -05:00
Audrey Thoma
56b959501a
fastx-toolkit: solving gcc conflict ( #4696 )
2017-07-07 16:53:15 -05:00
Christoph Junghans
1886b0b370
New package: quinoa ( #4686 )
2017-07-07 11:11:53 +02:00
homerdin
60a8b68a7e
Added TeaLeaf Package ( #4683 )
2017-07-07 10:54:34 +02:00
Axel Huebl
46e3c2b274
Isaac Server 1.3.1: New version ( #4689 )
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adds a new release of isaac-server.
2017-07-07 10:51:09 +02:00