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Author SHA1 Message Date
Todd Gamblin
a8b4a0f287 Merge pull request #1731 from epfl-scitas/packages/plumed_gslcblas 
plumed : avoid linking with libgslcblas
 2016-09-06 06:55:16 -07:00
Todd Gamblin
1cb6f31b03 Merge pull request #1732 from epfl-scitas/fixes/autoload_and_build_dependencies 
fix : ('build',) type dependencies are not accounted when autoloading
 2016-09-06 06:55:02 -07:00
alalazo
fc576a40d6 modules : ('build',) type dependencies are not accounted when autoloading 
fixes #1681
 2016-09-06 15:07:11 +02:00
alalazo
d39b666913 plumed : avoid linking with libgslcblas 2016-09-06 11:21:26 +02:00
Axel Huebl
16c5403ab3 spack boostrap: fix missing include (#1657) 
fix a missing include in booststrap.
found on debian 8 with python 2.7
 2016-09-03 09:43:00 -07:00
Massimiliano Culpo
497bbb3ae3 added package : pexsi (#1550) 
* pexsi : added package
* cp2k : added pexsi (works for gcc+openmpi with and without plumed)
 2016-09-03 08:13:47 -07:00
becker33
fa310c825d Merge pull request #1704 from eschnett/eschnett/libiconf-gets 
Make libiconv work with C11
 2016-09-02 16:46:40 -07:00
becker33
6de191a926 Merge pull request #1708 from robertdfrench/globus-toolkit 
Globus Toolkit
 2016-09-02 15:31:34 -07:00
Todd Gamblin
07fa1cd5f8 Attributes for directives need to be set at class construction time. (#1718) 
- moved ensure_dicts() call from Package.__init__ to
  Package.__metaclass__.
 2016-09-02 15:10:30 -07:00
becker33
ea6143402f Merge pull request #1715 from alfredo-gimenez/bugfix/vim 
Fix vim package.
 2016-09-02 14:59:14 -07:00
becker33
83a8a8ed22 Merge pull request #1717 from alfredo-gimenez/features/sbt 
Add sbt (scala build tool) package
 2016-09-02 14:56:44 -07:00
Alfredo Gimenez
19102559f0 Add sbt (scala build tool) package 2016-09-02 14:15:20 -07:00
Alfredo Gimenez
817c120b1c Fix vim package 2016-09-02 14:09:46 -07:00
Erik Schnetter
d78d18c4bd Update OpenMPI description (#1705) 2016-09-02 10:57:35 -07:00
Jeffrey Salmond
5146c64dfc Fixes for the ImageMagick package. (#1709) 
* add pango dependency

* add new package ghostscript-fonts & add to ImageMagick as dependency

also tell ImageMagick's configure where the font dir is!

* refactor to fix flake8

* add homepage to ghostscript-fonts

* use install_tree

* remove unneeded import
 2016-09-02 10:41:35 -07:00
Erik Schnetter
c7bb523c8f Declare qthreads dependency on automake (#1711) 2016-09-02 10:34:07 -07:00
Todd Gamblin
e22ff0d8cd Merge pull request #1707 from eschnett/eschnett/autoconf-old-versions 
Add two famous old versions of autoconf
 2016-09-02 10:32:33 -07:00
Robert.French
d876d9b778 Globus Toolkit 2016-09-02 16:04:26 +00:00
Erik Schnetter
9ceb3f6b49 Add two famous old versions of autoconf 
These old versions are often used because their immediate successors are incompatible in some way.
 2016-09-02 11:23:33 -04:00
Erik Schnetter
0bd63ce8be Make libiconv work with C11 
C11 does not provide gets() any more, so we cannot reference it
 2016-09-02 10:53:59 -04:00
Todd Gamblin
417fe0ec67 Merge pull request #1698 from LLNL/bugfix/hash-collision 
Fix hash collisions, add stable hashing
 2016-09-02 07:29:44 -07:00
Todd Gamblin
c8b4f978e1 Clean up stable hashing so that specs don't contain !!python/object/apply 
- only output basic lists, dicts, etc.
- spec and database now parse and write specs as ordered data.
 2016-09-02 03:03:47 -07:00
Todd Gamblin
674434b0fc Merge branch 'UCL-RITS-hash_stability' into bugfix/hash-collision 2016-09-02 03:03:25 -07:00
Todd Gamblin
9268b7aa7c Fix hash copying in _dup. 
- Spec._dup() incorrectly copied cached hashes and normal/concrete values
  even when dependency structure was not preserved.

- Now these are only copied when *all* dependencies are copied.
 2016-09-02 01:26:19 -07:00
Todd Gamblin
69d45b49e9 Fix hash handling in directory layout 
- Currently, build dependencies are not currently hashed; we are waiting
  to hash these until we have smarter concretization that can reuse more
  installed specs.  The layout needs to account for this when checking
  whethert things are installed.
 2016-09-02 01:26:01 -07:00
Todd Gamblin
f5bc0cbb65 Merge pull request #1535 from LLNL/bugfix/faster-install-db-gh1521 
[WIP] Faster database loading, faster in-memory hashing
 2016-09-01 13:00:21 -07:00
Todd Gamblin
8d755c010d Merge pull request #1658 from LLNL/features/git-lfs 
Add git-lfs package.
 2016-09-01 11:58:18 -07:00
Todd Gamblin
0f26bb9e92 Merge pull request #1688 from LLNL/bugfix/database-issues 
Fix dependency bug with `spack reindex`.
 2016-09-01 11:39:21 -07:00
Todd Gamblin
69b68153a1 Fix spack reindex so that it will work if DB is corrupt (duh). 
- Transaction logic had gotten complicated -- DB would not reindex when
  corrupt, rather the error would be reported (ugh).

- DB will now print the error and force a rebuild when errors are
  detected reading the old databse.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
bee5c05568 Update tests to reflect new in-memory hashing vs. coarser dag_hash. 
- Spack currently not hashing build deps (to allow more reuse of packages
  and less frequent re-installing)

- Fast in-memory hash should still hash *all* deptypes, and installed
  specs will only reflect link and run deps.

- We'll revert this when we can concretize more liberally based on what
  is already installed.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
235a045d08 Add option to copy only certain deptypes to Spec.copy() 
- can now pass these to Spec.copy() and Spec._dup():
  - deps=True
  - deps=False
  - deps=(list of deptypes)

- Makes it easy to filter out only part of a spec.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
409e7a2e64 Faster database loading. 
- use a 3-pass algorithm to load the installed package DAG.

- avoid redundant hashing/comparing on load.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
a8aad95d41 Specs now cache result of "fast" in-memory hash. 
- Hash causes major slowdown for reading/setting up large DBs

- New version caches hash for concrete specs, which includes all specs in
  the install DB
 2016-09-01 11:29:32 -07:00
Todd Gamblin
c46a15b574 Fix dependency bug in database. Fixes #1265, #1320. 2016-09-01 11:25:01 -07:00
Todd Gamblin
4a87d4ab8e Make gh-pages redirect to readthedocs.io 2016-08-31 19:40:22 -07:00
Todd Gamblin
bf8413379f Merge pull request #1593 from eschnett/eschnett/depends_on 
Expand/clarify description of dependency types
 2016-08-31 12:07:11 -07:00
Erik Schnetter
efc570afab Expand/clarify description of dependency types 2016-08-31 14:42:32 -04:00
Todd Gamblin
e3c182a1c4 Merge pull request #1677 from eschnett/eschnett/lzo-hotfix 
Switch lzo download from https to http
 2016-08-31 09:43:16 -07:00
Erik Schnetter
932cd6fa19 Switch lzo download from https to http 
lzo's download server does not present a valid certificate, so that downloads via https are failing. Spack's MD5 checksum still ensure a safe download.

Closes #1675.
 2016-08-31 12:41:04 -04:00
Todd Gamblin
0ff048521b Fix modules.rst doc build warning. 2016-08-30 22:15:13 -07:00
Todd Gamblin
8709e1c1c3 Move docs to readthedocs.io 
- Docs are now visible immediately, and we don't have to push them
  separately.
 2016-08-30 21:19:31 -07:00
Todd Gamblin
9de7e25085 Merge branch 'bugfix/rtd-generation' into develop 2016-08-30 21:13:53 -07:00
Todd Gamblin
3a9388b43a Move sphinx-apidoc into conf.py, too. 2016-08-30 21:02:34 -07:00
Todd Gamblin
32834dd67d fix sys.path in conf.py 2016-08-30 20:50:14 -07:00
Todd Gamblin
05545a2528 test. 2016-08-30 20:49:56 -07:00
Todd Gamblin
41675e5ed6 sorted command index, better colification. 2016-08-30 20:49:56 -07:00
Todd Gamblin
918cb16921 Merge branch 'features/travis' into develop 2016-08-30 20:43:29 -07:00
Todd Gamblin
176a84a828 Don't test sphinx-generated conf.py for flake8 issues. 2016-08-30 20:30:43 -07:00
Todd Gamblin
c470ffe1ac Install graphviz before build. 2016-08-30 20:17:12 -07:00
Todd Gamblin
d9c5191563 Fix issue with path to Spack. 2016-08-30 19:57:33 -07:00