Commit graph

3957 commits

Author SHA1 Message Date
Denis Davydov
aad5a4c4b3 mkl: flake8 fixes; minor docu update 2016-07-29 14:12:07 +02:00
Denis Davydov
b6ce0e6f0e trilinos: make sure hdf5 is picked up from Spack 2016-07-29 13:11:12 +02:00
Denis Davydov
943896e237 trilinos: fix lapack lib dir 2016-07-29 13:09:34 +02:00
Denis Davydov
8ee4df8101 hypre: minor cleanup related to blas/lapack 2016-07-29 11:37:19 +02:00
Denis Davydov
572f1cd427 mkl: symlink libs to prefix.lib 2016-07-29 11:36:37 +02:00
becker33
7220bc1766 Merge pull request #1340 from adamjstewart/features/create
Use example deptypes in newly created packages
2016-07-22 14:25:12 -07:00
Todd Gamblin
395c616a48 Merge pull request #950 from xjrc/packages/python
Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
2016-07-22 13:56:19 -07:00
Adam J. Stewart
ebbcebac62 Use example deptypes in newly created packages 2016-07-22 13:55:00 -05:00
Joseph Ciurej
fa92f58167 Adding temporary script that fixes all Python extensions w/ 'setup_py'. 2016-07-22 11:17:19 -07:00
Joseph Ciurej
ac2e0962ce Improved the build flag construction code in the python install method. 2016-07-22 11:12:02 -07:00
Joseph Ciurej
fb2d2303d6 Fixed a bug that was causing Python installs to be affected by user config. 2016-07-22 11:11:08 -07:00
Todd Gamblin
f5b4664c7c Merge pull request #1336 from glennpj/rcase
Fix alpha case of dependencies for some r-packages
2016-07-22 10:08:14 -07:00
Todd Gamblin
adffba5081 Merge pull request #1230 from hartzell/update-jdk
Add URL and md5 for jdk-8u92.
2016-07-21 22:06:29 -07:00
Glenn Johnson
e083c91d5e Fix alpha case of dependencies.
A while ago I was asked to convert packages to all lowercase. That was
done but some dependencies did not get converted in the specification.
This commit fixes that as well as a couple of urls that need to be made
explicit and a missing dependency on jdk.
2016-07-21 19:58:04 -05:00
Todd Gamblin
ed737cb2a2 Merge pull request #1333 from LLNL/features/no-openssl-pinging
Remove remote website pinging from OpenSSL
2016-07-21 16:46:59 -07:00
Todd Gamblin
488550c2e6 Merge pull request #1334 from hartzell/add-gcc-5.4.0
Update gcc package with info about gcc-5.4.0
2016-07-21 16:37:31 -07:00
Todd Gamblin
8523f75e6c Remove remote website pinging from OpenSSL
- OpenSSL no longer checks remote versions on the openssl site.

- Spack is used on systems that aren't connected to the internet, and
  this check is probably in the wrong place and affects too many
  commands.  We can work on figuring out a better, more configurable
  place to put a check like this.
2016-07-21 16:35:20 -07:00
Todd Gamblin
4707362ccd Merge pull request #1263 from hartzell/lmod-needs-tcl
The lmod package should depend_on('tcl')
2016-07-21 16:32:54 -07:00
becker33
dd5b1ac098 Merge pull request #1335 from LLNL/crayxc-detection
Crayxc detection
2016-07-21 15:06:42 -07:00
Gregory Becker
bcbe9c02da Added cray wrapper names directory to spack_env_paths so the spack compiler wrapper will remove them from the environment (prevents hang) 2016-07-21 14:50:23 -07:00
Gregory Becker
1544f98ee0 fixed flake8 errors 2016-07-21 14:36:10 -07:00
Gregory Becker
f0d5317913 fixed 2016-07-21 14:11:34 -07:00
Gregory Becker
2ae7429b18 Bug fix for cray_xc platform 2016-07-21 14:04:22 -07:00
George Hartzell
4efe022165 Update with info about gcc-5.4.0 2016-07-21 15:36:22 -04:00
George Hartzell
4c105895ab Fix flake8 violations 2016-07-21 14:24:51 -04:00
George Hartzell
9523e50732 Fix shebang line in tcl scripts
Lmod's configure script goes to the trouble of finding
tclsh.  This change uses that info to rewrite the #! lines
in the tcl scripts so that they call the tclsh that the
configure script discovered.

It needs to massage the existing shebang lines into something
that the sed statement in the makefile can manipulate and
it needs to add the path_to_tclsh info into the set of sed
statements.

Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is
incorrect, a fix for another time).
2016-07-21 13:58:16 -04:00
George Hartzell
52f0249c61 tcl is actually a runtime dependency.
lmod uses tclsh at runtime, so adjust the depends_on accordingly
(thanks @davydden!).
2016-07-21 13:51:03 -04:00
George Hartzell
a27cb639d8 The lmod package should depend_on('tcl')
The lmod package needs a tclsh.  Up until now it just assumed
that one was available on the system.

This change adds a depends_on('tcl') to the lmod package.

The tcl package installs a tclsh script with an embedded version
number (e.g. tclsh8.6) but the lmod configuration looks for tclsh.
This change extends the tcl package to symlink tclshX.Y to tclsh in
the tcl package bin directory.
2016-07-21 13:51:03 -04:00
Todd Gamblin
098af17971 Merge pull request #1208 from paulhopkins/bugfix/github1196-specify-preferred-variants
Bugfix/github1196 specify preferred variants
2016-07-21 08:36:19 -07:00
Todd Gamblin
5745ede31d Merge pull request #1328 from suraia/fix-recursive-module-load
Fix recursive module loading
2016-07-21 08:34:36 -07:00
Todd Gamblin
0b1d03abe6 Merge pull request #1327 from suraia/update-load-documentation
Update documentation for recursive module loading
2016-07-21 08:33:40 -07:00
Paul Hopkins
00280936da Flake8 fixes to ensure qa tests pass 2016-07-21 13:12:58 +01:00
Paul Hopkins
480fe9cb9a Re-add documentation for variant preferences 2016-07-21 12:32:00 +01:00
Paul Hopkins
bd91dd9d6d Allow users to supply preferred variants via packages.yaml 2016-07-21 12:32:00 +01:00
Michael Kuhn
732c24f603 Fix recursive module loading. 2016-07-21 13:15:53 +02:00
Michael Kuhn
4e1f86881a Update documentation for recursive module loading. 2016-07-21 13:15:10 +02:00
Gregory Lee
07d4c6cf0b Merge pull request #1205 from glennpj/psxe
Setup environment for Intel Parallel Studio
2016-07-20 21:14:34 -07:00
Glenn Johnson
ead1b93f75 MPI related changes
- Redid the code for setting the itac symlink for the cluster edition.
- Removed the *PATH variables for MPI to avoid a conflict with other MPI
  environment modules.
- Added missing test for `+all` when checking variants.
2016-07-20 20:03:05 -05:00
Glenn Johnson
0be4c7dfbd Changes as discussed in PR review
- removed unneeded entry for `debugger/gdb/intel64_mic`
- set `+mpi` directory name to impi
2016-07-20 20:03:05 -05:00
Glenn Johnson
5e5e36a659 Fix flake8 errors. 2016-07-20 19:54:35 -05:00
Glenn Johnson
16f67b5bb1 Setup environment for Intel Parallel Studio
Set up the environment for the Intel compilers and tools. This commit
does the following:

- Unset variables that were incorrect from the auto guess prefix
  inspections.
- Add a RemovePath environment_modifications_formats for dotkit.
- Set the module environment variables appropriate for the different
  variants.
- Change the component logic so that the '+all' variant works. It was
  getting split by letter and leaving COMPONENTS empty.
- Added a variant checking function.
- Added NONRPM_DB_DIR to the silent.cfg so that the product database
  goes to the installation directory.
- With the product database in prefix the code to remove the product
  database file from the home directory is no longer needed and was
  removed.
- Reformat the 'tools' variant description.

There are probably more variables needed for the '+tools' for the
'professional' product version but I do not have access to that.
2016-07-20 19:54:35 -05:00
Todd Gamblin
e389afedaa Merge pull request #1323 from glennpj/rlib
Set environment variables for R
2016-07-20 15:43:26 -07:00
Todd Gamblin
b9c79824a2 Merge pull request #1313 from sknigh/gnu-tools
Added packages for GNU tools screen, datamash, and parallel
2016-07-20 15:38:55 -07:00
Todd Gamblin
0777d3a5ba Merge pull request #1326 from mwilliammyers/package-openexr
openexr : Add new package
2016-07-20 15:35:36 -07:00
Glenn Johnson
0c75174ec3 Fix indent/flake8 error. 2016-07-20 15:56:20 -05:00
mwilliammyers
e973adf84b openexr : Add new package 2016-07-20 14:49:03 -06:00
Glenn Johnson
f9137f606f Set environment variables
This commit adds `setup_environment` to export the libraries and
headers.

Fixes #1314.
2016-07-20 15:37:31 -05:00
Todd Gamblin
8856a226c7 Merge pull request #1277 from mathstuf/special-deptypes
deptypes: support special deptypes by string
2016-07-20 13:15:57 -07:00
Todd Gamblin
d8acd41ba1 Merge pull request #1321 from mwilliammyers/package-ilmbase
ilmbase : Add new IlmBase package
2016-07-20 13:13:21 -07:00
Todd Gamblin
8efbec3c0b Merge pull request #1292 from eschnett/eschnett/hdf5-default-1.10
Make newest HDF5 release the default version
2016-07-20 12:57:45 -07:00