hlrs-software-stack/spack

Author	SHA1	Message	Date
Greg Becker	033599c4cd	bugfix: env concretize after remove (#37877 )	2023-05-24 15:41:57 +02:00
Harmen Stoppels	8096ed4b22	spack remove: fix traversal when user specs intersect (#37882 ) drop unnecessary double loop over the matching user specs.	2023-05-24 09:23:46 -04:00
Simon Pintarelli	b49bfe25af	update nlcglib package (#37578 )	2023-05-24 11:17:15 +02:00
Houjun Tang	8b2f34d802	Add async vol v1.6 (#37875 )	2023-05-24 01:47:46 -04:00
H. Joe Lee	3daed0d6a7	hdf5-vol-daos: add a new package (#35653 ) * hdf5-vol-daos: add a new package * hdf5-vol-daos: address @soumagne review --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>	2023-05-23 23:42:42 -04:00
Glenn Johnson	d6c1f75e8d	julia: remove myself from maintainers list (#37868 )	2023-05-23 16:22:56 -05:00
Laura Weber	c80a4c1ddc	Updated hash for latest maintenance release (2022.2.1) (#37842 )	2023-05-23 14:08:55 -07:00
Glenn Johnson	466abcb62d	gate: remove myself as maintainer (#37862 )	2023-05-23 14:03:52 -07:00
Glenn Johnson	69e99f0c16	Remove myself as maintainer of R packages (#37859 ) * Remove myself as maintainer of R packages I will no longer have the time to properly maintain these packages. * fix flake8 test for import	2023-05-23 15:35:32 -05:00
Glenn Johnson	bbee6dfc58	bart: remove myself as maintainer (#37860 )	2023-05-23 16:08:07 -04:00
Glenn Johnson	2d60cf120b	heasoft: remove myself as maintainer (#37866 )	2023-05-23 14:37:57 -05:00
Glenn Johnson	db17fc2f33	opencv: remove myself from maintainers list (#37870 )	2023-05-23 14:34:52 -05:00
eugeneswalker	c62080d498	e4s ci: add dealii (#32484 )	2023-05-23 21:34:31 +02:00
Glenn Johnson	f9bbe549fa	gatetools: remove myself as maintainer (#37863 )	2023-05-23 15:32:54 -04:00
H. Joe Lee	55d7fec69c	daos: add a new package (#35649 )	2023-05-23 21:30:23 +02:00
Glenn Johnson	e938907150	reditools: remove myself as maintainer (#37871 )	2023-05-23 15:28:16 -04:00
Glenn Johnson	0c40b86e96	itk: remove myself as maintainer (#37867 )	2023-05-23 15:27:55 -04:00
Glenn Johnson	3d4cf0d8eb	mumax: remove myself as maintainer (#37869 )	2023-05-23 15:23:28 -04:00
Glenn Johnson	966e19d278	gurobi: remove myself as maintainer (#37865 )	2023-05-23 15:23:05 -04:00
Glenn Johnson	8f930462bd	fplo: remove myself as maintainer (#37861 )	2023-05-23 15:17:50 -04:00
kjrstory	bf4fccee15	New package: FDS (#37850 )	2023-05-23 11:59:05 -07:00
Manuela Kuhn	784771a008	py-bleach: add 6.0.0 (#37846 )	2023-05-23 11:50:53 -07:00
Glenn Johnson	e4a9d9ae5b	Bioc updates (#37297 ) * add version 1.48.0 to bioconductor package r-a4 * add version 1.48.0 to bioconductor package r-a4base * add version 1.48.0 to bioconductor package r-a4classif * add version 1.48.0 to bioconductor package r-a4core * add version 1.48.0 to bioconductor package r-a4preproc * add version 1.48.0 to bioconductor package r-a4reporting * add version 1.54.0 to bioconductor package r-absseq * add version 1.30.0 to bioconductor package r-acde * add version 1.78.0 to bioconductor package r-acgh * add version 2.56.0 to bioconductor package r-acme * add version 1.70.0 to bioconductor package r-adsplit * add version 1.72.0 to bioconductor package r-affxparser * add version 1.78.0 to bioconductor package r-affy * add version 1.76.0 to bioconductor package r-affycomp * add version 1.58.0 to bioconductor package r-affycontam * add version 1.72.0 to bioconductor package r-affycoretools * add version 1.48.0 to bioconductor package r-affydata * add version 1.52.0 to bioconductor package r-affyilm * add version 1.70.0 to bioconductor package r-affyio * add version 1.76.0 to bioconductor package r-affyplm * add version 1.46.0 to bioconductor package r-affyrnadegradation * add version 1.48.0 to bioconductor package r-agdex * add version 3.32.0 to bioconductor package r-agilp * add version 2.50.0 to bioconductor package r-agimicrorna * add version 1.32.0 to bioconductor package r-aims * add version 1.32.0 to bioconductor package r-aldex2 * add version 1.38.0 to bioconductor package r-allelicimbalance * add version 1.26.0 to bioconductor package r-alpine * add version 2.62.0 to bioconductor package r-altcdfenvs * add version 2.24.0 to bioconductor package r-anaquin * add version 1.28.0 to bioconductor package r-aneufinder * add version 1.28.0 to bioconductor package r-aneufinderdata * add version 1.72.0 to bioconductor package r-annaffy * add version 1.78.0 to bioconductor package r-annotate * add version 1.62.0 to bioconductor package r-annotationdbi * add version 1.24.0 to bioconductor package r-annotationfilter * add version 1.42.0 to bioconductor package r-annotationforge * add version 3.8.0 to bioconductor package r-annotationhub * add version 3.30.0 to bioconductor package r-aroma-light * add version 1.32.0 to bioconductor package r-bamsignals * add version 2.16.0 to bioconductor package r-beachmat * add version 2.60.0 to bioconductor package r-biobase * add version 2.8.0 to bioconductor package r-biocfilecache * add version 0.46.0 to bioconductor package r-biocgeneric * add version 1.10.0 to bioconductor package r-biocio * add version 1.18.0 to bioconductor package r-biocneighbors * add version 1.34.0 to bioconductor package r-biocparallel * add version 1.16.0 to bioconductor package r-biocsingular * add version 2.28.0 to bioconductor package r-biocstyle * add version 3.17.1 to bioconductor package r-biocversion * add version 2.56.0 to bioconductor package r-biomart * add version 1.28.0 to bioconductor package r-biomformat * add version 2.68.0 to bioconductor package r-biostrings * add version 1.48.0 to bioconductor package r-biovizbase * add version 1.10.0 to bioconductor package r-bluster * add version 1.68.0 to bioconductor package r-bsgenome * add version 1.36.0 to bioconductor package r-bsseq * add version 1.42.0 to bioconductor package r-bumphunter * add version 2.66.0 to bioconductor package r-category * add version 2.30.0 to bioconductor package r-champ * add version 2.32.0 to bioconductor package r-champdata * add version 1.50.0 to bioconductor package r-chipseq * add version 4.8.0 to bioconductor package r-clusterprofiler * add version 1.36.0 to bioconductor package r-cner * add version 1.32.0 to bioconductor package r-codex * add version 2.16.0 to bioconductor package r-complexheatmap * add version 1.74.0 to bioconductor package r-ctc * add version 2.28.0 to bioconductor package r-decipher * add version 0.26.0 to bioconductor package r-delayedarray * add version 1.22.0 to bioconductor package r-delayedmatrixstats * add version 1.40.0 to bioconductor package r-deseq2 * add version 1.46.0 to bioconductor package r-dexseq * add version 1.42.0 to bioconductor package r-dirichletmultinomial * add version 2.14.0 to bioconductor package r-dmrcate * add version 1.74.0 to bioconductor package r-dnacopy * add version 3.26.0 to bioconductor package r-dose * add version 2.48.0 to bioconductor package r-dss * add version 3.42.0 to bioconductor package r-edger * add version 1.20.0 to bioconductor package r-enrichplot * add version 2.24.0 to bioconductor package r-ensembldb * add version 1.46.0 to bioconductor package r-exomecopy * add version 2.8.0 to bioconductor package r-experimenthub * add version 1.26.0 to bioconductor package r-fgsea * add version 2.72.0 to bioconductor package r-gcrma * add version 1.36.0 to bioconductor package r-gdsfmt * add version 1.82.0 to bioconductor package r-genefilter * add version 1.36.0 to bioconductor package r-genelendatabase * add version 1.72.0 to bioconductor package r-genemeta * add version 1.78.0 to bioconductor package r-geneplotter * add version 1.22.0 to bioconductor package r-genie3 * add version 1.36.0 to bioconductor package r-genomeinfodb * update r-genomeinfodbdata * add version 1.36.0 to bioconductor package r-genomicalignments * add version 1.52.0 to bioconductor package r-genomicfeatures * add version 1.52.0 to bioconductor package r-genomicranges * add version 2.68.0 to bioconductor package r-geoquery * add version 1.48.0 to bioconductor package r-ggbio * add version 3.8.0 to bioconductor package r-ggtree * add version 2.10.0 to bioconductor package r-glimma * add version 1.12.0 to bioconductor package r-glmgampoi * add version 5.54.0 to bioconductor package r-globaltest * update r-go-db * add version 1.20.0 to bioconductor package r-gofuncr * add version 2.26.0 to bioconductor package r-gosemsim * add version 1.52.0 to bioconductor package r-goseq * add version 2.66.0 to bioconductor package r-gostats * add version 1.78.0 to bioconductor package r-graph * add version 1.62.0 to bioconductor package r-gseabase * add version 1.32.0 to bioconductor package r-gtrellis * add version 1.44.0 to bioconductor package r-gviz * add version 1.28.0 to bioconductor package r-hdf5array * add version 1.72.0 to bioconductor package r-hypergraph * add version 1.36.0 to bioconductor package r-illumina450probevariants-db * add version 0.42.0 to bioconductor package r-illuminaio * add version 1.74.0 to bioconductor package r-impute * add version 1.38.0 to bioconductor package r-interactivedisplaybase * add version 2.34.0 to bioconductor package r-iranges * add version 1.60.0 to bioconductor package r-kegggraph * add version 1.40.0 to bioconductor package r-keggrest * add version 3.56.0 to bioconductor package r-limma * add version 2.52.0 to bioconductor package r-lumi * add version 1.76.0 to bioconductor package r-makecdfenv * add version 1.78.0 to bioconductor package r-marray * add version 1.12.0 to bioconductor package r-matrixgenerics * add version 1.8.0 to bioconductor package r-metapod * add version 2.46.0 to bioconductor package r-methylumi * add version 1.46.0 to bioconductor package r-minfi * add version 1.34.0 to bioconductor package r-missmethyl * add version 1.80.0 to bioconductor package r-mlinterfaces * add version 1.12.0 to bioconductor package r-mscoreutils * add version 2.26.0 to bioconductor package r-msnbase * add version 2.56.0 to bioconductor package r-multtest * add version 1.38.0 to bioconductor package r-mzid * add version 2.34.0 to bioconductor package r-mzr * add version 1.62.0 to bioconductor package r-oligoclasses * update r-org-hs-eg-db * add version 1.42.0 to bioconductor package r-organismdbi * add version 1.40.0 to bioconductor package r-pathview * add version 1.92.0 to bioconductor package r-pcamethods * update r-pfam-db * add version 1.44.0 to bioconductor package r-phyloseq * add version 1.62.0 to bioconductor package r-preprocesscore * add version 1.32.0 to bioconductor package r-protgenerics * add version 1.34.0 to bioconductor package r-quantro * add version 2.32.0 to bioconductor package r-qvalue * add version 1.76.0 to bioconductor package r-rbgl * add version 2.40.0 to bioconductor package r-reportingtools * add version 2.44.0 to bioconductor package r-rgraphviz * add version 2.44.0 to bioconductor package r-rhdf5 * add version 1.12.0 to bioconductor package r-rhdf5filters * add version 1.22.0 to bioconductor package r-rhdf5lib * add version 1.76.0 to bioconductor package r-roc * add version 1.28.0 to bioconductor package r-rots * add version 2.16.0 to bioconductor package r-rsamtools * add version 1.60.0 to bioconductor package r-rtracklayer * add version 0.38.0 to bioconductor package r-s4vectors * add version 1.8.0 to bioconductor package r-scaledmatrix * add version 1.28.0 to bioconductor package r-scater * add version 1.14.0 to bioconductor package r-scdblfinder * add version 1.28.0 to bioconductor package r-scran * add version 1.10.0 to bioconductor package r-scuttle * add version 1.66.0 to bioconductor package r-seqlogo * add version 1.58.0 to bioconductor package r-shortread * add version 1.74.0 to bioconductor package r-siggenes * add version 1.22.0 to bioconductor package r-singlecellexperiment * add version 1.34.0 to bioconductor package r-snprelate * add version 1.50.0 to bioconductor package r-snpstats * add version 2.36.0 to bioconductor package r-somaticsignatures * add version 1.12.0 to bioconductor package r-sparsematrixstats * add version 1.40.0 to bioconductor package r-spem * add version 1.38.0 to bioconductor package r-sseq * add version 1.30.0 to bioconductor package r-summarizedexperiment * add version 3.48.0 to bioconductor package r-sva * add version 1.38.0 to bioconductor package r-tfbstools * add version 1.22.0 to bioconductor package r-tmixclust * add version 2.52.0 to bioconductor package r-topgo * add version 1.24.0 to bioconductor package r-treeio * add version 1.28.0 to bioconductor package r-tximport * add version 1.28.0 to bioconductor package r-tximportdata * add version 1.46.0 to bioconductor package r-variantannotation * add version 3.68.0 to bioconductor package r-vsn * add version 2.6.0 to bioconductor package r-watermelon * add version 2.46.0 to bioconductor package r-xde * add version 1.58.0 to bioconductor package r-xmapbridge * add version 0.40.0 to bioconductor package r-xvector * add version 1.26.0 to bioconductor package r-yapsa * add version 1.26.0 to bioconductor package r-yarn * add version 1.46.0 to bioconductor package r-zlibbioc * Revert "add version 1.82.0 to bioconductor package r-genefilter" This reverts commit 1702071c6d3ab83b75e0fcf493622113957223bb. * Revert "add version 0.38.0 to bioconductor package r-s4vectors" This reverts commit 58a7df23872ac8035fdac75c93cedf6dd7819dd0. * add version 0.38.0 to bioconductor package r-s4vectors * Revert "add version 1.28.0 to bioconductor package r-aneufinder" This reverts commit 0a1f59de6c17fe6aa62bcf807826f9d2023280e6. * add version 1.28.0 to bioconductor package r-aneufinder * Revert "add version 2.16.0 to bioconductor package r-beachmat" This reverts commit cd49fb8e4c84763a063f1b2d0b3bdc0179161568. * add version 2.16.0 to bioconductor package r-beachmat * Revert "add version 4.8.0 to bioconductor package r-clusterprofiler" This reverts commit 6e9a951cbe08042ca5100f47b8b1680cae26cc14. * add version 4.8.0 to bioconductor package r-clusterprofiler * Fix syntax error * r-genefilter: add version 1.82.0 * new package: r-basilisk-utils * new package: r-basilisk * new package: r-densvis * new package: r-dir-expiry * r-affyplm: add zlib dependency * r-cner: add zlib dependency * r-mzr: add zlib dependency * r-rhdf5filters: add zstd dependency * r-shortread: add zlib dependency * r-snpstats: add zlib dependency --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>	2023-05-23 11:40:00 -07:00
snehring	a6886983dc	usalign: new package (#37646 ) * usalign: adding new package * usalign: updating shasum, adding note about distribution	2023-05-23 11:30:40 -07:00
Andrey Parfenov	93a34a9635	hpcg: apply patch with openmp pragma changes for intel and oneapi compilers (#37856 ) Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>	2023-05-23 11:52:45 -04:00
Todd Gamblin	91a54029f9	libgcrypt: patch 1.10.2 on macos (#37844 ) macOS doesn't have `getrandom`, and 1.10.2 fails to compile because of this. There's an upstream fix at https://dev.gnupg.org/T6442 that will be in the next `libgcrypt` release, but the patch is available now.	2023-05-23 06:03:13 -04:00
Juan Miguel Carceller	5400b49ed6	dd4hep: add LD_LIBRARY_PATH for plugins for Gaudi (#37824 ) Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>	2023-05-23 10:28:26 +01:00
Juan Miguel Carceller	c17fc3c0c1	gaudi: add gaudi to LD_LIBRARY_PATH (#37821 ) Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>	2023-05-23 10:27:55 +01:00
Juan Miguel Carceller	6f248836ea	dd4hep: restrict podio versions (#37699 ) Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>	2023-05-23 10:20:31 +01:00
snehring	693c1821b0	py-pastml: adding version for compatibility with py-topiary-asr (#37828 )	2023-05-22 14:44:00 -05:00
Manuela Kuhn	62afe3bd5a	py-asttokens: add 2.2.1 (#37816 )	2023-05-22 14:40:08 -05:00
genric	53a756d045	py-dask: add v2023.4.1 (#37550 ) * py-dask: add v2023.4.1 * address review comments	2023-05-22 14:29:23 -05:00
Adam J. Stewart	321b687ae6	py-huggingface-hub: add v0.14.1, cli variant (#37815 )	2023-05-22 11:19:41 -07:00
Adam J. Stewart	c8617f0574	py-fiona: add v1.9.4 (#37780 )	2023-05-22 13:17:13 -05:00
Adam J. Stewart	7843e2ead0	azcopy: add new package (#37693 )	2023-05-22 11:09:06 -07:00
Juan Miguel Carceller	dca3d071d7	gaudi: fix issue with fmt::format (#37810 ) Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>	2023-05-22 10:33:05 -07:00
eugeneswalker	436f077482	tau %oneapi: -Wno-error=implicit-function-declaration (#37829 )	2023-05-22 13:13:02 -04:00
simonleary-umass-edu	ab3f705019	deleted package.py better error message (#37814 ) adds the namespace to the exception object's string representation	2023-05-22 09:59:07 -07:00
Tamara Dahlgren	d739989ec8	swig: convert to new stand-alone test process (#37786 )	2023-05-22 09:39:30 -07:00
Jordan Galby	52ee1967d6	llvm: Fix hwloc@1 and hwloc@:2.3 compatibility (#35387 )	2023-05-22 10:28:57 -05:00
Andrey Prokopenko	1af7284b5d	arborx: new version 1.4 (#37809 )	2023-05-21 12:25:53 -07:00
Todd Gamblin	e1bcefd805	Update `CHANGELOG.md` for v0.20.0	2023-05-21 01:48:34 +02:00
Manuela Kuhn	2159b0183d	py-argcomplete: add 3.0.8 (#37797 ) * py-argcomplete: add 3.0.8 * Update var/spack/repos/builtin/packages/py-argcomplete/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [@spackbot] updating style on behalf of manuelakuhn --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>	2023-05-20 11:31:28 -05:00
kwryankrattiger	078fd225a9	Mochi-Margo: Add patch for pthreads detection (#36109 )	2023-05-20 07:43:27 -07:00
Manuela Kuhn	83974828c7	libtiff: disable use of sphinx (#37803 )	2023-05-19 21:37:19 -05:00
Manuela Kuhn	2412f74557	py-anyio: add 3.6.2 (#37796 )	2023-05-19 21:36:39 -05:00
Manuela Kuhn	db06d3621d	py-alabaster: add 0.7.13 (#37798 )	2023-05-19 21:34:00 -05:00
Jose E. Roman	c25170d2f9	New patch release SLEPc 3.19.1 (#37675 ) * New patch release SLEPc 3.19.1 * py-slepc4py: add explicit dependency on py-numpy	2023-05-19 21:33:21 -05:00
Vanessasaurus	b3dfe13670	Automated deployment to update package flux-security 2023-05-16 (#37696 ) Co-authored-by: github-actions <github-actions@users.noreply.github.com>	2023-05-19 12:07:57 -07:00
Harmen Stoppels	6358e84b48	fix binutils dep of spack itself (#37738 )	2023-05-19 12:02:36 -07:00

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33767 commits