Commit graph

14697 commits

Author SHA1 Message Date
Andrew W Elble
aed516ad56
TensorFlow: let install take care of the headers (#15718)
* TensorFlow: let install take care of the headers

we don't need to manually install them.

* no longer need to import glob
2020-03-27 21:35:13 -05:00
Sinan
829bfb5788
magma now extends CudaPackage class, taking care of the gcc conflicts (#14471)
* magma now extends CudaPackage class, taking care of the gcc conflicts

* enforce +cuda; thus cuda is dependency via CudaPackage class

* add conflict

* use cuda_arch to set GPU_TARGET build option

* get rid of unnecessary constraint

* flake8

* impose cuda version dependency found empirically

* add variant description

* add conflict

Co-authored-by: Sinan81 <Sinan81@github>
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-27 15:28:54 -05:00
Benjamin Fovet
d909c6d89d
Add new package CMinpack (#15606)
* Add new package CMinpack

* Add link to CMinpack PR#21
2020-03-27 14:29:49 -05:00
JeromeDuboisPro
2b915dc517
Adding mesa-glu 9.0.1 (2019) (#15705)
Adding mesa-glu 9.0.1 (2019)
2020-03-27 14:28:51 -05:00
iarspider
cd82228c78
py-multiprocess: add new version (0.70.9) and dependencies (#15710)
* py-multiprocess: add new version (0.70.9) and dependencies

* Add new version of py-dill

* Update package.py

* Update package.py
2020-03-27 12:57:29 -05:00
Daryl W. Grunau
f40080934e
New package lesstif (#15703)
* new package lesstif

* incorporate more of the Homebrew build recipe

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-27 12:57:04 -05:00
Adam J. Stewart
b6d2abf885
py-grpcio: add new version (#15713) 2020-03-27 11:43:16 -05:00
Sinan
b397af5d9c
Package/qscintilla: python bindings via extend path (#15599)
* build python bindings within qscintilla package via extend_path trick

* add todo

* reflect new setup also in py-pyqt4 package

* get rid of qscintilla dependency

* also tweak qgis for the new setup

* generalize the building of python bindings

* generalize building of pythong bindings to all qt versions

* add qsci_api variant

* add qsci_variant for pyqt4 package as well; add comment

* pyqt dependency should build with +qsci_api variant enabled

* fix bugs

* improve style

* reflect recent changes

* flake8

* improve style

* more flake8

* more flake8

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-27 11:42:58 -05:00
Nichols A. Romero
c5e74fef32
QMCPACK Update March 2020 - Part 2 (#15616)
* Add some comments explaining the choice of flag_handler.

* Fix QMCPACK install method.

* Add support for ppconvert. This requires a custom build method.

* Fix QMCPACK setup_run_environment. Nexus should be properly supported now.

* Cleaner way to check for intel-mkl in spec.

* Remove build method and use build_targets property instead.

* Additional fixed for install method. Effectively restoring the original install method.

* Add the missing backslash to fix directory names.

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Omit these conflicts on mkl variants for now, will hopefully be supportted with new concretizer in a couple of months.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 11:38:28 -05:00
darmac
d7454baa55
util-linux: add libmount variant (#15631) 2020-03-27 11:35:08 -05:00
darmac
c3e41444ff
Add new package: zfs (#15632) 2020-03-27 11:34:03 -05:00
Hector
fb5afb4cb4
add source-highlight variant to gdb (#15634) 2020-03-27 11:33:33 -05:00
noguchi-k
0ca5ad237a
denovogear: fixed comparison error (#15638) 2020-03-27 11:29:30 -05:00
iarspider
953bd04cb3
Bison: add version 3.3.2 (#15707) 2020-03-27 11:21:42 -05:00
iarspider
0f8148b258
py-attrs: add version 19.3.0 (#15709) 2020-03-27 11:16:40 -05:00
Dr. Christian Tacke
16f104aafe
intel-tbb: new download url, fix sha256 (#15675)
intel moved the repository around.
github changes the prefix inside the tar according to the
repository name.

So all sha256 have changed!

I verified that the tar contents for 2019.4 did not change
except for the prefix.
2020-03-27 10:59:05 -05:00
Amjad Kotobi
6e82761d4e
New package Anaconda2 (#15676) 2020-03-27 10:58:50 -05:00
Andrew W Elble
108a0c99f1
TensorFlow: Make horovod compilation work (#15692)
* TensorFlow: Clean up/simplify the installation, make sure the headers are
installed so that horovod can find them successfully. Fix the 2.0.* builds.

* Backport of 837c8b6b upstream
"Remove contrib cloud bigtable and storage ops/kernels."
Allows 2.0.* releases to build with '--config=nogcp'

* comment regarding tensorflow issue #31187

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-03-27 10:51:04 -05:00
Toyohisa Kameyama
7df7b65cec
ppOpen-AT: New package (#15649)
* ppOpen-AT: New package

* use install instead of install-after.

* use install_tree.

* forget remove mkdir.
2020-03-27 08:16:48 -05:00
Brian Homerding
420b5dd4b9
MpiP: adding variant to build shared libraries (#10410) 2020-03-27 12:07:57 +01:00
darmac
e1238bae90
dpdk: added new package at v20.02 (#15635) 2020-03-27 10:21:16 +01:00
darmac
6a33c269bd
sshpass: added new package (#15704) 2020-03-27 08:44:41 +01:00
iarspider
97c3addad3
cppgsl: added v2.1.0 (#15696)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 08:42:50 +01:00
Fabian Brandt
dcc4aabce1
New package libtlx (#15650)
* New package libtlx

* Replaced dash characters with ascii dash
2020-03-26 22:55:27 -05:00
Michael Kuhn
5f06e50902
meson: Add 0.53.2 and fix setuptools dependency (#15674)
py-setuptools is actually required for running meson.
2020-03-26 22:50:20 -05:00
Hector
0ebed5a618
fix gdb installation (#15679)
* fix gdb installation

* add reference url
2020-03-26 22:45:47 -05:00
Sinan
2828815a49
add new versions (#15688)
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-26 22:41:57 -05:00
noguchi-k
5cb4db8570
gtkorvo-dill: fix argument type of clear_cache (#15689) 2020-03-26 22:41:25 -05:00
Toyohisa Kameyama
8293660217
ppOpen-MATH/MP: New package. (#15690)
* ppOpen-MATH/MP: New package.

* Fix quote.
2020-03-26 22:40:22 -05:00
Seth R. Johnson
e989c05cd0
Add include-what-you-use (#15691) 2020-03-26 22:38:56 -05:00
iarspider
209c7e3ddd
xrootd: new version (4.11.2) (#15694) 2020-03-26 22:37:56 -05:00
iarspider
bbc76c3551
fmt: new version (6.1.2) (#15695) 2020-03-26 22:37:33 -05:00
iarspider
640df9c20b
range-v3: add new version (0.10.0) (#15697) 2020-03-26 22:36:24 -05:00
Roman Briskine
ef7837410e
Fix non-root installations; update homepage (#15701) 2020-03-26 22:32:19 -05:00
Jennifer Herting
7b4354b4c3
genometools: added v1.6.1 (#15657) 2020-03-26 15:01:24 +01:00
Andrew Gaspar
a0c8686105
catch2: added versions up to v2.11.3 (#15680) 2020-03-26 12:46:39 +01:00
Toyohisa Kameyama
9e51ba80c7
ppOpen-Math/VIS: added new package (#15665) 2020-03-26 08:37:25 +01:00
darmac
9f5873324e
kmod: added package at v27 (#15633) 2020-03-26 07:50:28 +01:00
gauthier12
851fb173c8
med package: add version 4.0.0 (#15652) 2020-03-25 19:10:31 -07:00
iarspider
a2801a8deb
OpenJDK: add version 8u222 (#15677) 2020-03-25 19:00:39 -07:00
Carson Woods
9f256ed953
darshan-util and darshan-runtime: add version 3.1.8 (#15681) 2020-03-25 19:00:15 -07:00
Dan Bonachea
e042bd9d89
UPC++ 2020.3.0 update (#15623)
## Summary

This PR updates and improves the Spack package for [UPC++](https://upcxx.lbl.gov).
I'm an LBL employee and developer on the UPC++ team, as well as the maintainer of this Spack package.

### Key Improvements:
* Adding new 2020.3.0 release and support for use of develop/master branches
    - Our build infrastructure underwent a major change in this release, switching from a hand-rolled Python2 script to a bash-based autoconf work-alike. 
    - The new build system is NOT using autotools (nor does it support some of the more esoteric autoconf options), but the user interface for common builds is similar.
* Add explicit support for an MPI optional dependency
    - New `mpi` variant enables use of the MPI-based spawner (most relevant on loosely coupled clusters), and the (unofficial) mpi-conduit backend
    - This variant is OFF by default, since UPC++ works fine without MPI on many systems, increasing the likelihood first-time Spack users get a working build without needing to correctly setup MPI
* Add support for post-install testing using the test support deployed in the new build infrastructure
* Fix or workaround a few bugs observed during testing 

### Status

The new package has been validated with a variety of specs across over seven different systems, including: NERSC cori, ALCF Theta, OLCF Summit, an in-house Linux cluster, and macOS laptops (Mojave and Catalina).
2020-03-25 16:05:13 -07:00
Axel Huebl
9c0b197460
WarpX: MPI, Backends, Ascent (#15647)
Expose serial/parallel build (MPI), CUDA/OpenMP backends, Clang, and
Ascent bindings.

Interestingly, `warpx +ascent` currently leads to an infinite loop in
the Spack concretizer.
2020-03-25 14:54:13 -07:00
Massimiliano Culpo
b42a96df98
provider index: removed import from + refactored a few parts (#15570)
Removed provider_index use of 'import from' and refactored a few routines to a further subclassing of _IndexBase for implementing user defined bindings of provider specs.
2020-03-25 09:48:05 -07:00
Axel Huebl
3aa225cd5c
openPMD-api: added v0.11.1 (#15659)
Add the latest release with HDF5-1.12 compatibility.
2020-03-25 11:57:00 +01:00
xfzhao
f1aec94719
mothur: specify version of vsearch (#15661) 2020-03-25 11:50:30 +01:00
Ben Morgan
2480217387
gitconddb: new package at v0.1.1 (#15651)
Git-based conditions database for HEP and other experiments.

Use latest release version and current master to support Linux and
macOS. Add core known dependencies and conflicts related to C++17
support.

cxxstd variant added to help transitive dependencies, and for future
support for newer standards in future.
2020-03-25 11:28:06 +01:00
Hadrien G
b8db87e1dc
ACTS: added v0.19 (#15671) 2020-03-25 10:49:53 +01:00
Sinan
24ca071652
pocl: add versions up to v1.4.0 (#15672)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-25 10:49:09 +01:00
Jeffrey Salmond
7e1e98cf8f
julia: added v1.4.0 (#15673) 2020-03-25 10:46:04 +01:00