Commit graph

29937 commits

Author SHA1 Message Date
Adam J. Stewart
a84fb716a0
Update the PyTorch ecosystem (#36132)
* py-pytorch-lightning: add v2.0.0

* py-lightning-utilities: add v0.8.0

* Update all PyTorch packages

* Open-CE does not yet have patches for PyTorch 2 on ppc64le
2023-03-17 10:13:44 +01:00
M. Eric Irrgang
a11f06885f
Fix --test behavior for gromacs package. (#35674)
For `spack install --test=all gromacs`
* remove the `test` target from the `check()` call and just use
  the `check` target, in accordance with usual GROMACS test protocol
* build the test binaries explicitly during the build phase

Additional minor updates are necessary. This change
updates the package structure to the newer format with a
separate Builder class so we can override `check()`.
However, note that additional modernization should be
undertaken with care.
2023-03-17 10:11:22 +01:00
Massimiliano Culpo
8517a74f37
ASP-based solver: tweak heuristic, modify compiler encoding (#35989)
This PR does 2 unrelated things:
1. It changes the encoding of the compilers
2. It tweaks the heuristic for the solves in a0d88179074f81d13a3fad629a43d86334e7f982

Both were initially motivated by trying to get a performance gain but, while 2 showed significant speed-ups[^1], 1 instead didn't. I kept it anyhow, since I think the code related to compilers is more consolidated with the new encoding and we might get some performance improvement out of it if we can base our errors on the `node_compiler(Package, CompilerID)` atoms instead of `attrs`.

[^1]: In general the changes in the heuristic brought a ~10% speed-up on the tests I did. I'll post detailed results below.

Add a warning about compilers.yaml that is triggered if there are multiple compilers with the same spec, os and
target (since they can't be selected by users with the spec syntax only).
2023-03-17 00:39:41 -07:00
Alec Scott
34ef01a5c8
libx11: add v1.8.4 (#36075) 2023-03-17 00:04:07 -04:00
Michael Kuhn
86e49a63ce
lmod: add 8.7.20 (#36177) 2023-03-17 02:07:31 +01:00
John W. Parent
d76845e875
libpng package: build with CMake (#35105) 2023-03-16 16:44:53 -07:00
Matthew Thompson
97d6c741b0
Fix for ESMF post_install on macOS (#36087) 2023-03-16 16:32:54 -07:00
Bill Williams
09fd3e8e61
Add explicit configure args to fix instrumentation-time paths (#36089) 2023-03-16 16:30:48 -07:00
Stephen Sachs
e341dac014
[pmix] master branch uses git submodule config/oac (#36104)
* [pmix] master branch uses git submodule config/oac
* Add comment for future versions
2023-03-16 16:04:56 -07:00
Stephen Sachs
38383743e7
pmix, openmpi, and prrte need to use the same configure to find the same deps (#36105)
* [openmpi] 5.0.0.rc10 onwards needs munge

This is the error you will see when munge is missing from `PKG_CONFIG_PATH`:

```
configure:63942: checking for pmix pkg-config cflags
configure:63956: check_package_pkgconfig_run_results=Package munge was not found in the pkg-config search path.
Perhaps you should add the directory containing `munge.pc'
to the PKG_CONFIG_PATH environment variable
Package 'munge', required by 'pmix', not found
configure:63959: $? = 1
configure:63966: pkg-config output: Package munge was not found in the pkg-config search path.
Perhaps you should add the directory containing `munge.pc'
to the PKG_CONFIG_PATH environment variable
Package 'munge', required by 'pmix', not found
configure:63972: result: error
configure:63974: error: An error occurred retrieving pmix cppflags from pkg-config
```

* Use same PKG_CONFIG_PATH defaults for ompi+pmix+prrte

The issue I tried to fix in https://github.com/spack/spack/pull/36105 comes from
different default search paths in different `pkg-config` executables used in
`openmpi` and `pmix` package. As these tools (`openmpi`, `pmix`, and `prrte`)
all use the same mechanisms to detect dependencies, the `pkg-config` environment
they use should also be equal.
2023-03-16 16:02:02 -07:00
Rémi Lacroix
8b94cc4ec2
libaio: Add version 0.3.113 (#36101) 2023-03-16 14:27:50 -07:00
Wouter Deconinck
0a55b44092
autodiff: new version 1.0.0 (#36121)
No more https://0ver.org. No changes to build system since 0.6.12.
2023-03-16 14:20:43 -07:00
Erik Heeren
d97bb895e8
Ospray (#36128)
* ospray: denoiser and GLM variants
* ospray: denoiser defaults to True to preserve previous behaviour
2023-03-16 14:11:03 -07:00
Erik Schnetter
e8482d9e79
openssl: New version 3.1.0 (#36166) 2023-03-16 16:03:06 -04:00
Richard Berger
3f3565e890
LAMMPS: add new versions (#35592)
* LAMMPS: add new stable version 20220623.3
* LAMMPS: add new patch version 20230208
2023-03-16 12:52:48 -07:00
Michael Kuhn
3bb35fbaf6
meson: add 1.0.1 (#35987) 2023-03-16 15:28:09 -04:00
Dom Heinzeller
4572052c63
Modify info print of ESMF_CPP due to permission denied errors in spack on MSU Hercules (#35969)
* Skip info print of ESMF_CPP due to permission denied errors in spack on MSU Hercules
* Better version of patch
2023-03-16 12:22:57 -07:00
Harmen Stoppels
ba00da61e4
reduce spec.json.sig file size (#36157)
Since GPG clear-sign cannot deal with lines longer than 19995 characters
and doesn't even error but simply truncates those linese (don't ask me
why...), we have to be careful not to hit that line limit when reducing
the filesize.

So, instead this PR sets the indent level to 0 and drops the whitespace
after `: `, which still reduces file size by 50% or so.
2023-03-16 19:46:13 +01:00
John W. Parent
825599a510
Windows: target arch based on spec target arch (#35797)
Update packages to check Spec's target rather than the host platform.
2023-03-16 11:31:19 -07:00
renjithravindrankannath
4f6f1b620f
Include rocm-openmp-extras header and omp library (#36142) 2023-03-16 11:21:55 -07:00
Rocco Meli
08dc2d4020
add rdkit for gninavis and remove mpi (#36117) 2023-03-16 11:03:26 -07:00
Pierre Jolivet
6af84c4574
slepc: add HPDDM wrappers (#36118) 2023-03-16 12:32:07 -05:00
Harmen Stoppels
50cc1d12f9
Revert "minify spec.json in buildcache (#36138)" (#36156)
This reverts commit 1a8eefe09b.
2023-03-16 10:30:52 +01:00
Alec Scott
c29168eff1
openfst: add v1.8.2 (#36143) 2023-03-16 09:23:21 +01:00
Alec Scott
5ed1efab40
openal-soft: add v1.23.0 (#36144) 2023-03-16 09:23:05 +01:00
Alec Scott
887d70410d
octave: add v8.1.0 (#36145) 2023-03-16 09:22:50 +01:00
Alec Scott
a9936141ee
nginx: add v1.23.3 (#36146) 2023-03-16 09:22:31 +01:00
Alec Scott
5744fc3637
netdata: add v1.38.1 (#36147) 2023-03-16 09:21:54 +01:00
Alec Scott
b13c201f46
mpdecimal: add v2.5.1 (#36149) 2023-03-16 09:20:15 +01:00
Alec Scott
e2ab46251b
mpc: add v1.3.1 (#36150) 2023-03-16 09:19:56 +01:00
Alec Scott
193c927bd2
mosh: add v1.4.0 (#36151) 2023-03-16 09:18:20 +01:00
Alec Scott
9d195da8ee
mkfontscale: add v1.2.2 (#36152) 2023-03-16 09:18:04 +01:00
Alec Scott
132b89178e
erlang: add v25.3 (#36153) 2023-03-16 09:17:47 +01:00
Adam J. Stewart
6491e08f5d
qt-base: add qmake attribute (#36114) 2023-03-15 20:53:59 -05:00
kwryankrattiger
bb73dfc02e
Hotfix: CI: Add CI target for gpu-test stack (#36136) 2023-03-15 21:13:02 -04:00
Howard Pritchard
64fa902ba6
UCX: make version support level more realistic (#36127)
Per feedback from the UCX community, we rarely do update
releases to anything but the current and one previous main
release stream.

Update comments in the UCX spack file to reflect this.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-03-15 17:09:41 -04:00
Harmen Stoppels
1a8eefe09b
minify spec.json in buildcache (#36138)
saves about 50% of data, which is significant
for hundreds of thousands of spec.json files
in our buildcaches.
2023-03-15 16:54:03 -04:00
Alec Scott
85d51bfd9a
extrae: add v4.0.3 (#36059) 2023-03-15 15:24:38 -04:00
Alec Scott
e5d78e3780
libpipeline: add v1.5.7 (#36068) 2023-03-15 15:19:54 -04:00
Annop Wongwathanarat
99893a6475
wrf: fix patches for aarch64 config (#35984) 2023-03-15 12:40:00 +01:00
Annop Wongwathanarat
5f8f89b9c9
py-numpy: enable linking with armpl-gcc and acfl for BLAS and LAPACK (#35417)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-15 12:38:14 +01:00
Mosè Giordano
028535030c
julia: Some improvements to the package (#36054) 2023-03-15 11:10:50 +01:00
Robert Blake
0e295afb1c
cardioid: fix homepage (#36099) 2023-03-15 09:19:34 +01:00
Mark W. Krentel
e58c84e63e
hpctoolkit: add branch 2023.03.stable (#36096) 2023-03-15 09:18:18 +01:00
Howard Pritchard
37904c3342
UCX: add 1.14.0 (#36098)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-03-15 09:17:55 +01:00
Adam J. Stewart
9f116c7bb1
GDAL: add v3.6.3 (#36097) 2023-03-15 09:16:48 +01:00
Shahzeb Siddiqui
b5f3b5bf78
Remove leftover command from documentation (#36116)
The command refers to dotkit files, which are not supported since a long time.
2023-03-14 20:48:28 -04:00
Erik Heeren
93887edba8
py-pyshacl: patch dependency typo (#36084)
* py-pyshacl: patch dependency typo

* py-pyshacl: satisfy flake8

* Update var/spack/repos/builtin/packages/py-pyshacl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-14 20:18:27 -04:00
John W. Parent
cd42fc5cc8
Libogg and libtheora: build on windows (#35099)
Adds builders appropriate for building these packages on Windows.
It is intended that builds on other platforms are unaffected (e.g.
they build with Autotools as before on Linux).
2023-03-14 16:46:49 -07:00
Sajid Ali
9a1254063a
Fix HDF5+mpi~fortran (#35400)
* HDF5+mpi~fortran
* fix style
2023-03-14 19:04:34 -04:00