Commit graph

33767 commits

Author SHA1 Message Date
dependabot[bot]
ae38987cb4
build(deps): bump pygments from 2.16.1 to 2.17.1 in /lib/spack/docs (#41191)
Bumps [pygments](https://github.com/pygments/pygments) from 2.16.1 to 2.17.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.16.1...2.17.1)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-21 01:12:50 -07:00
Massimiliano Culpo
b361ffbe22
spack style: fix isort on sl:7 (#41133)
Bump the minimum version required for isort. This should fix
an issue reported on Scientific Linux 7, and due to:

https://github.com/PyCQA/isort/issues/1363
2023-11-21 06:24:37 +01:00
Mark W. Krentel
964440a08b
elfutils: add version 0.190 (#41187) 2023-11-20 21:10:21 -07:00
Wouter Deconinck
aeb1bec8f3
qt-base: have QtBase provide qmake, ont QtPackage (#41186) 2023-11-20 20:05:11 -07:00
Mark Abraham
cf163eecc5
gromacs: fix newly added variant (#41178)
In practice, one can only compiler for the Intel Data Center Max GPU
via a SYCL build and the oneAPI compiler. This is unlikely to change,
so we can be explicit about that.
2023-11-20 19:49:34 -07:00
Harmen Stoppels
7ec62d117e
py-grpcio* do not assume lib / header dir (#41182) 2023-11-20 15:34:29 -06:00
John W. Parent
5154d69629
MSVC preview version breaks clingo build (#41185)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-20 21:55:07 +01:00
Alec Scott
d272c49fb6
rust: add v1.73.0 and add support for external openssl certs (#41161)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-20 21:35:26 +01:00
Alec Scott
868a3c43e4
llvm: Remove python bindings when >= v17 (#41160)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-20 14:10:13 +01:00
Marc Perache
73858df14d
Catch2: add variant to choose cxx standard (#40996) 2023-11-20 11:31:17 +01:00
Sergio Sánchez Ramírez
8003f18709
openblas: optimize flags for A64FX (#41093) 2023-11-20 11:20:11 +01:00
Adam J. Stewart
87a9b428e5
py-scipy: add v1.11.4 (#41158) 2023-11-20 11:10:28 +01:00
Scott Wittenburg
714a362f94
mpich: support ch3:sock for a non busy-polling option (#40964) 2023-11-20 11:00:39 +01:00
Alec Scott
4636d6ec62
restic: add v0.16.2 (#41168) 2023-11-20 10:46:59 +01:00
Alec Scott
a015078c36
bfs: add v3.0.4 (#41165) 2023-11-20 10:00:31 +01:00
Alec Scott
ec2a0c8847
rclone: add v1.64.2 (#41166) 2023-11-20 10:00:15 +01:00
Alec Scott
cfae42a514
glab: add v1.35.0 (#41167) 2023-11-20 09:59:55 +01:00
iarspider
2c74ac5b2b
Remove a maintainer from CMS packages (#41170) 2023-11-20 01:27:38 -07:00
Wouter Deconinck
df1111c24a
sherpa: only enable_or_disable in v3: (#41162) 2023-11-20 09:20:21 +01:00
Harmen Stoppels
55d2ee9160
docs: document how spack picks a version / variant (#41070) 2023-11-20 09:00:53 +01:00
Alec Scott
edda2ef419
npm: only depend on libvips when @6, remove deprecated versions (#41159)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-19 10:13:51 -07:00
Ethan Williams
6159168079
elbencho: add new version and git master branch (#41136)
* elbencho add new version and git master branch

* Update var/spack/repos/builtin/packages/elbencho/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* formatting fix requested by @alecbcs

* remove whitespace added in blank line by github auto resolve

---------

Co-authored-by: Ethan W <mail@ethanwilliams.xyz>
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-19 08:24:06 -07:00
eugeneswalker
2870b6002c
e4s oneapi stack: turn on +sycl: ginkgo, heffte, petsc, upcxx, warpx (#41157)
* e4s oneapi stack: turn on +sycl: ginkgo, heffte, petsc, upcxx, warpx

* comment out warpx; build fails; add note
2023-11-18 22:21:20 -08:00
Christoph Junghans
73a715ad75
votca: add v2023 (#41100) 2023-11-18 16:51:46 -07:00
Mark Abraham
6ca49549d9
gromacs: Add new variants and clarify existing ones (#41115)
* gromacs: Add new variants and clarify existing ones

Add new variants that reflect existing capabilities and defaults in
the upstream build system. Add other existing constraints that were
not yet specified.

* conform to style

* Fix missing hyphens

* Correct cmake variable names
2023-11-18 16:48:00 -07:00
Wouter Deconinck
50051b5619
geant4: new version 11.1.3 (#41112)
* geant4: new version 11.1.3

Release notes: https://geant4.web.cern.ch/download/release-notes/notes-v11.1.3.txt

* geant4: cmake patch with expat fix only until 11.1.2.
2023-11-18 15:39:28 -07:00
dependabot[bot]
3907838e1d
build(deps): bump docker/build-push-action from 5.0.0 to 5.1.0 (#41149)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.0.0 to 5.1.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](0565240e2d...4a13e500e5)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-18 15:30:12 -07:00
Mark Abraham
f12b877e51
heffte: add sycl variant (#41132)
* heffte: add sycl variant

This targets the oneAPI SYCL compiler with oneMKL as FFT
implementation library.

* Require oneAPI compiler for sycl variant
2023-11-18 09:21:50 -07:00
Massimiliano Culpo
a701b24ad3
libksba: add v1.6.5 (#41129) 2023-11-18 09:18:19 -07:00
Adam J. Stewart
c60a806f0e
py-matplotlib: add v3.7.4, v3.8.2 (#41156) 2023-11-18 09:16:51 -07:00
Vanessasaurus
df7747eb9a
Automated deployment to update package flux-sched 2023-11-18 (#41153)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18 09:13:49 -07:00
Vanessasaurus
81130274f4
Automated deployment to update package flux-core 2023-11-18 (#41154)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18 09:13:06 -07:00
Vanessasaurus
2428c10703
Automated deployment to update package flux-security 2023-11-18 (#41152)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18 09:11:36 -07:00
Wouter Deconinck
d171f314c7
py-pygithub: new versions, dependencies (#41072)
* py-pygithub: new versions, dependencies

* py-pygithub: reordered dependencies per requirements.txt

* py-pygithub: depends on py-setuptools-scm
2023-11-18 08:57:46 -07:00
Wouter Deconinck
16f4c53cd4
py-bokeh: new version 3.3.1, and supporting packages (#41089)
* py-bokeh: new version 3.3.1

* py-xyzservices: new package

* py-bokeh, py-xyzservices: update homepages

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-bokeh: depends on newer py-numpy

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 08:47:45 -07:00
Moritz Kern
e8f09713be
Update py-elephant (#39200)
* add elephant version v0.12.0 and 0.13.0

* update copyright

* reformat according to black format errors

* restore maintainers directive

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add dependency python 3.8+

* sorted dependencies

* sort dependencies from newest to oldest

* add deps for @master

* removed dependency for master, since it is included in 0.12.0:

* removed dependency for python 3.7+ , since 3.7+ is the lowest supported version anyway

* removed specific deps for master, since master is always newer than all stable releases

* updated numpy dependency for Elephant 0.12.0:

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* removed upper bounds for py-quantities, omitting v0.14.0

* add elephant v0.14.0

* update required quantities version

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 07:42:57 -07:00
Lydéric Debusschère
063c28e559
py-cleo: add versions 2.0.0 2.0.1; add maintainers (#40611)
* py-cleo: add versions 2.0.0 2.0.1; add maintainers

* py-cleo: add forgotten dependence

* py-cleo: update from review: remove preferred version, remove a dependence, fix py-rapidfuzz version

* py-cleo: deprecated version 1.0.0a5; add version 1.0.0; update dependences

* py-cleo: add version 2.1.0; update version range of dependences

* py-crashtest: add version 0.4.1, dependence of py-cleo

* py-cleo: update dependence

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cleo: update dependence py-clikit

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cleo: update dependence py-rapidfuzz

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-rapidfuzz: add version 2.2.0 dependence of py-cleo@2

* py-cleo: fix version range of py-crashtest

* py-rapidfuzz: fix dependences; add py-rapidfuzz-capi and py-jarowinkler

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 08:28:56 -06:00
Hariharan Devarajan
31ec1be85f
Release DLIO Profiler Py 0.0.2 (#41127) 2023-11-18 07:58:56 -06:00
Erik Heeren
7137c43407
py-jsonpath-ng: version bump (#41078)
* py-jsonpath-ng: version bump

* py-jsonpath-ng: fix typo in version number
2023-11-18 07:54:50 -06:00
Erik Heeren
f474c87814
py-gitpython: version bump (#41079) 2023-11-18 07:53:55 -06:00
Juan Miguel Carceller
edf872c94b
py-pyh5py: reorder dependencies from newest version to oldest (#41137)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-11-18 07:48:34 -06:00
Michael Kuhn
223e5b8ca2
Fix invalid escape sequences (#41130)
Using Python 3.12 in a freshly cloned Spack repository results in
warnings such as this:
```
==> Warning: invalid escape sequence '\$'
==> Warning: invalid escape sequence '\('
==> Warning: invalid escape sequence '\.'
==> Warning: invalid escape sequence '\.'
```
These will turn into errors in 3.13, so fix them. All of them actually
do not need to be regexes, so convert them into normal strings.
2023-11-18 07:43:35 -06:00
Moritz Kern
cb764ce41c
Update py-quantities (#39201)
* add version 0.14.1

* formatting

* style checks

* fix style errors

* remove old versions

* fix typo

* style

* update maintainers directive

* sort dependencies from newest to oldest

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* sort dependencies from newest to oldest

* removed upper bounds for python version

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove dependency on Python 3.7 +, since 3.7 is the lowest supported version anyway

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 07:12:58 -06:00
Brian Van Essen
9383953f76
Hydrogen package: avoid newer openblas on power (#41143) 2023-11-17 14:20:33 -08:00
Stephen Herbener
9ad134c594
Add cxxstd variant to ecflow, update with latest ecflow version (#41120)
* Added recent versions to ecflow/package.py, as well as added a cxxstd variant that is
needed to set BOOST_NO_CXX98_FUNCTION_BASE appropriately when building with C++17 standard.
* Fixed pep8 style error in the ecflow package.py script.
* Remov
* Removed cxxstd variant since the ecflow cmake configuration was already specifying
to use the c++17 standard for newer versions. The use of the BOOST_NO_CXX98_FUNCTION_BASE
define is now triggered by the ecflow version.
2023-11-17 13:34:17 -08:00
Mark Abraham
ec8bd38c4e
Permit packages that depend on Intel oneAPI packages to access sdk (#41117)
* Permit packages that depend on Intel oneAPI packages to access sdk

* Implement and use IntelOneapiLibraryPackageWithSdk

* Restore libs property to IntelOneapiLibraryPackage

* Conform to style

* Provide new class to infrastructure

* Treat sdk/include as the main include
2023-11-17 14:59:04 +00:00
Wouter Deconinck
81e73b4dd4
root: new version 6.30.00 (#41118)
* root: new version 6.30.00

There is a new release of ROOT, v6.30.00, with release notes at https://root.cern/doc/v630/release-notes.html.

In addition to some deprecations of build options, this updates the C++ standard to 17 or higher (well, 20), and increases the vc minimum version.

* vc: new version 1.4.4

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-11-17 08:49:01 -06:00
Thomas Madlener
53c7edb0ad
lcio: Add latest tag 2.20.1 (#41102) 2023-11-17 08:24:43 -06:00
Massimiliano Culpo
54ab0872f2
py-archspec: add v0.2.2 (#41110) 2023-11-17 11:22:32 +01:00
Harmen Stoppels
1b66cbacf0
llvm: patch missing cstdint include (#41108)
* llvm: patch missing cstdint include
2023-11-17 10:17:25 +01:00