Commit graph

27474 commits

Author SHA1 Message Date
Robert Blake
5bb175aede
Upgrade py-kosh to 2022-08-10 version. (#32541) 2022-09-06 21:57:57 -06:00
Laura Bellentani
92e0dbde03
quantum-espresso: add cuda support (#31869) 2022-09-06 14:45:57 -06:00
Adam J. Stewart
ab82cc5257
py-tensorflow: add v2.7.4, v2.8.3, v2.9.2 (#32500)
* py-tensorflow: add v2.7.4

* py-tensorflow: add v2.8.3

* py-tensorflow: add v2.9.2
2022-09-06 15:44:51 -05:00
luker
92018261aa
update libflame for work with crayCC, craycc, ... (#32533)
update libflame for work with crayCC, craycc, crayftn compiler wrappers. These lightweight compiler drivers do not add the `-L<lib_path>` like the CC/cc/ftn compiler drivers do. I've made a slight change to add the lib directories.
2022-09-06 11:14:06 -06:00
Seth R. Johnson
c7292aa4b6
Fix spack locking on some NFS systems (#32426)
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-09-06 09:50:59 -07:00
Massimiliano Culpo
d7d59a24d1
Mark a test xfail on Python 2.7 (#32526)
refers #32470
2022-09-06 11:56:44 +02:00
Cory Bloor
b093929f91
rocthrust: add amdgpu_target and spack build test (#31203)
This change adds support for building the rocthrust tests and adds the `amdgpu_target` 
variant to the `rocthrust` package.

- [x] rocthrust: add amdgpu_target and spack build test
- [x] Drop numactl as it is not a direct dependency
2022-09-04 19:18:33 -07:00
Tom Scogland
c25b7ea898
Apply hip workaround for raja-framework (#32469)
* add workaround for broken behavior in HIP

Hip has a longstanding cmake issue where they calculate include paths
incorrectly, this works around it for raja and adds an explicit rocprim
dependency.

* propagate openmp requirement and workaround to camp

* refactor and include umpire

* propagate openmp option to camp in umpire and use main camp for main and develop raja and umpire

* bump camp to new patch release
2022-09-02 16:55:06 -07:00
Tom Scogland
69f7a8f4d1
Reorder workflow execution in GHA (#32183)
This patchset refactors our GitHub actions into a single top-level ci workflow that
invokes a series of reusable actions.  The main goal of this is to be able to easily
control which tests run and in what order based on the success or failure of top-level
prechecks.  Our previous workflows ran in three sets:

* nix tests: style and verification first, then linux and macos tests if successful
* windows tests: style and verification first, then linux and macos tests if successful
* bootstrap tests

As a result, the bootstrap tests ran even if the style failed, and style and verification
had to run on two different platforms despite running identical checks.  I'm relatively
sure that's because of the limitation on dependencies between steps in the jobs.
Reusable workflows allow us to run the style, verification and now audit checks once,
then depending on the results, and the files changed, run the appropriate nix, windows
and bootstrap tests.  While it saves only a few minutes by itself, this makes it easier to
refactor checks to subset tests without having to replicate tests or other workflow
components in the future.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-09-02 14:09:23 -07:00
Harmen Stoppels
80389911cc
Update bootstrap buildcache to v0.3 (#32262)
This release allow to bootstrap patchelf from binaries.
2022-09-02 12:48:46 +02:00
Timothy Brown
a2e829c7b9
[CURL] New version. (#32481)
Adding a new version of curl. This addresses issue [9081](https://github.com/curl/curl/issues/9081).
2022-09-02 01:57:58 -06:00
Alex Hedges
85446f7a96
tree: add 2.0.3 (#32463)
Fix GCC compiler warnings due to not using C99 mode

CC should be overriden with Spack's value, and the other flags needed
to be copied from the Makefile.
2022-09-02 09:44:43 +02:00
Adam J. Stewart
de623f240c
meson: add maintainer (#32460) 2022-09-01 20:45:46 -07:00
Adam J. Stewart
7796bf3fa0
py-pytorch-lightning: add v1.7.4 (#32464) 2022-09-01 22:15:52 +00:00
Scott Wittenburg
6239198d65
Fix cause of checksum failures in public binary mirror (#32407)
Move the copying of the buildcache to a root job that runs after all the child
pipelines have finished, so that the operation can be coordinated across all
child pipelines to remove the possibility of race conditions during potentially
simlutandous copies. This lets us ensure the .spec.json.sig and .spack files
for any spec in the root mirror always come from the same child pipeline
mirror (though which pipeline is arbitrary).  It also allows us to avoid copying
of duplicates, which we now do.
2022-09-01 15:29:44 -06:00
H. Joe Lee
d9313cf561
Upgrade version from 0.7.0-beta to 0.8.0-beta. (#32442)
The version 0.8.0-beta is released.
2022-09-01 14:53:48 -06:00
Axel Huebl
ce1500fad3
Add: py-sphinx-design (#32482)
* Add: py-sphinx-design

Needed for #32480
2022-09-01 19:25:59 +00:00
kwryankrattiger
117b0af831
Backport fix for buliding vtk-m diy with GCC 11 (#32465) 2022-09-01 11:41:20 -07:00
Peter Scheibel
2968ae667f
New command, spack change, to change existing env specs (#31995)
If you have an environment like

```
$ cat spack.yaml
spack:
  specs: [openmpi@4.1.0+cuda]
```

this PR provides a new command `spack change` that you can use to adjust environment specs from the command line:

```
$ spack change openmpi~cuda
$ cat spack.yaml
spack:
  specs: [openmpi@4.1.0~cuda]
```

in other words, this allows you to tweak the details of environment specs from the command line.

Notes:

* This is only allowed for environments that do not define matrices
  * This is possible but not anticipated to be needed immediately
  * If this were done, it should probably only be done for "named"/not-anonymous specs (i.e. we can change `openmpi+cuda` but not spec like `+cuda` or `@4.0.1~cuda`)
2022-09-01 11:04:01 -07:00
Graeme A Stewart
92b72f186e
root: apply 6.26 COMPILE_DEFINITIONS patch unconditionally (#32472)
This bug isn't per-se tied to the root7 variant and should
be applied always for these ROOT releases
2022-09-01 17:57:50 +02:00
Weiqun Zhang
3d67c58436
amrex: add v22.09 (#32477) 2022-09-01 09:45:49 -06:00
Massimiliano Culpo
01298287f6
Fix CI for package only PRs (#32473) 2022-09-01 14:41:28 +02:00
Jordan Ogas
9dca54fdc8
use bash for autoreconf (#32466) 2022-09-01 02:29:58 -06:00
Massimiliano Culpo
0df0b9a505
Port package sanity unit tests to audits (#32405) 2022-09-01 08:21:12 +02:00
Michael Kuhn
c4647a9c1f
meson: add 0.63.1 (#32441) 2022-08-31 20:45:52 -06:00
marcost2
597af9210f
perl-bignum: Adding perl module (#31590) 2022-08-31 21:07:41 -05:00
Adam J. Stewart
986e8fd6c5
py-black: add v22.8.0 (#32468) 2022-08-31 19:53:46 -06:00
Wouter Deconinck
c75c27c95c
gdk-pixbuf: only build tests when requested (#32452)
The building of tests is optional [as of 2.42.9](801eef111d). This applies this option in the build.

The reason the option was added was to deal with test build failures in sandboxed environments and with certain glibc versions (caused by glib gresources). For example, with the latest version glibc and in the latest version of docker these tests [cannot be built](https://github.com/moby/moby/issues/43595).
2022-08-31 16:16:22 -07:00
Adam J. Stewart
f1f831edef
py-pandas: add v1.4.4 (#32459) 2022-08-31 14:27:15 -07:00
Satish Balay
60f37e8c88
llvm: fix 15.0.0rc builds on MacOS with command-line-tools (#32397)
* llvm: fix 15.0.0rc builds on MacOS with command-line-tools

Ref: https://github.com/llvm/llvm-project/issues/57037

i.e use -DBUILTINS_CMAKE_ARGS=-DCOMPILER_RT_ENABLE_IOS=OFF. But this needs switching "compiler-rt" from "projects" to "runtimes".

Also fixing the warnings below fixes compile errors

CMake Warning at CMakeLists.txt:101 (message):
  Using LLVM_ENABLE_PROJECTS=libcxx is deprecated now, please use
  -DLLVM_ENABLE_RUNTIMES=libcxx or see the instructions at
  https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes.


CMake Warning at CMakeLists.txt:101 (message):
  Using LLVM_ENABLE_PROJECTS=libcxxabi is deprecated now, please use
  -DLLVM_ENABLE_RUNTIMES=libcxxabi or see the instructions at
  https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes.


CMake Warning at CMakeLists.txt:101 (message):
  Using LLVM_ENABLE_PROJECTS=libunwind is deprecated now, please use
  -DLLVM_ENABLE_RUNTIMES=libunwind or see the instructions at
  https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes.


/private/var/folders/nt/_m1t_x7j76q6sl3xt91tqgs00000gn/T/balay/spack-stage/spack-stage-llvm-15.0.0-rc2-h2t5bohzyy7exz2ub3m42pfycjcmbndk/spack-build-h2t5boh/include/c++/v1/cstdlib:135:9: error: no member named 'at_quick_exit' in the global namespace
using ::at_quick_exit _LIBCPP_USING_IF_EXISTS;
      ~~^

* Update var/spack/repos/builtin/packages/llvm/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-31 13:29:07 -07:00
Massimiliano Culpo
0c6e3188ac
ASP-based solver: allow to reuse installed externals (#31558)
fixes #31484

Before this change if anything was matching an external
condition, it was considered "external" and thus something
to be "built".

This was happening in particular to external packages
that were re-read from the DB, which then couldn't be
reused, causing the problems shown in #31484.

This PR fixes the issue by excluding specs with a
"hash" from being considered "external"

* Test that users have a way to select a virtual

This ought to be solved by extending the "require"
attribute to virtual packages, so that one can:
```yaml
mpi:
  require: 'multi-provider-mpi'
```

* Prevent conflicts to be enforced on specs that can be reused.

* Rename the "external_only" fact to "buildable_false", to better reflect its origin
2022-08-31 20:05:55 +00:00
Seth R. Johnson
08261af4ab
py-breathe: add new version and improve version constraints (#31857)
* py-breathe: add new version and improve version constraints

* py-breathe: everyone loves versions

```
py-breathe, py-breathe in the air
don't be afraid to care
````

* Update var/spack/repos/builtin/packages/py-breathe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add comment

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-31 17:23:19 +00:00
Larry Knox
62e4177e44
hdf5-vol-log: Update package versions and update HDF5 dependency to version 1.13.2 (#32448)
* Add HDF5 version 1.13.2.
Remove HDF5 versions 1.13.0 and 1.13.1.

* Correct formatting.

* Update vol-log-based versions and HDF5 dependency version.
2022-08-31 06:29:15 -07:00
Ivan Maidanski
74506a2a83
bdw-gc: add v8.2.2 (#32453) 2022-08-31 06:18:49 -07:00
Adam J. Stewart
5fcfce18fd
py-gpytorch: add v1.9.0 (#32445) 2022-08-30 11:34:06 -07:00
Adam J. Stewart
c07c4629ff
py-kornia: add v0.6.7 (#32447) 2022-08-30 11:33:49 -07:00
Tamara Dahlgren
3894ceebc9
Environments: Add support for include URLs (#29026)
* Preliminary support for include URLs in spack.yaml (environment) files

This commit adds support in environments for external configuration files obtained from a URL with a preference for grabbing raw text from GitHub and gitlab for efficient downloads of the relevant files. The URL can also be a link to a directory that contains multiple configuration files.

Remote configuration files are retrieved and cached for the environment. Configuration files with the same name will not be overwritten once cached.
2022-08-30 11:13:23 -07:00
Ryan Marcellino
b35a0b1b40
New package: py-mkdocstrings-python (#32421) 2022-08-30 10:27:02 -07:00
Gregory Lee
543a797d1a
added STAT 4.2.0 and updated deps (#32385)
* added STAT 4.2.0 and updated deps

* launchmon package fix and style fixes

* launchmon package fix

* Update var/spack/repos/builtin/packages/launchmon/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30 09:25:55 -06:00
Ivan Maidanski
08c67302fc
libatomic_ops: add v7.6.14 (#32418)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30 06:00:09 -07:00
Harmen Stoppels
33cb61afb9
libxml2: fix building with nvhpc (#32440) 2022-08-30 06:13:47 -06:00
Wouter Deconinck
43ae15a887
root: new bugfix version 6.26.06 (#32230) 2022-08-30 10:31:17 +02:00
Toyohisa Kameyama
a735dc027d
oprnmx: fix to build with Fujitsu compiler. (#32389) 2022-08-30 10:26:15 +02:00
Olivier Cessenat
5be9f4dfef
coreutils: add support for external find (#32414) 2022-08-30 02:26:02 -06:00
David M. Rogers
d75234b675
hipsycl: fix building on OSX. Patch boost to be backward-compatible. (#31311)
Co-authored-by: frobnitzem <frobnitzem@users.noreply.github.com>
2022-08-30 10:22:34 +02:00
luker
3779e645b8
scorep: modify configure flags for Cray platforms (#32201) 2022-08-30 00:25:35 -07:00
Olivier Cessenat
7f4799a4a2
visit: actually set the dev env for plugins again (#32427) 2022-08-30 08:02:23 +02:00
Jim Edwards
a09d4ffb4e
esmf: update package for cce (cray) compiler (#32433) 2022-08-30 07:53:45 +02:00
robgics
0c9b4bc3d2
Initial commit for freesurfer package (#32395)
* Initial commit for freesurfer package

* Add myself as maintainer

* Change URLs to https and move url function to proper place.
2022-08-29 14:35:34 -07:00
snehring
778af070f0
snphylo: update to new version (#32425) 2022-08-29 11:56:57 -07:00