Commit graph

33767 commits

Author SHA1 Message Date
jmuddnv
f609093c6e
Adding NVIDIA HPC SDK 23.9 (#40371) 2023-10-09 12:35:59 +02:00
Joe Schoonover
eb4fd98f09
feq-parse: add v2.0.3 (#40230) 2023-10-09 12:31:23 +02:00
Harmen Stoppels
08da9a854a
parser: use non-capturing groups (#40373) 2023-10-09 07:18:27 +02:00
Mark (he/his) C. Miller
3a18fe04cc
Update CITATION.cff with conf dates (#40375)
Add `start-date` and `end-date` to citation
2023-10-08 18:04:25 -07:00
Harmen Stoppels
512e41a84a
py-setuptools: sdist + rpath patch backport (#40205) 2023-10-08 11:47:36 -06:00
Alex Richert
8089aedde1
gettext: Add static and pic options (#37957) 2023-10-08 17:42:21 +02:00
Manuela Kuhn
6b9e103305
py-tables: add 3.9.0 (#40340)
* py-tables: add 3.9.0

* Add conflict with apple-clang
2023-10-08 10:28:13 -05:00
Jen Herting
00396fbe6c
[py-tokenizers] added version 0.13.3 (#40360) 2023-10-08 10:27:18 -05:00
Jen Herting
a3be9cb853
[py-tensorboardx] Added version 2.6.2.2 (#39731)
* [py-tensorboardx] Added version 2.6.2.2

* [py-tensorboardx] flake8

* [py-tensorboardx] requires py-setuptools-scm
2023-10-08 10:21:55 -05:00
Jen Herting
81f58229ab
py-torch-sparse: add v0.6.17 (#39495)
* [py-torch-sparse] New version 0.6.17

* [py-torch-sparse] added dependency on parallel-hashmap

* [py-torch-sparse]

- spack only supports python@3.7:
- py-pytest-runner only needed with old versions
2023-10-08 10:20:46 -05:00
Jen Herting
2eb16a8ea2
[py-lvis] New package (#39080)
* [py-lvis] New package

* [py-lvis] flake8

* [py-lvis] os agnostic

* [py-lvis] added comment for imported dependency

* [py-lvis] style fix
2023-10-08 10:18:01 -05:00
Manuela Kuhn
9db782f8d9
py-bids-validator: add 1.13.1 (#40356)
* py-bids-validator: add 1.13.1

* Fix style
2023-10-08 10:16:08 -05:00
Lydéric Debusschère
633df54520
[add] py-cylc-flow: new recipe (#39986)
* [add] py-cylc-flow: new recipe

* py-cylc-flow: fix py-protobuf version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cylc-flow: fix py-colorama version

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-cylc-flow: Update dependence on py-aiofiles

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-cylc-flow: Update dependence on py-pyzmq

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-cylcflow: remove useless dependence

* py-cylc-flow: fix indent

* py-cylc-flow: fix argument in depends_on; move lines

* py-cylc-flow: fix the type of the dependence py-setuptools

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: LydDeb <lyderic.debusschere.tgcc@cea.fr>
2023-10-08 10:06:13 -05:00
Mark (he/his) C. Miller
e2a7f2ee9a
Update CITATION.cff (#40363)
You will note the `Cite this repository` link is not working.

This commit fixes the underlying file...

* `authors` was not indented
* `authors` required by `preferred-citation`
* `authors` list required at top level (I simply duplicated)
* `"USA"` not correct country code
* `month` requires an integer month number
* Added URL to the actual pdf of the cited paper
* Used `identifiers` for doi and LLNL doc number
* added `abstract` copied from paper

Various fixes were confirmed by `cffconvert` using `docker run -v `pwd`:/app citationcff/cffconvert --validate`
2023-10-07 17:44:31 -07:00
Massimiliano Culpo
28c49930e2
Remove warning for custom module configuration, when no module is enabled (#40358)
The warning was added in v0.20 and was slated for removal in v0.21
2023-10-07 09:21:04 +02:00
Ken Raffenetti
6c1868f8ae
yaksa: add version 0.3 (#40368) 2023-10-06 22:28:15 -06:00
Massimiliano Culpo
4f992475f4
Python add v3.11.5 (#40330) 2023-10-06 18:03:00 -06:00
Alex Richert
7a358c9005
Change 'exit' to 'return' in setup-env.sh (#36137)
* Change 'exit' to 'return' in `setup-env.sh` to avoid losing shell in some cases when sourcing twice.
2023-10-06 16:19:19 -07:00
Veselin Dobrev
b5079614b0
MFEM: add new version v4.6 (#40170)
* [mfem] Initial changes for v4.6

* [@spackbot] updating style on behalf of v-dobrev

* [mfem] Set the proper download link for v4.6
2023-10-06 15:31:23 -07:00
Alex Richert
482525d0f9
Update bufr recipe (#40033)
* Update bufr recipe
* Add v12.0.1
* style fixes
* remove test-related functionality for bufr
* Re-add testing

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-10-06 15:04:51 -07:00
snehring
599220924d
wise2: adding new package wise2 (#40341) 2023-10-06 14:24:44 -07:00
Harmen Stoppels
d341be83e5
VersionRange: improve error message for empty range (#40345) 2023-10-06 14:19:49 -07:00
George Young
b027d7d0de
metal: new package @2020-05-05 (#40355)
* metal: new package
* style

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-06 14:14:45 -07:00
Howard Pritchard
0357df0c8b
openmpi: add 4.1.6 release (#40361)
related to #40232

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-10-06 13:06:37 -07:00
Edward Hartnett
f70ae6e3c4
g2: updated for 3.4.8 release (#40366)
* updated for 3.4.8 release
2023-10-06 13:02:17 -07:00
Manuela Kuhn
921ed1c21b
py-expecttest: new package (#40347) 2023-10-06 14:34:47 -05:00
Manuela Kuhn
c95d43771a
py-asttokens: add 2.4.0 (#40349) 2023-10-06 14:33:56 -05:00
Manuela Kuhn
db3d816f8b
py-argcomplete: add 3.1.2 (#40348) 2023-10-06 14:32:21 -05:00
Manuela Kuhn
1d6a142608
py-anyio: add 4.0.0 (#40346) 2023-10-06 14:27:53 -05:00
George Young
98271c3712
topaz: new package @0.2.5 (#40352)
* topaz: new package @0.2.5

* switching over to pypi

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-06 13:00:03 -06:00
Manuela Kuhn
e3f6df884e
py-zipp: add 3.17.0 (#40278)
* py-zipp: add 3.17.0

* Re-add python@3.7 dependency
2023-10-06 13:54:25 -05:00
Sam Gillingham
b0f36b2cd9
RIOS: add recent versions (#40243)
* add recent versions of RIOS

* fix depends_on syntax

* fix typo

* fix sha and add parallel variant

* remove self

* try doing in one
2023-10-06 13:52:15 -05:00
Lydéric Debusschère
5524492e25
[add] py-metomi-rose: new recipe, required by py-cylc-rose (#39981)
* [add] py-metomi-rose: new recipe, required by py-cylc-rose

* py-metomi-rose: remove version constraint on python

---------

Co-authored-by: LydDeb <lyderic.debusschere.tgcc@cea.fr>
2023-10-06 13:49:59 -05:00
Sam Gillingham
112f045352
py-tuiview: add recent versions of tuiview (#40244)
* add recent versions of tuiview and remove Qt4 version

* reformat

* fix stray tabs

* add back a deprecated 1.1.7

* tabs

* more tabs

* reformat

* comma
2023-10-06 13:49:06 -05:00
Harmen Stoppels
72ed8711a7
unparse: drop python 2 remnants (#40329) 2023-10-06 09:42:47 -07:00
Harmen Stoppels
55e0c2c900
openssh: 9.5p1 (#40354) 2023-10-06 09:37:42 -07:00
Massimiliano Culpo
e20c05fcdf
Make "minimal" the default duplicate strategy (#39621)
* Allow branching out of the "generic build" unification set

For cases like the one in https://github.com/spack/spack/pull/39661
we need to relax rules on unification sets.

The issue is that, right now, nodes in the "generic build" unification
set are unified together with their build dependencies. This was done
out of caution to avoid the risk of circular dependencies, which would
ultimately cause a very slow solve.

For build-tools like Cython, however, the build dependencies is masked
by a long chain of "build, run" dependencies that belong in the
"generic build" unification space.

To allow splitting on cases like this, we relax the rule disallowing
branching out of the "generic build" unification set.

* Fix issue with pure build virtual dependencies

Pure build virtual dependencies were not accounted properly in the
list of possible virtuals. This caused some facts connecting virtuals
to the corresponding providers to not be emitted, and in the end
lead to unsat problems.

* Fixed a few issues in packages

py-gevent: restore dependency on py-cython@3
jsoncpp: fix typo in build dependency
ecp-data-vis-sdk: update spack.yaml and cmake recipe
py-statsmodels: add v0.13.5

* Make dependency on "blt" of type "build"
2023-10-06 10:24:21 +02:00
Harmen Stoppels
36183eac40
python: add 3.12.0 (but keep 3.11 preferred) (#40282) 2023-10-06 09:44:09 +02:00
Alex Richert
7254c76b68
ecFlow update (#40305)
* Support static openssl for ecflow

* Update ecflow/static openssl

* Update ssl settings in ecflow

* add pic variant for ecflow

* style fix

* Update package.py

* Update package.py
2023-10-05 20:04:44 -07:00
eugeneswalker
e0e6ff5a68
Revert "cray rhel: disable due to runner issues (#40324)" (#40335)
This reverts commit bf7f54449b.
2023-10-05 10:32:52 -07:00
snehring
b0d49d4973
pbmpi: adding new version and maintainer (#40319) 2023-10-05 10:13:50 -07:00
Harmen Stoppels
4ce5d14066
unparse: drop python 3.4 remnants (#40333) 2023-10-05 09:52:23 -07:00
Thomas Madlener
9e9653ac58
whizard: Make sure to detect LCIO if requested (#40316) 2023-10-05 08:53:56 -07:00
Auriane R
bec873aec9
Add pika 0.19.0 (#40313) 2023-10-05 09:34:22 +02:00
Harmen Stoppels
bf7f54449b
cray rhel: disable due to runner issues (#40324) 2023-10-05 08:45:33 +02:00
Cameron Rutherford
9f0e3c0fed
exago: add and logging variant. (#40188) 2023-10-05 06:57:17 +02:00
eugeneswalker
79e7da9420
trilinos: add variant to build tests (#40284)
* trilinos: add variant: testing

* trilinos: rename +testing to +test
2023-10-04 16:32:30 -05:00
Harmen Stoppels
0f43074f3e
Improve build isolation in PythonPipBuilder (#40224)
We run pip with `--no-build-isolation` because we don't wanna let pip
install build deps.

As a consequence, when pip runs hooks, it runs hooks of *any* package it
can find in `sys.path`.

For Spack-built Python this includes user site packages -- there
shouldn't be any system site packages. So in this case it suffices to
set the environment variable PYTHONNOUSERSITE=1.

For external Python, more needs to be done, cause there is no env
variable that disables both system and user site packages; setting the
`python -S` flag doesn't work because pip runs subprocesses that don't
inherit this flag (and there is no API to know if -S was passed)

So, for external Python, an empty venv is created before invoking pip in
Spack's build env ensures that pip can no longer see anything but
standard libraries and `PYTHONPATH`.

The downside of this is that pip will generate shebangs that point to
the python executable from the venv. So, for external python an extra
step is necessary where we fix up shebangs post install.
2023-10-04 14:38:50 -05:00
Ken Raffenetti
d297098504
yaksa: Allow unsupported host compiler with CUDA (#40298)
Fixes #40272.
2023-10-04 09:37:58 -07:00
Josh Bowden
284eaf1afe
Damaris release v1.9.2 (#40285)
* Update to latest dot versions and improved installation of Damaris python module damaris4py

* fix for visit dependency typo

* whitespace check

* whitespace check

* fix for style issue

* reviewer suggestions for integrating Python added

* suggestion for boost depends statement added
2023-10-04 09:34:43 -06:00