Commit graph

17529 commits

Author SHA1 Message Date
Sebastian Schmitt
aef1ff7ec5
Remove version in extends (#19366)
extends expects the package name only.

Cf. #12480.
2020-10-19 13:26:37 -05:00
Andrew W Elble
0df70e217f
A collection of tensorflow fixes and updates (#19371)
* A collection of tensorflow fixes and updates

* tensorflow 2.3.1 requires the workaround for external protobuf as well
* Update tensorflow-estimator to 2.3.0
* Update tensorboard to 2.3.0
* Update tensorboard-plugin-wit to use actual releases
* Patch that potentially fixes #16073

* add myself to maintainer list
2020-10-19 13:15:49 -05:00
G-Ragghianti
9cd2ab48ab
Slate package: resolves missing header issue (#19032)
* Changed make command to support new slate build variable 'blas='

* Updated to use package's "make install" target

* Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant.

* Fixed problem caused by systems which use a non-bash /bin/sh

* Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas).

* Fixed formating

* Changed to MakefilePackage and cleaned up make argument generation

* Implemented "edit" method

* Removed blank line

* Sqitched to using mpi compiler wrapper variables

* Update var/spack/repos/builtin/packages/slate/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 12:16:10 -05:00
darmac
761b79e34f
r-rgeos: fix build error (#19360) 2020-10-19 10:33:32 -05:00
Amjad Kotobi
432772dbb6
openssh: new version 8.4p1 (#19358) 2020-10-19 10:32:43 -05:00
Amjad Kotobi
cbd100819a
anaconda3: new versions (#19357) 2020-10-19 10:31:58 -05:00
darmac
68b05b43e0
Add new package: py-mido (#19355) 2020-10-19 10:22:08 -05:00
darmac
b4f254df5d
Add new package: py-cekit (#18813)
* Add new package: py-cekit

* refine dependencies
2020-10-19 10:21:08 -05:00
darmac
ced73019de
Add new package: tpm2-tss (#18824)
* Add new package: tpm2-tss

* remove patch(), there's no need to use it
2020-10-19 10:14:51 -05:00
darmac
78986c5575
Add new package: percona-server (#18818) 2020-10-19 10:13:55 -05:00
darmac
d48b186500
py-coapthon3: added new package at v1.0.1 (#18990)
* Add new package: py-coapthon3

* remove mistake version
2020-10-19 11:42:48 +02:00
darmac
3807ceec0b
premake-core: added new package at v5.0.0-alpha15 (#18807) 2020-10-19 10:39:40 +02:00
darmac
9799c553e8
wsmancli: added new package at v2.6.0 (#18906) 2020-10-19 10:30:41 +02:00
darmac
fb2aba6f0f
junit4: added new package at v4.13 (#18769)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 10:11:00 +02:00
Sergey Kosukhin
fd7bfb1a50
filter_compiler_wrappers: a fix for NAG (#17133) 2020-10-18 23:18:18 -05:00
elsagermann
4750d479a0
Add testing option to dev-build command (#17293)
* ADD: testing to dev-build command

* RM: mutally exclusive group for testing in parser

* FIX: test option to subparser and not testing

* ADD: spack-completion.bash

* RM: local devbuildcosmo cmd

* FIX: bad merge --drop-in -b --before options forgotten

* FIX: --test place in spack-completion.bash

* FIX: typo

* FIX: blank line removing

* FIX: trailing white space

Co-authored-by: Elsa Germann <egermann@tsa-ln002.cm.cluster>
2020-10-18 23:17:07 -05:00
ketsubouchi
05ffbbc0be
butterflypack: Support fj Fortran (#17514)
* butterflypack: Support fj Fortran

* butterflypack: split patch

* butteflypack: add ieee_support_nan
2020-10-18 23:16:19 -05:00
Massimiliano Culpo
008b77a2a7
nag: added external detection capabilities (#18153) 2020-10-18 23:12:05 -05:00
Wouter Deconinck
9471e9cb03
[docs] Pkg list: current version, not latest release (#18213)
The package list at https://spack.readthedocs.io/en/latest/package_list.html claims "it is automatically generated based on the packages in the latest Spack release" but it is actually based on the develop branch. This leads to confusion when users find that e.g. herwigpp is included in the list, but it cannot be found when they install the latest release. That latest release has a package list at https://spack.readthedocs.io/en/stable/package_list.html which does indeed not include herwigpp.

Changing the language from "the latest Spack release" to "this Spack version" might make that clearer. Maybe.
2020-10-18 23:11:20 -05:00
Robert Blake
1b558aaa81
mpich: Add external find support (#18330)
* Adding external support to mpich

* Removing debugging print statement.
2020-10-18 23:09:13 -05:00
Omar Padron
747151c3b7
remove package: libglvnd (#18363) 2020-10-18 23:08:03 -05:00
Miranda Mundt
29e2196340
Add new package: vvtest (#18701)
* Adding vvtest to spack

* Fixing flake8 failures

* Adding suggestions

* Removing unnecessary import

* Incorporating suggested changes
2020-10-18 23:06:18 -05:00
darmac
e88e6466e2
Add new package: soci (#18816) 2020-10-18 23:04:22 -05:00
arjun-raj-kuppala
761348a3af
AMD ROCm rccl - numa.h issue fix (#19317) 2020-10-18 23:01:25 -05:00
Chuck Atkins
7d546a0145
Dataviz sdk update dep variants (#19327)
* ecp-io-sdk: Add preferred variants to all dependencies

* ecp-viz-sdk: Add preferred variants to all dependencies
2020-10-18 22:59:34 -05:00
Massimiliano Culpo
104eee7a7e
Revert "ipopt: Add condition for 'aarch64' to Ipopt/config.guess (#13499)" (#19341)
This reverts commit e7f574aad5.
2020-10-18 22:59:18 -05:00
darmac
ea7273a93e
Add new package: e2fsprogs (#18763)
* Add new package: e2fsprogs

* refine setup_run_environment()
2020-10-18 22:58:34 -05:00
t-nojiri
d16a980640
vdt: Removed the -mfpu=neon option for aarch64. (#18134) 2020-10-18 22:57:46 -05:00
t-nojiri
18391eef58
coevp: use libquadmath only x86_64 and ppcle. (#18130) 2020-10-18 21:07:04 -05:00
t-nojiri
567caafc58
dmtcp: Fix for aarch64 (#19246) 2020-10-18 20:24:51 -05:00
Jason Miller
25f817b8ae
Fix for buildcache -o (#19354)
* Fix for buildcache -o

The method has more positional arguments than the caller expects.

* Address length issue.

Fix pylint/flake errors.
2020-10-18 19:40:28 -05:00
Adam J. Stewart
02575cb3bb
bash: add ssh flag (#18992)
* bash: add flag on macOS

* Add flag unconditionally
2020-10-18 17:40:32 -04:00
Adam J. Stewart
c3f8df7c52
py-scipy: added v1.5.3 (#19353) 2020-10-18 16:15:23 +02:00
Stephen Hudson
c8581989d5
Update libensemble to v0.7.1 (#19349)
* Update libensemble to v0.7.1

* Update var/spack/repos/builtin/packages/py-libensemble/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-17 19:00:54 -05:00
Nichols A. Romero
8619e5b5ab
Removing classic flang. (#19350) 2020-10-17 15:27:09 -05:00
Ryan Mast
1a63baef4d
helics: Add version 2.6.1 (#19348) 2020-10-17 15:23:40 -05:00
Omri Mor
bff0291dac
Spec: fix multiple generator iteration in satisfies_dependencies (#18527) (#18559) 2020-10-17 11:40:31 +02:00
Nichols A. Romero
1a6c5ff541
Add LLVM 11.0.0 (#19309)
* Add LLVM 11.0.0

* This longdouble patch was merged in.
2020-10-16 23:02:57 -05:00
manifest
89332361ba
gemini dep py-geneimpacts + (#19334) 2020-10-16 16:32:59 -05:00
iarspider
da71e9e88e
Fix tar detection (missing import: re) (#19338)
Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16 16:31:40 -05:00
iarspider
7296f8c628
Add external package support to xz (#19339)
* Add external package support to xz

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16 16:30:57 -05:00
iarspider
e9da8d1633
Add external package support to bzip2 (#19343)
* Add external package support to bzip2

* Flake-8

* Flake-8 part 2

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16 16:28:31 -05:00
Scott McMillan
a612be1c98
New compiler: nvhpc (NVIDIA HPC SDK) (#19294)
* Add nvhpc compiler definition: "spack compiler add" will now look
  for instances of the NVIDIA HPC SDK compiler executables
  (nvc, nvc++, nvfortran) in supplied paths
* Add the nvhpc package which installs the nvhpc compiler
* Add testing for nvhpc detection and C++-standard/pic flags

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2020-10-16 14:04:27 -07:00
iarspider
78f349c635
ghostscript: add external package detection (#19346)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16 20:13:39 +02:00
Pieter Ghysels
f0b1f93d12
Fix for MKL ScaLAPACK (#19336) 2020-10-16 11:08:38 -05:00
darmac
01cf1d79db
parquet-format: added new package at v2.8.0 (#18544)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16 17:54:42 +02:00
manifest
506d2795a8
py-inheritance: added new package at v0.1.5 (#19337) 2020-10-16 17:07:23 +02:00
iarspider
8c7385096e
spack external find: fix debug output (#19342)
Output was, e.g. `Executables in /bin and /,u,s,r,/,b,i,n are both associated with the same spec xz@5.2.2`, will be `Executables in /bin and /usr/bin are both associated with the same spec xz@5.2.2`.
2020-10-16 16:46:41 +02:00
iarspider
d34b612052
diffutils: added support for external detection (#19344) 2020-10-16 16:10:07 +02:00
t-nojiri
4b9701a195
opium : convert to be an autotools package (#18708) 2020-10-16 12:08:59 +02:00