Commit graph

26104 commits

Author SHA1 Message Date
kwryankrattiger
a91ae8cafe
ecp-data-vis-sdk: Drop fortran from ascent spec. (#30707) 2022-05-17 16:53:52 -04:00
Chuck Atkins
b9e3ee6dd0
glew: Fix glu and glx dependencies (#30705) 2022-05-17 10:19:19 -07:00
iarspider
10ea0a2a3e
Update rivet to 3.1.6, yoda to 1.9.5; fix recipes (#30702)
* Update rivet to 3.1.6, yoda to 1.9.5; fix recipes

* Use filter_compiler_wrappers instead of custom post-install step
2022-05-17 10:17:24 -07:00
Harmen Stoppels
d6f8ffc6bc
add julia 1.6.6 (#30703) 2022-05-17 09:52:46 -07:00
haralmha
02be2f27d1
flatbuffers: Add version 2.0.6 (#30704) 2022-05-17 09:51:02 -07:00
Adam J. Stewart
dfd0702aec
GDAL: deprecate 2.X (#30668) 2022-05-17 08:45:55 -07:00
Massimiliano Culpo
f454a683b5
Mark test_repo_last_mtime xfail on Python < 3.5 (#30696) 2022-05-17 12:45:52 +02:00
Chuck Atkins
d7d0c892d8
silo: Make HDF5 version deps more robust (#30693) 2022-05-17 04:26:35 -04:00
snehring
d566330a33
pindel: fixing compilation issues for gcc5+ (#28387) 2022-05-17 09:45:08 +02:00
Alex Hedges
446cbf4b5a
sed: add v4.8.0, set gnu_mirror_path per version (#30666) 2022-05-17 09:43:01 +02:00
Tim Haines
5153c9e98c
boost: constrain context-impl variant (#30654) 2022-05-17 09:42:19 +02:00
h-murai
d74f2d0be5
petsc: fix an error about handling a provider of Scalapack. (#30682) 2022-05-17 09:33:49 +02:00
Jianshen Liu
021b65d76f
cppcheck: add v2.7 (#30698) 2022-05-17 07:29:46 +00:00
Adam J. Stewart
45312d49be
Bazel: remove maintainer (#30697) 2022-05-17 09:29:22 +02:00
Chuck Atkins
3fcd85efe9
autoconf-archive: Patch for nvhpc support and propagate search dirs (#30692) 2022-05-17 03:29:42 +00:00
Alberto Madonna
6f3a082c3e
runc: symlink sbin to bin to find it in $PATH (#30691) 2022-05-17 02:48:04 +02:00
stepanvanecek
23e2820547
sys-sage: new spack package (#30570)
* sys-sage - adding new package

* sys-sage: updated release verison

* sys-sage: remove FIXMEs from the package

* add libllvm dependency

* sys-sage: remove unnecessary libllvm dependency

Co-authored-by: Stepan Vanecek <stepan.vanecek@tum.de>
2022-05-16 17:01:34 -07:00
Sreenivasa Murthy Kolam
22b999fcd4
Add miopentensile-new recipe for ROCm-5.0.0 . ROCm-5.1.0 release (#29313)
* miopentensile-new recipe for rocm-5.0.0 release

* fix style checks

* update the version for 5.1.0 release, avoid git download
2022-05-16 16:19:35 -07:00
Michael Kuhn
1df7de62ca
py-cffconvert: new package (#30694) 2022-05-16 23:16:32 +00:00
andymwood
97ec8f1d19
Avoid calling a method on a NoneType object (#30637) 2022-05-16 21:59:08 +00:00
iarspider
63b6e484fc
sigcpp: protect from missing prefix.share folder (#30686) 2022-05-16 13:34:57 -07:00
Nick Forrington
2b12d19314
arm-forge: Versions up to 22.0.1 + minor updates (#30689)
* arm-forge: Download via HTTPS

Update download URL to use HTTPS (rather than HTTP)

* arm-forge: Allow +probe to depend on python3

Allow python dependency required for arm-forge+probe to be python3 as
well as 2.7.x

* arm-forge: Add versions up to 22.0.1
2022-05-16 14:30:19 -06:00
Francesco Giordano
c37fcccd7c
aws-parallelcluster: add v2.11.7 (#30685) 2022-05-16 14:29:53 -06:00
Michael Kuhn
6034b5afc2
fix pkgconfig dependencies (#30688)
pkgconfig is the correct dependency, pkg-config is a provider of it.
2022-05-16 14:01:41 -06:00
Michael Kuhn
17bc937083
libfuse: add utils variant (#30675)
By default, libfuse install helper programs like `fusermount3`, which
are mostly useless if not installed with setuid (that is, `+useroot`).

However, their presence makes it complicated to use globally installed
versions, which can be combined with a Spack-installed FUSE library.

In particular, on systems that have a setuid fusermount3 binary, but no
libfuse-dev installed, it is nice to be able to build libfuse with Spack, and
have it call the system setuid executable.
2022-05-16 13:01:44 -06:00
renjithravindrankannath
ad8db0680d
Correcting include and library paths using patch file for RVS (#30294)
* Correcting include and library paths using patch file for RVS to build
following library files in spack.
libperf.so.0.0
libpebb.so.0.0
libiet.so.0.0
libgst.so.0.0
libpqt.so.0.0
libmem.so.0.0
libbabel.so.0.0

* Correcting include and library paths using patch file for RVS to build
following library files in spack.
libperf.so.0.0
libpebb.so.0.0
libiet.so.0.0
libgst.so.0.0
libpqt.so.0.0
libmem.so.0.0
libbabel.so.0.0

* Replacing ROCM_PATH with RPATH in the deviceid.sh before installing in Spack build.

* Reducing multiple enviroment variable for HIP and HSA path
2022-05-16 09:44:59 -07:00
estewart08
4f033b155b
[AMD][rocm-openmp-extras] - Update versions 5.0.0 through 5.1.0. (#30501)
- Removed gl dependency.
- Specify clang as cmake compiler as gcc was being
  improperly picked up. As a result, ffi include
  path was needed in C/CXX flags.

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-16 09:22:48 -07:00
Sreenivasa Murthy Kolam
ad829ccee1
Apply cyclades removal patch for the llvm-amdgpu package (#29376)
* apply cyclades removal patch for the llvm-amdgpu spack package

* update the changes with develop branch
2022-05-16 09:15:26 -07:00
Tom Vander Aa
4b60a17174
Extrae: add support for Intel OneAPI (#30684) 2022-05-16 09:02:00 -06:00
Ethan Stam
edb91f4077
ParaView: -no-ipo for intel builds (#18193) 2022-05-16 08:01:34 -06:00
Todd Gamblin
0fdc3bf420
bugfix: use deterministic edge order for spack graph (#30681)
Previously we sorted by hash values for `spack graph`, but changing hashes can make the
test brittle and the node order seem nondeterministic to users.

- [x] Sort nodes in `spack graph` by the default edge order, which takes into account
      parent and child names as well as dependency types.
- [x] Update ASCII test output for new order.
2022-05-16 11:36:41 +02:00
Francine Lapid
8b34cabb16
subversion: added apxs support (#30381) 2022-05-16 10:42:15 +02:00
haralmha
77fb651e01
frontier-client: adapt pacparser_setmyip function to new pacparser release (#29936) 2022-05-16 10:41:21 +02:00
Harmen Stoppels
35ed7973e2
eccodes, fix jasper again (#30635)
* eccodes: jasper@:2

* Revert "jasper: avoid --gc-sections / hidden symbols"

This reverts commit d1bc0f39c516a7dc1e941aa4a804b7468a200b75.

* bump ecbuild, drop cmake constraint for newer versions

* add ecbuild dep to eccodes@develop
2022-05-16 10:40:35 +02:00
snehring
e73b19024f
bpp-suite and deps: urls to GitHub (#30665)
* bpp-core: moving url to github. Fixing compilation issue.

* bpp-phyl: moving url to github.

* bpp-seq: moving url to github

* bpp-popgen: new package

* bpp-suite: moving url to github, new version.

* bpp-popgen: removing unused cmake_args.
2022-05-16 10:23:39 +02:00
Alex Hedges
7803bc9e5f
screen: add v4.9.0, add required build deps (#30667) 2022-05-16 10:11:02 +02:00
dlkuehn
55c400297c
treesub: change jdk dependency to java, add build to java dep. type (#30672)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-05-16 10:06:09 +02:00
Umar Arshad
8686e18494
clblast: add new package (#30677) 2022-05-16 10:03:15 +02:00
Diego Alvarez
d28967bbf3
nextflow: add v22.04.1 (#30679) 2022-05-16 09:01:15 +02:00
Diego Alvarez
5f928f71c0
openjdk: add 11.0.15+10, 17.0.3+7 (#30680) 2022-05-16 08:58:51 +02:00
Ken Raffenetti
dc7bdf5f24
mpich: add support for Mellanox HCOLL (#30662)
Co-authored-by: Federico Ficarelli <federico.ficarelli@pm.me>
2022-05-15 14:14:47 +02:00
Danny McClanahan
a681fd7b42
Introduce GroupedExceptionHandler and use it to simplify bootstrap error handling (#30192) 2022-05-15 10:59:11 +00:00
Alberto Invernizzi
f40f1b5c7c
Fix for spack stage command not extracting packages in custom paths (#30448) 2022-05-15 12:13:42 +02:00
Michael Kuhn
edd3cf0b17
qt: add 5.15.4 (#30656) 2022-05-14 23:34:06 -06:00
Michael Kuhn
ff03e2ef4c
uninstall: fix dependency check (#30674)
The dependency check currently checks whether there are only build
dependencies left for a particular package. However, the database also
contains uninstalled packages, which can cause the check to fail.

For instance, with `bison` and `flex` having already been uninstalled,
`m4` will have the following dependents:
```
bison ('build', 'run')--> m4
flex ('build',)--> m4
libnl ('build',)--> m4
```
`bison` and `flex` should be ignored in this case because they are not
installed anymore.

Fixes #30673
2022-05-14 18:01:29 -07:00
Zack Galbreath
bee311edf3
Update GitLab environment variable name (#30671)
Use the IAM credentials that correspond to our new binary mirror
(s3://spack-binaries vs. s3://spack-binaries-develop)
2022-05-14 16:33:32 -06:00
Jen Herting
73b69cfeec
[py-pyworld] Limiting numpy version. See: https://zenn.dev/ymd_h/articles/934a90e1468a05 (#30670) 2022-05-14 09:22:31 -05:00
Cameron Smith
4a1041dbc3
CEED v5.0 release (#29710)
* ceed50: add ceed 5.0.0 and pumi 2.2.7

* libceed-0.10

* ceed50: add omegah

* omega-h: mpi and cuda builds work

* omega-h: fix style

* New package: libfms

* New version: gslib@1.0.7

CEED: add some TODO items for the 5.0 release

* ceed: variant name consistent with package name

* LAGHOS: allow newer versions of MFEM to be used with v3.1

* LIBCEED: add missing 'install' target in 'install_targets'

* CEED: address some TODO items + some tweaks

* MFEM: add new variant for FMS (libfms)

* CEED: v5.0.0 depends on 'libfms' and 'mfem+fms'

* RATEL: add missing 'install' target in 'install_targets'

* CEED: add dependency for v5.0.0 on Ratel v0.1.2

* CEED: add Nek-related dependencies for ceed@5.0.0

* CEED: v5.0.0 depends on MAGMA v2.6.2

* libCEED: set the `CUDA_ARCH` makefile parameter

* libCEED: set the `HIP_ARCH` makefile parameter

Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2022-05-13 18:29:02 -07:00
Jen Herting
ccab7bf4fd
New package: py-pyworld (#28641)
* espnet first build with depends

* added cython>=0.24.0' and type='build'

* [py-pyworld] updated copyright

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-05-13 17:19:58 -05:00
John W. Parent
e24e71be6a
Preserve Permissions on .zip extraction (#30407)
#24556 merged in support for Python's .zip file support via ZipFile.
However as per #30200 ZipFile does not preserve file permissions of
the extracted contents. This PR returns to using the `unzip`
executable on non-Windows systems (as was the case before #24556)
and now uses `tar` on Windows to extract .zip files.
2022-05-13 13:38:05 -07:00