2295 commits

Author	SHA1	Message	Date
Todd Gamblin	b3789a4693	Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas ... Pkg/hypre trilinos blas	2016-07-18 03:06:37 -07:00
Todd Gamblin	cddaba8add	flake8 fixes. ... - package.py - spec.py - test/architecture.py	2016-07-18 02:34:24 -07:00
Todd Gamblin	192369dd2b	Fix #1265: Errors in spack reindex ... - Consolidated code to read spec.yaml and database index.yaml into one method (`read_yaml_dep_specs()`) in spec.py. - Code understands old hash format, tuple format, and dicts for dep specs, for backward compatibility. - Spec YAML now uses a dict with keys to represent dep specs (this is more future-proof). - Dep specs no longer contain !!py-tuple entries in YAML (only lists properly YAML-ize) - bump database version.	2016-07-18 01:19:07 -07:00
Todd Gamblin	73f10c9363	Fix broken spack info command after build dep merge. ... - Added a method to get dependencies of particular types from Package - Fixed info command.	2016-07-18 01:19:07 -07:00
Todd Gamblin	cdc2ebee90	Better error messages for spack reindex.	2016-07-18 01:14:47 -07:00
alalazo	6c00a13ed5	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases ... Conflicts: var/spack/repos/builtin/packages/swiftsim/package.py	2016-07-18 08:49:24 +02:00
Todd Gamblin	117743863e	Merge pull request #1252 from hartzell/patch-5 ... Fix format of explanation of an example & question	2016-07-17 21:20:02 -07:00
Todd Gamblin	0e8bf79fa4	Merge pull request #1240 from epfl-scitas/truncated_documentation ... doc : fixes #1239	2016-07-17 20:59:36 -07:00
alalazo	dc671ad037	docs : substituted None with empty cell	2016-07-17 22:17:52 +02:00
Denis Davydov	9ea4f80f15	flake8 fixes	2016-07-16 07:58:51 +02:00
Denis Davydov	992250ddea	add to_lib_name() to get library name from a path	2016-07-16 07:24:05 +02:00
Michael Kuhn	d61190c3ff	Explicitly request zmpi in module blacklist test.	2016-07-16 00:48:04 +02:00
becker33	63101e9914	Merge pull request #1261 from adamjstewart/features/create-deptype ... Automatically add deptype to newly created packages	2016-07-15 15:10:10 -07:00
Adam J. Stewart	8c1cc44522	Automatically add deptype to newly created packages	2016-07-15 16:43:25 -05:00
becker33	e822257565	Merge pull request #1251 from hartzell/patch-4 ... Minor typo fix	2016-07-15 13:51:02 -07:00
alalazo	833b0ac282	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases ... Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py	2016-07-15 11:03:02 +02:00
alalazo	893a5565fe	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases ... Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py	2016-07-15 11:02:55 +02:00
alalazo	1f3cb2b93c	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh ... Conflicts: lib/spack/spack/cmd/module.py	2016-07-15 10:37:27 +02:00
Ben Boeckel	5d152edcaf	spec: assign namespaces to the full dependency DAG	2016-07-14 16:33:48 -04:00
Ben Boeckel	faa3d43d9c	package: mention the package that is no concrete	2016-07-14 16:33:38 -04:00
Ben Boeckel	45c675fe7f	spack: introduce dependency types ... deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.	2016-07-14 16:21:46 -04:00
Ben Boeckel	bae97d17d0	test: use file:// url for git repos	2016-07-14 16:21:45 -04:00
Ben Boeckel	6d2ec9baf7	test/stage: use os.path.realpath on the test paths ... When var/spack/stage is a symlink, the tests fail since realpath is used on the resulting path, but not the original path, so the string compare fails. Smarter path testing might be a better option.	2016-07-14 16:21:45 -04:00
Ben Boeckel	b4682c8ca3	directory_layout: fix error path when specs conflict	2016-07-14 16:21:45 -04:00
Ben Boeckel	e275b567eb	typos: fix some typos	2016-07-14 16:21:45 -04:00
George Hartzell	3e718920d1	Remove extraneous letter 'p' ... It got in there by mistake, now it's gone.	2016-07-14 09:40:47 -07:00
George Hartzell	3051c3d71d	Fix format of explanation of an example & question ... This list was not formatted correctly on [the ReadTheDocs site](http://software.llnl.gov/spack/basic_usage.html#specs-dependencies). I'm not a .rst expert, but I think that it was improperly indented. The example includes an `arch=...` string but *arch* is not listed in the valid compiler flag specifiers or architecture specifiers. Should it be, or is it considered an "optional variant specifier?	2016-07-14 08:31:07 -07:00
George Hartzell	e052aaf44d	Minor typo fix ... the packages that depends on => the packages that depend on	2016-07-14 08:19:32 -07:00
alalazo	b8fccb5f61	CMakePackage : added hook for roo CmakeLists.txt, removed duplicated code from build_environment.py	2016-07-14 12:04:24 +02:00
alalazo	1ecea4c2f1	log : refactored acquire and release semantic to meet the context manager protocol	2016-07-14 09:34:01 +02:00
alalazo	00b8e0b567	package.py : joined and simplified try/except blocks in do_install	2016-07-14 09:11:44 +02:00
Michael Kuhn	5ffc50732b	flake8 fixes	2016-07-13 23:05:08 +02:00
alalazo	9d66b85492	log : changed semantic for start / join (now it's explicit)	2016-07-13 22:51:12 +02:00
alalazo	90b131260b	log : changed semantic for start / join (now it's explicit)	2016-07-13 22:50:39 +02:00
alalazo	7cedd620f1	package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples	2016-07-13 17:36:06 +02:00
alalazo	0e2afedb7f	doc : fixes #1239	2016-07-13 12:43:48 +02:00
alalazo	ad16830f71	log : added timeout to avoid deadlocks on daemon join	2016-07-13 11:20:23 +02:00
alalazo	468a6431f9	package.py : workaround for a known bug that was not fixed in python 2.6 ... https://bugs.python.org/issue1515	2016-07-13 11:08:19 +02:00
alalazo	5cc59507f7	package.py : hdf5 and lzo have examples of run_tests	2016-07-13 09:27:09 +02:00
alalazo	97c2224cd6	package.py : extra arguments, fixed inheritance issue ... - added attribute to hold extra arguments in PackageBase instances - fixed registration from within packages - examples : hdf5, lzo	2016-07-13 09:27:09 +02:00
alalazo	813cb032c4	package.py : updated logic to log.py rework ... Conflicts: lib/spack/spack/package.py	2016-07-13 09:27:09 +02:00
alalazo	513cdd580e	do_install : can stop at an arbitrary phase ... Now uses a StopIteration exception as a signal	2016-07-13 09:27:09 +02:00
alalazo	9af964a6d6	log_output : moved from os.fork to multiprocessing.Process	2016-07-13 09:27:09 +02:00
alalazo	440e71ff13	build_environment : moved from os.fork to multiprocessing.Process	2016-07-13 09:27:09 +02:00
alalazo	857d7bfe0f	do_install : can stop at an arbitrary phase ... The mechanism would be simpler if we could leverage exceptions to raise signals. Unfortunately forking does not permit to do so.	2016-07-13 09:27:09 +02:00
alalazo	a43c63f149	package : added EditableMakefile ... Modifications : - added EditableMakefile to PackageBase subclasses - astyle modified as an example - preliminary hook to stop at a certain phase of install	2016-07-13 09:27:09 +02:00
alalazo	8f75d34331	package : added a stub for AutotoolsPackage, examples in szip and swiftsim	2016-07-13 09:27:09 +02:00
alalazo	8ed028e2d6	package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases	2016-07-13 09:27:09 +02:00
alalazo	a36f3764af	package : added hooks for generic phases	2016-07-13 09:27:09 +02:00
Todd Gamblin	27aa265abd	Merge pull request #1211 from hartzell/patch-3 ... Typo: verison -> version	2016-07-12 13:53:52 -07:00
Michael Kuhn	b7d9b58cc5	Fix preferred providers.	2016-07-12 19:57:08 +02:00
Todd Gamblin	283d621b6e	Add documentation for fetching submodules.	2016-07-11 13:27:37 -07:00
Todd Gamblin	86b1b28906	Add submodules option for git fetching.	2016-07-11 13:27:35 -07:00
alalazo	5f861e075c	Merged develop into branch	2016-07-11 20:57:55 +02:00
Todd Gamblin	7f6541ef02	Merge pull request #1190 from davydden/feature/version_dev ... add special treatment of @develop version	2016-07-11 11:31:54 -07:00
Denis Davydov	306e601d4e	document special treatment of development version	2016-07-11 19:50:33 +02:00
George Hartzell	fbaff33f3f	Typo: verison -> version	2016-07-11 09:44:20 -07:00
George Hartzell	1682257b35	Typo: verison -> version	2016-07-11 09:42:49 -07:00
Denis Davydov	b29d5e6032	add special treatment of develop version	2016-07-10 14:21:52 +02:00
Todd Gamblin	b0f4052bd8	Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes ... --run-tests install argument and petsc fixes	2016-07-09 12:10:16 -07:00
Todd Gamblin	c086ccdab6	Merge pull request #1200 from glennpj/lowpackname ... Have ``spack create`` default to lower case name for package	2016-07-08 13:29:52 -07:00
Glenn Johnson	33d0660abc	Have `spack create` default to lower case name ... This will create package directories with lower case names when using `spack create`. The documentation was modified to reflect this.	2016-07-08 15:11:37 -05:00
George Hartzell	1b9e8a0e65	Fix typo ... Comamnds -> Commands	2016-07-08 11:01:08 -07:00
Todd Gamblin	b9148b1751	Merge pull request #1125 from NERSC/docs/cray ... Update documentation for use on Cray	2016-07-06 15:06:20 -07:00
Gregory Becker	403a55afb2	Minor bug fix	2016-07-06 14:54:25 -07:00
Gregory Becker	663b30b3e8	Update target autodetection for linux platform	2016-07-06 14:54:22 -07:00
Denis Davydov	081918d71a	add --run-tests argument for install()	2016-07-06 22:45:30 +02:00
Todd Gamblin	03fdb2058a	Merge pull request #1176 from epfl-scitas/features/version_minor_improvements ... spack.Version : like a duck!	2016-07-06 09:01:19 -07:00
alalazo	9b926a480f	qa : flake8 issues	2016-07-06 17:03:32 +02:00
alalazo	780a57367d	version : modified __getitem__ to return either an item or a Version instance + unit tests	2016-07-06 17:00:48 +02:00
alalazo	32e086f44a	version : modified __repr__ to return a string representation of the object + unit tests	2016-07-06 15:24:10 +02:00
William Killian	1f64f08cb3	(bugfix) fixed typo of spec --> raw_spec	2016-07-05 13:32:37 -07:00
Todd Gamblin	d687e332ad	Fix compile bugs for gcc on Mac OS X with macports. ... - add macports to things that are cleaned out of the environment. - linker incompatibilities cause issues with packages like OpenSSL. - also clean up NOQA stuff in OpenSSL	2016-07-04 22:59:02 -07:00
Todd Gamblin	690937f953	Add --dirty option to spack install. ... - Allow install to be run without cleaning the environment.	2016-07-04 22:58:01 -07:00
Todd Gamblin	6bac1598f6	Merge branch 'fix-archive' of https://github.com/mwilliammyers/spack into mwilliammyers-fix-archive	2016-07-04 21:35:33 -07:00
Todd Gamblin	890df7153a	Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage	2016-07-04 00:27:32 -07:00
alalazo	6d988dde8d	qa : fixed flake8 issues	2016-07-02 12:54:36 +02:00
alalazo	3100c5948a	module : added unit tests	2016-07-02 12:14:30 +02:00
Glenn Johnson	31e9ded768	Remove more variables from build environment ... Remove the LIBRARY_PATH and CPATH environment variables before building a package.	2016-07-01 20:59:14 -05:00
alalazo	d10fceaacc	spack commands : refactoring of cli arguments and common utiities. Implemented suggestions on spack module loads ... - Common cli arguments now are in their own module - Moved utilities that can be reused by different commands into spack.cmd.__init__.py - Modifications to `spack module loads`	2016-07-01 23:06:07 +02:00
alalazo	f0f7b23c8a	module : added rm subcommand, encapsulated logic for constraints in argarse.Action subclass	2016-07-01 14:27:55 +02:00
alalazo	fe4ef286f2	module : added the command 'load-list'	2016-07-01 12:38:04 +02:00
Mario Melara	56adb5d9a5	Change arch spec and fix typo ... Changed old arch specs to new arch specs. Changed intallation to installation	2016-06-30 17:03:07 -07:00
Mario Melara	16a4c49f98	Remove Cray examples of config files ... Removed examples of Cray config files and added them under Spack on Cray. Any users of Cray can just look at the Spack on Cray section to get an idea of what's used. If they want more information they can click links to the sections.	2016-06-30 17:01:18 -07:00
Mario Melara	d784d561fc	Add more documentation fix arch spec ... Added more documentation for Spack on Cray. Also fixed the architecture spec to be linux-debian7-x86_64 since it was reversed in the previous commit.	2016-06-30 16:59:36 -07:00
Massimiliano Culpo	6793a54748	--prefix : defaults to empty string	2016-06-30 23:18:32 +02:00
Massimiliano Culpo	ba1ada5424	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh_reworking ... Conflicts: lib/spack/spack/cmd/module.py	2016-06-30 22:19:46 +02:00
alalazo	a770151359	module : minor improvement to output formatting	2016-06-30 16:49:24 +02:00
Elizabeth Fischer	6327877a6f	PEP-8	2016-06-30 09:19:57 -04:00
Elizabeth Fischer	50ac98bc04	Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage ... # Conflicts: # lib/spack/docs/packaging_guide.rst # lib/spack/spack/package.py Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently). Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`. This got added back in from develop.	2016-06-30 09:13:24 -04:00
alalazo	ba87937fff	module : added detection of file name clashes	2016-06-30 13:44:49 +02:00
alalazo	1b7eedbb7d	modules.yaml : added hash_length as a new keyword ... config : - added `hash_length` under the modules section EnvModules : - take into consideration hash_length when constructing `file_name` - added logic to warn and skip module file writing in case of file name clash	2016-06-30 12:56:47 +02:00
Todd Gamblin	0e422dec8c	Merge pull request #1141 from adamjstewart/fixes/license_docs ... Fix missing code blocks in licensed software documentation	2016-06-30 02:22:38 -07:00
Todd Gamblin	bc2fa76588	Merge pull request #1146 from scheibelp/features/doc-caching ... added documentation for automatic caching of resources fetched during installs	2016-06-30 02:13:16 -07:00
Todd Gamblin	30d083c6b7	Merge branch 'efischer/160401-RecursiveModules' of https://github.com/citibeth/spack into citibeth-efischer/160401-RecursiveModules	2016-06-30 02:12:00 -07:00
Peter Scheibel	cfd380d514	added documentation for automatic caching of resources fetched during installs	2016-06-29 18:23:40 -07:00
Ben Boeckel	5f720f9b7c	flake8: appease the style checker	2016-06-29 14:49:58 -04:00
Ben Boeckel	e3e94f0ac9	bootstrap: name the current branch the same as the remote	2016-06-29 14:49:19 -04:00
Ben Boeckel	89bf5f4045	bootstrap: allow using alternate remotes ... If you want to bootstrap from a fork, the `--remote` option may be used to select it. Also limit the branches to 'develop' and 'master' if the remote is 'origin' since those are the actual integration branches used (other branches on 'origin' are just PR branches).	2016-06-29 14:49:19 -04:00
Ben Boeckel	7ec191ce0b	bootstrap: use the currently checked out branch ... The `master` branch is not really where Spack development happens, so default to it, but use the user's current branch if it's there.	2016-06-29 14:49:19 -04:00
Ben Boeckel	6f69c01915	bootstrap: fall back to the default upstream URL ... Fixes #352.	2016-06-29 14:49:19 -04:00
Adam J. Stewart	06de8c56af	Fix missing code blocks in licensed software documentation	2016-06-29 12:35:38 -05:00
Todd Gamblin	eb388306fd	Merge pull request #1112 from adamjstewart/features/dependencies ... Make spack create automatically add dependencies for build system	2016-06-29 07:57:33 -07:00
Todd Gamblin	c996632113	Add spack purge --cache to purge local archive cache.	2016-06-29 01:41:55 -07:00
Todd Gamblin	bc1320d83a	Merge branch 'features/cache-archives' of https://github.com/scheibelp/spack into scheibelp-features/cache-archives	2016-06-29 00:57:26 -07:00
alalazo	b71d430af6	module : can regenerate single module files, homogenized cli options ... spack module : - refresh accepts a constraint - find and refresh share common cli options - ask for confirmation before refreshing - deleting the module file tree is now optional	2016-06-28 19:28:18 +02:00
mwilliammyers	0384794912	Fix #1019 - cannot create mirror for git spec	2016-06-27 16:00:38 -06:00
Mario Melara	26325fe812	Add missing link to external packages ... Adding missing _sec-external_packages to link with external packages page	2016-06-27 14:35:56 -07:00
Mario Melara	7fb45e4bfd	Update documentation for use on Cray ... Updating how to use compilers.yaml on Cray as well as setting up external packages. Also includes what needs to be set up for usage on Cray and explains what needs to be done to get Spack properly working. Also explain the architecture spec and what it does.	2016-06-27 13:52:48 -07:00
Todd Gamblin	3ea9d1e665	Merge pull request #1122 from LLNL/bugfix/newarch-sys_type ... Bugfix/newarch sys type	2016-06-27 10:07:03 -07:00
Adam J. Stewart	798dabc8f2	Forgot the unknown key/value pair	2016-06-27 09:01:53 -05:00
Todd Gamblin	0185226042	Merge pull request #1121 from LLNL/bugfix/module-directory-pollution ... Make MockPackagesTest use a different module location.	2016-06-27 02:25:32 -07:00
Todd Gamblin	99c3ed56fa	Add new sys_type method that prints out the *full* arch descriptor.	2016-06-27 02:19:26 -07:00
Todd Gamblin	305d5698df	Rename spack.architecture.sys_type() to spack.architecture.platform()	2016-06-27 02:19:08 -07:00
Todd Gamblin	a15aee5d8e	Make MockPackagesTest use a different module location. ... - ensures anything tests create is blown away.	2016-06-27 01:22:03 -07:00
Todd Gamblin	b4c36164b5	Fixes #760: spack test leaves builtin.mock packages in DB ... - install_layout was redirected by the install test, but not the DB. - redirect the DB now, as well.	2016-06-27 00:55:16 -07:00
Todd Gamblin	73213ac59d	Merge pull request #984 from epfl-scitas/module_file_explicit_load ... module files : explicit load and mnemonic suffixes	2016-06-26 23:33:48 -07:00
Todd Gamblin	19b69ce3a5	Merge pull request #1097 from citibeth/efischer/160622-DBErrors ... Improved Spack database errors to help users fix them.	2016-06-26 22:45:44 -07:00
Todd Gamblin	ece72e5337	Merge pull request #1030 from opoplawski/external ... Remove last two remaining from external imports	2016-06-26 22:41:58 -07:00
Todd Gamblin	8f28df1d14	Merge pull request #1094 from epfl-scitas/documentation/remove_packages_yaml_inconsistencies ... packages.yaml : removed references to a never implemented feature	2016-06-26 22:37:43 -07:00
Todd Gamblin	30993357d7	Merge pull request #1105 from adamjstewart/fixes/filter_file ... Fix backup logic in filter_file	2016-06-26 22:33:09 -07:00
Adam J. Stewart	ea88d9cfe9	Make spack create automatically add dependencies for build system	2016-06-24 16:43:31 -05:00
Todd Gamblin	055f7f4ab6	Add package_dir method to package.py.	2016-06-24 12:33:53 -07:00
Adam J. Stewart	71a297f121	Fix backup logic in filter_file	2016-06-23 16:44:41 -05:00
Todd Gamblin	27e9bc6d02	Make sbang handle lua ... - use --! instead of #! for patched lua scripts.	2016-06-23 00:03:23 -07:00
Elizabeth Fischer	8f846d507d	Added --prefix to module command.	2016-06-22 15:36:04 -04:00
Elizabeth Fischer	10810482bc	Update database.py ... PEP8	2016-06-22 14:03:32 -04:00
Elizabeth Fischer	ffe9e77e36	Improved Spack database errors to help users fix them.	2016-06-22 12:11:09 -04:00
Robert.French	ff3e56cf9a	Import which from spack.util.executable; Fixes #1095	2016-06-22 15:25:32 +00:00
alalazo	f29b55957a	documentation : removed references to never implemented features	2016-06-22 17:08:02 +02:00
Todd Gamblin	58cff1290d	Make environment test less sensitive to user config files.	2016-06-21 00:19:28 -07:00
Todd Gamblin	0521b9bb32	Fix merge error.	2016-06-21 00:08:12 -07:00
Todd Gamblin	f18e1a9371	Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera	2016-06-20 23:53:48 -07:00
Todd Gamblin	3f90fee614	Merge pull request #1085 from NERSC/bugfix/compiler_find ... Bugfix/compiler find and gfortran fix.	2016-06-20 23:46:13 -07:00
Todd Gamblin	70a25c4587	Change --insensitive to --sensitive in spack list	2016-06-20 17:17:25 -07:00
Todd Gamblin	cbd5a0a6e3	Merge branch 'list-ext' of https://github.com/trws/spack into trws-list-ext	2016-06-20 17:13:32 -07:00
Todd Gamblin	db81a74d66	Merge pull request #939 from davydden/docs/blas_lapack ... document blas and lapack usage in packages	2016-06-20 17:11:09 -07:00
Todd Gamblin	a3431c5a73	Merge pull request #1047 from epfl-scitas/source_diffs_in_environment_modifications ... feature : construct environment modifications sourcing files	2016-06-20 16:56:30 -07:00
Mario Melara	d515877d91	Add init_config args in compilers/__init__	2016-06-20 16:20:52 -07:00
Mario Melara	4c4f3e9747	Add init_config to compiler_find method	2016-06-20 16:20:33 -07:00
alalazo	5aa3131385	qa : fixed flake8 issues	2016-06-20 21:11:33 +02:00
alalazo	b86e3047f3	openmpi : revert part of #1079 (OpenMPI can be built without fortran) ... Building OpenMPI without fortran is possible, and was already handled. Raising an install error we effectively renounce at clang+OpenMPI. build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found	2016-06-20 20:46:11 +02:00
Tom Scogland	45482187b4	one more typo issue	2016-06-20 11:42:35 -07:00
Tom Scogland	f6aa864bc4	adding quotes to make sure the glob is interpreted correctly	2016-06-20 11:41:36 -07:00
Tom Scogland	ac728d3e60	fixing capitol->capital typos	2016-06-20 11:38:39 -07:00
Tom Scogland	6180e6c047	automatic case-insensitive like smartsearch, docs ... New documentation for the new options, also case insensitive by default unless the user includes an upper-case character in their pattern.	2016-06-20 11:33:56 -07:00
Mario Melara	6fb7b0fcf7	Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find ... Forgot to pull branch changes before	2016-06-20 10:59:28 -07:00
Mario Melara	88888f5ba0	Got rid of unnecessary module arg	2016-06-20 10:58:20 -07:00
Mario Melara	1303b5a6a9	Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config	2016-06-20 10:57:58 -07:00
Mario Melara	fe30113502	Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work	2016-06-20 10:57:10 -07:00
Tom Scogland	0377f3580b	switching argument naming	2016-06-20 10:53:19 -07:00
Adam J. Stewart	aa86488fd9	Flake8	2016-06-20 12:47:17 -05:00
Todd Gamblin	42ff1aaa75	Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup ... do not create shebang.bak file	2016-06-20 10:45:42 -07:00
Todd Gamblin	c09111bbef	Merge pull request #1053 from davydden/pkg/dealii_suite_update ... update Petsc, Slepc, Trilinos, Superlu-dist and deal.II	2016-06-20 10:32:52 -07:00
Adam J. Stewart	be407f531e	Move around extension logic	2016-06-20 12:24:45 -05:00
Adam J. Stewart	28b2e36230	Add ctest executable	2016-06-20 12:24:45 -05:00
Adam J. Stewart	afff40e584	Flake8 fix for R templates	2016-06-20 12:24:45 -05:00
Adam J. Stewart	5dfc2052bd	Flake8 change	2016-06-20 12:24:45 -05:00
Adam J. Stewart	98d03c74e1	Add support for less common compression schemes	2016-06-20 12:24:45 -05:00
Adam J. Stewart	5a55bb3f8d	Modify R installation template	2016-06-20 12:24:45 -05:00
Adam J. Stewart	79fae306f6	Add extensions for Python/R and more configurable install	2016-06-20 12:24:45 -05:00
Adam J. Stewart	9500f2718b	More Flake8	2016-06-20 12:24:45 -05:00
Adam J. Stewart	a21e845ce7	Flake8	2016-06-20 12:24:45 -05:00
Adam J. Stewart	2220784eda	Add scons support, .zip support, and Cantera package	2016-06-20 12:24:45 -05:00
Peter Scheibel	1dc62e8a19	Merge branch 'develop' into features/cache-archives	2016-06-20 10:16:02 -07:00
Todd Gamblin	ce105e9bbe	Merge branch 'bugfix/compiler_find' into develop	2016-06-20 09:34:25 -07:00
Todd Gamblin	84e21703bd	Test no longer assumes compilers exist in /usr. ... - makes a fake gcc instead, and tests that.	2016-06-20 09:28:39 -07:00
Mario Melara	64c83638ff	Adding test to list of test_names	2016-06-18 11:11:46 -07:00
Mario Melara	15e6b88a8b	Adding new tests for compiler command for spack's test suite	2016-06-18 10:51:38 -07:00
Mario Melara	36275f8e6e	More clean up of init_config, also no need for a different find_compilers function.	2016-06-18 10:50:55 -07:00
Mario Melara	ccb62b4620	Getting rid of no longer used init_config arg	2016-06-18 10:49:39 -07:00
Todd Gamblin	f9efb746d7	Merge pull request #1032 from eschnett/eschnett/cc-quotes ... Add quotes around file name	2016-06-18 08:57:18 -07:00
alalazo	9e0c20c794	environment : filter the current environment ... Previously only the environment obtained after sourcing the file was filtered. This caused the appeareance of spurious unset commands in the list.	2016-06-18 13:39:08 +02:00
alalazo	a17d1efe7c	Merge branch 'develop' of https://github.com/LLNL/spack into features/source_diffs_in_environment_modifications ... Conflicts: lib/spack/spack/test/environment.py	2016-06-18 13:31:29 +02:00
alalazo	670669ef80	qa : fixed flake8 issues	2016-06-18 13:10:35 +02:00
alalazo	a33077b77f	unit tests : fixed test_alter_environment	2016-06-18 13:07:14 +02:00
alalazo	51cf847647	Merge branch 'develop' of https://github.com/LLNL/spack into features/module_file_explicit_load ... Conflicts: lib/spack/spack/test/modules.py	2016-06-18 13:06:37 +02:00
Mario Melara	8af1c5fc8f	Merge remote-tracking branch 'upstream/develop' into develop ... "Updating NERSC branch"	2016-06-18 00:52:06 -07:00
Mario Melara	c703bfb54d	Got rid of init_config flag since we don't need it. Instead we update the cache config if there are any changes	2016-06-18 00:48:08 -07:00
Todd Gamblin	4569df025e	Merge pull request #1060 from mathstuf/no-break-long-words ... tty: do not break long words	2016-06-17 14:51:26 -07:00
Todd Gamblin	d7f48e1ff0	Merge pull request #1061 from mathstuf/reindex-preserve-explicit ... reindex: preserve 'explicit' flags	2016-06-17 14:29:47 -07:00
Todd Gamblin	0bbbfc2ef7	Merge pull request #946 from LLNL/features/intel2 ... Intel software packages and license enhancements	2016-06-17 14:28:39 -07:00
Tom Scogland	8770f2a0ea	fixing last flake8 issue	2016-06-17 13:42:27 -07:00
Tom Scogland	0743ef4d0b	fixing flake8 issues	2016-06-17 13:32:28 -07:00
Tom Scogland	a4ac99877a	cmd/list: adding description search and glob by default	2016-06-17 12:00:35 -07:00
Mario Melara	fe5eec5230	'find and 'add' are options for adding compilers via command line	2016-06-17 09:16:03 -07:00
Mario Melara	df84fe0b58	Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter.	2016-06-16 18:10:38 -07:00
Todd Gamblin	005827ab23	Replace 2.6-incompatible skipIf with a conditional. ... - skipIf doesn't work with Python 2.6.	2016-06-16 12:12:29 -07:00
Todd Gamblin	f60ae61652	remove dead code, cleanup.	2016-06-16 10:44:15 -07:00
Todd Gamblin	8867adf942	simplify instance check.	2016-06-16 10:43:36 -07:00
Todd Gamblin	c7dfa1699a	rename Mac OS X to macos	2016-06-16 10:43:12 -07:00
Mario Melara	6b03770602	Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not.	2016-06-16 09:44:37 -07:00
Todd Gamblin	88b73bacdb	Merge branch 'features/newarch' into develop ... Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py	2016-06-16 03:03:26 -07:00
Todd Gamblin	17b868381f	Fixes #460: Do not show variants by default in spack find. ... This does two things: 1. By default `spack find` no longer shows variants. You have to supply `-v` to get that 2. This improves the `colify` implementation so that it no longer pads the rightmost column. This avoids the issue where if one spec was too long in the output, *all* specs would have space padding added to that width, and it would look like the output of `spack find` was double spaced. This no longer happens -- the one bad line wraps around and the other lines are now single-spaced when you use `-v` with boost.	2016-06-16 02:55:33 -07:00
Todd Gamblin	88b671f8b1	Just call old os "unknown"	2016-06-16 02:06:19 -07:00
Todd Gamblin	f3d6818d5c	be more tolerant when parsing new specs.	2016-06-16 00:55:39 -07:00
Todd Gamblin	c90cc465f5	Add __contains__ to arch to satsify old packages.	2016-06-16 00:54:59 -07:00
Gregory L. Lee	d4df4375d5	removed unused import per flake8 report	2016-06-15 20:32:08 -07:00
Gregory L. Lee	1724ff5658	do not create shebang.bak file	2016-06-15 20:21:02 -07:00
Gregory Becker	3fcd54203c	two minor fixes	2016-06-15 16:44:38 -07:00
Gregory Becker	2fc9ac4036	Two minor fixes	2016-06-15 16:39:39 -07:00
Ben Boeckel	716f12dd58	reindex: preserve 'explicit' flags ... Look up in the old database whether the spec was explicit or not and preserve it into the new database. Fixes #1050.	2016-06-15 12:48:40 -04:00
Denis Davydov	3d3a26cd9a	flake8 fixes for filesystem.py	2016-06-15 18:31:10 +02:00
Ben Boeckel	36decbfa69	tty: do not break long words ... These "words" tend to be file paths which are best left unbroken. Fixes #1057.	2016-06-15 12:22:35 -04:00
Denis Davydov	a860a3d614	superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version	2016-06-15 18:21:13 +02:00
Massimiliano Culpo	30c9d976f6	environment : added more logic to treat append and prepend path	2016-06-12 18:54:56 +02:00
alalazo	5300ffac7f	qa : fixed flak8 checks	2016-06-12 15:11:26 +02:00
alalazo	a6681f2d7f	environment modules : added function to construct them from source files	2016-06-12 15:06:17 +02:00
alalazo	3737169450	qa : fixed style and a bug reported by flake8 ... lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306 Flake8 found errors.	2016-06-11 12:57:46 +02:00
alalazo	eb9b00b210	versions : added unit tests for the new properties	2016-06-11 12:44:21 +02:00
Gregory Becker	0fea167f97	I made a hash of that minor merge ... Merge commit '4eeb' into features/newarch	2016-06-10 16:28:09 -07:00
Gregory Becker	992bcac794	changed compiler yaml format	2016-06-10 16:26:02 -07:00
Erik Schnetter	2a4d440003	Add quotes around file name ... $input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.	2016-06-08 19:14:01 -04:00
Orion Poplawski	7ce08c4216	Remove last two remaining from external imports	2016-06-08 13:51:31 -06:00
Peter Scheibel	3b71d78f3c	rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors)	2016-06-08 09:57:56 -07:00
alalazo	564483936f	qa : fixed flake8 issues	2016-06-08 16:33:49 +02:00
alalazo	f4a39457de	lmod : updated package and dependencies	2016-06-08 15:35:15 +02:00
Peter Scheibel	a2754894ea	(1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit)	2016-06-07 16:26:54 -07:00
Mario Melara	5715799d4e	Added to_dict back into operating system	2016-06-07 14:15:28 -07:00
Mario Melara	4925be0bc4	Load external modules	2016-06-07 13:22:47 -07:00
Peter Scheibel	de1ec4be8b	change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version.	2016-06-06 12:26:13 -07:00
Mario Melara	196737c217	Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters	2016-06-06 10:29:19 -07:00
Mario Melara	835982faed	Changed OS name to CNL10 so that we properly find the compilers for the test platform	2016-06-06 09:08:59 -07:00
Mario Melara	864191b6ed	Got rid of unnecessary global keyword	2016-06-06 09:06:58 -07:00
Mario Melara	5b023bb0a1	Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system	2016-06-06 09:05:14 -07:00
Mario Melara	c7b48f6fef	Passing full arch for proper compiler spec so that we can use the platform to get the operating system	2016-06-06 09:04:24 -07:00
Mario Melara	f751d68177	Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding.	2016-06-06 09:03:32 -07:00
Tom Scogland	30e8e77fb6	Merge pull request #869 from brettviren/feature/views ... Feature/views	2016-06-05 11:31:48 -07:00
alalazo	bdd874eb7f	autopep8	2016-06-04 18:09:28 +02:00
alalazo	02cadb882b	unit test : suffixes	2016-06-04 18:09:06 +02:00
alalazo	669caefccb	unit test : wrong naming scheme in conflict	2016-06-04 18:00:18 +02:00
alalazo	d43cfefa43	autopep8	2016-06-04 17:24:52 +02:00
alalazo	2d6db06fca	unit test : prerequisites	2016-06-04 17:24:27 +02:00
alalazo	ffa6fed3a3	unit test : custom module file load	2016-06-04 17:20:06 +02:00
alalazo	422d3d4db6	unit test : write a whitelisted module	2016-06-04 16:46:15 +02:00
alalazo	09b1daa7b9	unit test : write a blacklisted module	2016-06-04 16:23:41 +02:00
alalazo	408aa10210	unit test : whitelist	2016-06-04 16:18:15 +02:00
alalazo	a3f39c2315	autopep8 : fixed style issues	2016-06-04 11:23:23 +02:00
alalazo	97e2834816	unit test : wrong tag for dependencies	2016-06-04 11:20:35 +02:00
alalazo	2207ab8f23	unit test : inspect_path	2016-06-04 10:44:37 +02:00
alalazo	0e71b5dde8	unit test : update dictionary extending lists	2016-06-04 10:07:13 +02:00
Mario Melara	30c204a0a5	Made a merge commit earlier with Todd fixing all_platforms, but changed how architecture looks in spec.yaml. Just three strings. Also made some flake8 formatting changes	2016-06-03 16:16:59 -07:00
Mario Melara	bc557cc765	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-06-03 15:59:00 -07:00
Mario Melara	24d160e93e	Changed how architecture looks like in spec.yaml. Now it's only three strings, platform, os, target in spec.yaml. Also did some flake8 formatting changes	2016-06-03 15:57:54 -07:00
Todd Gamblin	9d04dccb79	Update version to correspond to master.	2016-06-02 01:20:40 -07:00
Gregory Becker	817f43f927	Fixed config format to allow default compiler flags	2016-05-31 13:39:25 -07:00
Todd Gamblin	7bdf63a0fa	Fix some bugs in architecture.	2016-05-31 03:01:05 -07:00
Todd Gamblin	24ee32d7b0	More flexible reading of specs from DB, formatting.	2016-05-30 22:02:22 -07:00
Todd Gamblin	f3f0122f11	Merge branch 'develop' into features/newarch	2016-05-30 13:54:53 -07:00
Mario Melara	b14ba31250	Quick fix for mock compilers.yaml to work on linux machines.	2016-05-30 13:22:08 -07:00
Mario Melara	716991775d	Added extra check on linux machines, since most linux machines don't have module system	2016-05-30 13:09:41 -07:00
Mario Melara	08a9d80ebc	Changed platform to py_platform to avoid name collisions. The naming collisions resulted in an error on linux machines	2016-05-30 13:07:20 -07:00
Mario Melara	f96c979024	Added a conditional to check if package is external	2016-05-30 13:05:49 -07:00
Todd Gamblin	e8b4d5fb6f	Performance boost: reduce instantiations of re.Scanner ... - Lexer is the same for every Spec parser in spack, so don't build it every time. - This improves time to import package.py files a lot, as a Lexer doesn't have to be constructed for every spc in the packages. - To concretize dealii: - Before: ~20 sec - After: ~6 sec	2016-05-28 23:05:23 -07:00
Mario Melara	22ca72e7b9	Added conditional skipIf to test_external_modules, darwin machines don't have tcl modules so skip this test and let user know why	2016-05-28 12:40:29 -07:00
Mario Melara	69585cb6e3	Added elcap compilers	2016-05-28 12:39:43 -07:00
Mario Melara	f0a9c45207	Adding external to mock config	2016-05-28 10:13:57 -07:00
Mario Melara	98a4a9f2cc	Adding test for external modules	2016-05-28 10:13:22 -07:00
Mario Melara	becec8ac7e	Added external module check in normalize to avoid infinite loop	2016-05-28 10:12:53 -07:00
Gregory Becker	9dad7c2ace	re-merged mainline develop	2016-05-27 13:13:19 -07:00
Gregory Becker	f49644cdea	Fixed typo in linux platform	2016-05-27 12:37:58 -07:00
Gregory Becker	023504ed64	Fixed the external modules bug	2016-05-27 12:26:59 -07:00
Todd Gamblin	285646bbfa	Merge pull request #981 from epfl-scitas/tests/unit_test_for_968 ... find : add unit tests	2016-05-27 11:00:45 -05:00
Todd Gamblin	2f18a34458	Merge pull request #989 from LLNL/features/cflags-documentation ... updated documentation for cflags PR	2016-05-27 10:59:40 -05:00
Gregory Becker	a2f90453f4	Fixed backwards compatibility for compilers.yaml config file	2016-05-26 20:30:05 -07:00
Mario Melara	9c1da4fa4c	Corrected parantheses wrapping	2016-05-26 13:58:17 -07:00
Gregory Becker	189e8b3f34	fixed compiler config init logic	2016-05-26 13:17:01 -07:00
Gregory Becker	88bec814eb	Allow 'arch=' syntax for specs to allow copying from output	2016-05-26 12:10:41 -07:00
Gregory Becker	c0661744cc	fixed compatibility work	2016-05-26 11:38:40 -07:00
Gregory Becker	b968603a57	made yaml format backwards compatible	2016-05-26 11:14:05 -07:00
Mario Melara	3b675d8b70	Changed comparison operator so that we don't get caught in an infinite loop	2016-05-26 11:09:14 -07:00
Gregory Becker	c30fe932d9	fixed mock config to use truncated versions of linux distro versions	2016-05-25 16:34:45 -07:00
Gregory Becker	8f99334f11	Fixed test config to work on yosemite	2016-05-25 16:06:14 -07:00
Todd Gamblin	76d42b5200	Merge pull request #982 from trws/rust ... Rust	2016-05-25 15:15:51 -05:00
Gregory Becker	0f40174723	added test platform	2016-05-25 12:28:59 -07:00
Gregory Becker	3a68dd2011	(hopefully) final fixes of the merge	2016-05-25 12:22:16 -07:00
Gregory Becker	74dc7ffe4d	updated documentation for cflags PR	2016-05-25 10:56:12 -07:00
Peter Scheibel	dd26c0bbcc	merge from develop	2016-05-24 18:56:44 -07:00
alalazo	84707ed926	modules : it's possible to add suffixes to module files based on constraint	2016-05-24 15:23:52 +02:00
Gregory Becker	513aae5ef8	fixed bug where earlier test was blowing away environment, causing an error on which('modulecmd')	2016-05-23 17:39:06 -07:00
Gregory Becker	1da6bbd146	Fixed a couple more bugs	2016-05-23 17:25:54 -07:00
Gregory Becker	d438ea0880	'Ugly merge because I mishandled git ... Merge branch 'save' into features/newarch	2016-05-23 16:57:54 -07:00
Gregory Becker	d7612e7aaa	Fixed errors caught by spec and concretize tests	2016-05-23 16:54:41 -07:00
Mario Melara	6c352132d0	Started writing documentation for architecture. Might need a couple more drafts	2016-05-23 14:28:00 -07:00
alalazo	0890ac4507	modules : explicit module file load from configuration files	2016-05-23 10:54:48 +02:00
Todd Gamblin	3ab56a188e	Fixes #980: really slow spack spec performance ... - `spack spec dealii` now takse seconds rather than 18 minutes. - Slow hash (`dag_hash`) was accidentally inserted into the fast hash (`__hash__`). - Do not put the slow hash in the fast hash.	2016-05-22 18:33:13 -07:00
Tom Scogland	9bd4bc02d6	fixing warning for package fetch	2016-05-22 11:16:00 -07:00
Todd Gamblin	d087086581	update documentation.	2016-05-21 14:33:05 -07:00
Mario Melara	c3767d593d	compiler list is sorted in descending order, in order to get most up to date version we check from the beginning of the list	2016-05-20 15:48:13 -07:00
alalazo	7303c387e8	autopep8 : fixed style	2016-05-20 10:34:11 +02:00
alalazo	b485ca8198	find : added unit tests, exits with 1 if -E and -e are given	2016-05-20 10:32:46 +02:00
Mario Melara	175a042fd3	Changed rpaths method so that it only grabs rpaths using the compiler module name instead of PrgEnv-x module name	2016-05-19 16:42:13 -07:00
Mario Melara	36450b9bc9	Adding link_paths to craype compilers	2016-05-19 14:25:50 -07:00
Gregory Becker	19c8a52fe1	fixed spec syntax test	2016-05-19 09:53:49 -07:00
Brett Viren	126fc10b9d	Remove view print for now.	2016-05-19 08:36:18 -06:00
Gregory Becker	63459ab0c7	Fixed some of the bugs	2016-05-18 18:21:52 -07:00
Gregory Becker	01d5ffcd87	Fixed the first set of merge bugs	2016-05-18 17:42:11 -07:00
Mario Melara	16431f7a4c	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-05-18 17:26:30 -07:00
Mario Melara	b25da51638	Changed unsatisfiable architecture test	2016-05-18 17:26:06 -07:00
Mario Melara	6926f4d0da	Changed arch tests to new spec target= os=	2016-05-18 17:23:10 -07:00
Gregory Becker	5417f1cdc6	more merge work	2016-05-18 17:21:03 -07:00
Gregory Becker	b1e5eafb80	more merge work	2016-05-18 17:18:26 -07:00
Gregory Becker	deb5011d08	more merge work	2016-05-18 17:14:16 -07:00
Mario Melara	b4b7942230	Moved searching of flags into get compilers in compilers_for_spec	2016-05-18 17:07:23 -07:00
Mario Melara	9f8ff32bcc	Got rid of ifdefs, changed parameters for Compiler: added kwargs	2016-05-18 17:05:11 -07:00
Mario Melara	faa0f2a13c	got rid of ifdef	2016-05-18 17:01:59 -07:00
Gregory Becker	80310a3b7c	Finished merge on these files	2016-05-18 16:50:50 -07:00
Gregory Becker	9f59c128be	Partial merge of mainline develop	2016-05-18 15:13:40 -07:00
Tom Scogland	a1f8cc2817	peren-nesting fix in spec	2016-05-18 14:24:16 -07:00
Tom Scogland	29635b7bbd	initial docs for find and flake8 cleanup	2016-05-18 14:04:39 -07:00
alalazo	23c7089789	fixes #967, flake8 approved	2016-05-18 11:52:27 +02:00
alalazo	fcc30cbf30	fixes #967	2016-05-18 11:48:03 +02:00
Todd Gamblin	502420ceff	Merge branch 'features/cflags' into develop ... Conflicts: lib/spack/spack/cmd/find.py var/spack/repos/builtin/packages/ghostscript/package.py	2016-05-17 16:44:54 -07:00
Todd Gamblin	9d584d0c47	Tag Spack version 0.9 ... - Tagging a version to include all that's happened since 0.8.17 - This is in anticipation of merging `features/cflags` and `features/newarch`, which will break the spec format. - 1.0 will likely come after those.	2016-05-17 16:06:43 -07:00
Todd Gamblin	15e9d5f96e	Merge pull request #868 from trws/explicitly-installed ... track whether a package was installed "explicitly"	2016-05-17 14:28:17 -07:00
Todd Gamblin	138307dd0c	Merge pull request #955 from trws/lua-rework ... complete lua rework	2016-05-17 13:21:51 -07:00
Erik Schnetter	fcc4c1b2f2	Remove duplicate providers that can concretize to the same result ... Patch generously provided by @becker33. Closes #928.	2016-05-17 15:13:28 -04:00
Gregory Becker	0fd9cdb861	Fixed config tests for new compiler config format	2016-05-16 09:56:07 -07:00
Gregory Becker	7705603f73	Added more compilers to mock packages tests	2016-05-16 09:43:46 -07:00
Tom Scogland	8859a09cd2	handle explicit when requesting to install already installed packages	2016-05-16 08:08:40 -07:00
Tom Scogland	4acdfeae61	track whether a package was installed "explicitly" ... Adds a new attribute in the database to track whether a package was installed explicitly or not, where explicitly is the user running `spack install <package>` and implicitly is it being installed as a dependency. It also adds arguments to `spack find` to find these packages such that it should be possible to query the packages that were installed implicitly and are not currently depended upon any longer.	2016-05-16 08:08:40 -07:00
Brett Viren	1bbe6409e1	Merge remote-tracking branch 'upstream/develop' into view-fix-merge	2016-05-16 10:09:31 -04:00
Brett Viren	77a34ebdf9	flake8-clean.	2016-05-16 10:08:59 -04:00
Tom Scogland	dacedfcc0e	formatting to appease flake8	2016-05-16 05:12:30 -07:00
Tom Scogland	c6524d0311	environment: fixed comment and default separator	2016-05-15 09:50:21 -07:00
Tom Scogland	577657b3f7	go rework ... This commit includes: * a new go package that uses gccgo to bootstrap the go toolchain * env support added to Executable * a new Go fetch strategy that uses `go get` to fetch a package and all of its deps * A platinum searcher package that leverages the new go package and fetch strategy	2016-05-14 22:35:55 -07:00
Tom Scogland	a2197f3a41	yet more sacrifices to the god of short-lines	2016-05-14 17:51:58 -07:00
Tom Scogland	df30182a10	appeasing flake8 in environment	2016-05-14 17:39:59 -07:00
Tom Scogland	12e36ee0e7	fix merge error	2016-05-14 16:20:45 -07:00
Tom Scogland	b5979b13e3	complete lua rework, also module path fix ... This is a complete rework of the lua package, it also allows the environment modification classes to handle paths that are not separated by colons, and uses the support for same in TCL modules as well. The biggest difference is the handling for lua extension packages, which now have their paths set correctly by the lua parent package, and have access to both lua and luarocks as installation tools. See the luaposix package for what should be required for most lua packages after this.	2016-05-14 16:18:26 -07:00
Elizabeth Fischer	efa506b235	Preparing spack setup command for merge. Try this out for a while...	2016-05-14 17:09:11 -04:00
Brett Viren	b3ede099e2	Document command.	2016-05-14 13:15:25 -04:00
Brett Viren	c98afe2205	Pick a better name for the 'spec' parameters.	2016-05-14 13:14:51 -04:00
Brett Viren	8ddc1f8977	Move from str.format() to string.Template.	2016-05-14 09:11:04 -04:00
Gregory L. Lee	e9b71872a8	addressed PR#946 comments from @adamjstewart	2016-05-13 15:16:07 -07:00
Mario Melara	fce6ecb05c	Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers	2016-05-13 15:04:06 -07:00
Gregory Becker	f43cab0951	fixed pkgconfig issue	2016-05-13 14:39:20 -07:00
Gregory L. Lee	b8a91db089	Intel software packages and license enhancements	2016-05-12 20:04:45 -07:00
Gregory Becker	4c9dd028d2	Fixed error causing hang in env/cc	2016-05-12 17:20:48 -07:00
Todd Gamblin	5e13bba068	Fix #941: add copyright to new package files. ... - also reworded the boilerplate a bit.	2016-05-12 10:30:13 -07:00
Denis Davydov	68c681bb78	document blas and lapack usage in packages	2016-05-12 08:59:17 +02:00
Todd Gamblin	e7ced54369	Correct LLNL LGPL license template for clarity.	2016-05-11 21:22:25 -07:00
Todd Gamblin	14fe0b8ad2	Merge pull request #558 from adamjstewart/features/pgi ... Add Licensed Software Support	2016-05-11 17:17:47 -07:00
Gregory Becker	45bf93405a	Changed spec syntax for new parts from modules feature	2016-05-11 16:23:13 -07:00
Gregory Becker	2e1810e3a7	re-merging develop	2016-05-11 15:26:09 -07:00
Gregory Becker	566fec4015	Fixed variants in new format and removed print statements from debugging	2016-05-11 14:56:41 -07:00
Gregory Becker	0b5836cfce	Fixed flipped conditional in satisfies	2016-05-11 10:51:52 -07:00
Adam J. Stewart	c043275f1b	Final flake8 changes	2016-05-11 11:46:41 -05:00
Todd Gamblin	9cf5404bb7	Merge pull request #937 from davydden/features/unit_tests ... Features/package_test	2016-05-11 09:42:00 -07:00
Adam J. Stewart	5879f8207f	Flake8 formatting changes	2016-05-11 11:32:08 -05:00
Adam J. Stewart	ee7ec4fa66	Move all licensing support to pre/post_install hooks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	19f4b27fd2	Add documentation for packaging of licensed software	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8bcb812529	Allow multiple license symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	2a11cb8b76	Use global licenses with local symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	6906911e85	Allow license files to use different symbols for comments	2016-05-11 11:32:08 -05:00
Adam J. Stewart	b63d11d5b0	Formatting consistency	2016-05-11 11:32:07 -05:00
Adam J. Stewart	5cb45c253e	Bug fix	2016-05-11 11:32:07 -05:00
Adam J. Stewart	1b997f10a8	Add set_up_license function	2016-05-11 11:32:07 -05:00
Adam J. Stewart	8cba8d6d1d	Add default global variables for licensing information	2016-05-11 11:29:30 -05:00
Todd Gamblin	fd5d89b61c	Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config	2016-05-11 08:59:23 -07:00
alalazo	bb4b6c8ee2	flake 8 : fixed checks	2016-05-11 17:02:36 +02:00
Denis Davydov	eba264fcd0	fix formatting	2016-05-11 16:11:34 +02:00
alalazo	78ae5d7723	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config ... Conflicts: lib/spack/spack/config.py	2016-05-11 16:11:19 +02:00
alalazo	22bb0562fe	Revert "flake8 : fixed all issues?" ... This reverts commit 71e49e289a.	2016-05-11 16:09:47 +02:00
alalazo	b215b19cae	modules : added docs	2016-05-11 15:42:48 +02:00
Denis Davydov	809ded74c9	add functions for simple unit tests; refactor openblas to use them	2016-05-11 15:10:13 +02:00
Benedikt Hegner	0b7b25487f	improve error message for wrong config section names	2016-05-11 13:29:27 +02:00
Todd Gamblin	6d6eb0f2d1	Remove config.py from flake checking for now.	2016-05-11 02:32:13 -07:00
Todd Gamblin	fc8d18ebdc	Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config	2016-05-11 02:31:20 -07:00
Todd Gamblin	9030541e4b	Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages ... QA : make qa checking less painful	2016-05-11 02:26:07 -07:00
Benedikt Hegner	c1e6b52184	first round of coding rules	2016-05-11 00:28:12 +02:00
Benedikt Hegner	05b6c3f8cf	add test for list parameters	2016-05-11 00:14:24 +02:00
Benedikt Hegner	6e462abb4d	hmm... test before commit	2016-05-10 23:31:29 +02:00
Benedikt Hegner	5d477bc956	fix setting config for list parameters	2016-05-10 23:19:30 +02:00
Todd Gamblin	98faee1d5c	Minor tweaks to flock docs.	2016-05-10 11:19:17 -07:00
Todd Gamblin	a49662276d	Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock	2016-05-10 11:10:07 -07:00
Luca Heltai	4cb91d6f7b	Added documentation on lockf/flock.	2016-05-10 19:46:24 +02:00
alalazo	7d74e209f3	qa : this should still fail due to F821	2016-05-10 19:20:26 +02:00
alalazo	979b53cab6	qa : modifying 2 packages and a framework file just for the sake of it	2016-05-10 18:33:07 +02:00
alalazo	71e49e289a	flake8 : fixed all issues?	2016-05-10 17:19:22 +02:00
alalazo	c3f3f26632	modules : added warning if a user tries to add prerequisite with dotkit	2016-05-10 16:16:50 +02:00
alalazo	0b7c673205	modules : changed syntax for environment modifications	2016-05-10 15:48:37 +02:00
alalazo	f8f71b1c2c	modules : prefix_inspections moved to modules.yaml	2016-05-10 13:37:03 +02:00
alalazo	9eee71edf7	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-05-10 11:13:19 +02:00
Todd Gamblin	42edb6840e	Merge pull request #905 from adamjstewart/features/rpath_flag ... Allow compilers to specify their own rpath linking flags	2016-05-10 01:56:49 -07:00
Todd Gamblin	a2528a86b4	Merge pull request #692 from mathstuf/quoted-command-lines ... executable: quote arguments	2016-05-10 01:42:26 -07:00
Todd Gamblin	8ce45d2161	Merge pull request #775 from epfl-scitas/fixes/config_update ... fix: proper update of config file	2016-05-10 01:35:56 -07:00
Todd Gamblin	57e495943f	Merge pull request #757 from glennpj/extend_r ... Make R extendable	2016-05-10 01:30:13 -07:00
Todd Gamblin	69f6baf28e	Merge pull request #842 from hegner/compiler_lookup_order ... Bugfix - preserve lookup order in PATH when invoking 'spack compiler add'	2016-05-10 01:11:18 -07:00
Todd Gamblin	cbfba84aa2	Merge pull request #849 from brettviren/bugfix/share-pkgconfig ... Add to sub dirs checked for pkg-config files.	2016-05-10 00:59:01 -07:00
Gregory Becker	c6ac709d70	WIP fixing all the things that broke when I changed the anonymous spec names	2016-05-09 17:06:21 -07:00
Gregory Becker	a7026da45c	cleanup	2016-05-09 16:24:26 -07:00
Gregory Becker	222c84d9be	Changed anonymous specs to have name=None instead of empty string	2016-05-09 16:22:17 -07:00
Adam J. Stewart	6665a996e6	Add documentation for rpath_flag handling	2016-05-09 17:04:14 -05:00
Adam J. Stewart	58733eb26a	Comment change	2016-05-09 16:59:39 -05:00
Adam J. Stewart	b211829fb1	Testing typo	2016-05-09 16:59:39 -05:00
Adam J. Stewart	4473311bdb	Allow compilers to specify their own rpath linking flags	2016-05-09 16:59:39 -05:00
Denis Davydov	7a2d65967c	wrap tty.die to 80 chars	2016-05-09 22:04:34 +02:00
Todd Gamblin	73107d6b0f	cleanup	2016-05-09 03:40:34 -07:00
Todd Gamblin	0c853ac3ea	Make _hash private to discourage access; fix dag_hash length handling.	2016-05-09 03:39:08 -07:00
Todd Gamblin	7151fd8836	Restore cc from mainline; clean up some cflags stuff.	2016-05-09 03:37:27 -07:00
Brett Viren	f1900f6a7b	Add a 'print' view allowing genreation of arbitrary strings based on format using package/spec parameters.	2016-05-08 10:25:21 -04:00
Brett Viren	2d1430da13	Address all coments in @trws's latest comment in PR #869. ... I addressed them by factoring the code better to follow the visitor pattern. This will allow actions to be easily added in the future. These may not even be file sytsem views. One could add actions to generate shell init scripts, JSON DAG-dumpers, GraphViz DOT file generators, etc (yes, some of these are alread in there - just to give the idea). Also added is a top-level test $ source share/spack/setup-env.sh $ ./share/spack/examples/test_view.sh Read the top of that script first.	2016-05-07 18:24:24 -04:00
Gregory Becker	d392056457	Cleaning up print statements for debugging	2016-05-06 18:05:30 -07:00
Gregory Becker	1523ebe9f7	Working properly to display but not reuse old specs from yaml	2016-05-06 18:03:43 -07:00
Gregory Becker	06b9433351	Fixed previous commit	2016-05-06 12:35:43 -07:00
Gregory Becker	bc087cfefb	Fixed database to account for hashes when reading install records	2016-05-06 12:28:46 -07:00
Gregory Becker	9f37e4c907	Made spec hashes immutable once concrete -- improved	2016-05-06 12:05:51 -07:00
Gregory Becker	addcde4f35	Made spec hashes immutable once concrete	2016-05-06 12:05:27 -07:00
Gregory Becker	2f821b9e9b	temp	2016-05-05 18:13:56 -07:00
Gregory Becker	9a39ccea8f	Every old spec has empty compiler flags	2016-05-05 17:49:30 -07:00
Gregory Becker	1bb7bfaf7f	Versioning the database -- automatic reindex	2016-05-05 17:38:51 -07:00
Gregory Becker	3fc1344865	temp	2016-05-05 17:11:09 -07:00
Gregory Becker	11b62114bb	versioning the database	2016-05-05 16:58:00 -07:00
Elizabeth Fischer	6a48385111	Keep users environment in the spack setup script (spconfig.py). This is important to avoid breaking things that require module loads to work; for example, non-activate Python packages.	2016-05-05 17:48:24 -04:00
Todd Gamblin	9fb1a9537d	Merge branch 'develop' into features/cflags	2016-05-05 10:49:15 -07:00
Denis Davydov	c37ea9aff5	document usage of compiler flags properties	2016-05-05 11:56:58 +02:00
Denis Davydov	f84f04591b	substitute cxx14_flag by a property with the same name to be overridden in derived classes	2016-05-05 10:48:31 +02:00
Denis Davydov	c6fb6bde40	remove cxx11_flag from Compiler as it is now substituted by a property with the same name	2016-05-05 10:47:02 +02:00
Denis Davydov	ddcb97f953	add a temporary Nag.cxx11_flag property	2016-05-05 10:44:41 +02:00
Denis Davydov	473a5542be	compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class	2016-05-05 10:44:41 +02:00
Denis Davydov	30b65d3114	fix comment in Compiler class	2016-05-05 10:44:41 +02:00
Denis Davydov	e28ca3922f	compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag	2016-05-05 10:44:41 +02:00
Denis Davydov	d5a760776a	compiler: add default implementation of openmp_flag() and css11_flag()	2016-05-05 10:44:41 +02:00
Denis Davydov	6a418cfb8d	compiler: simplify Clang.is_apple	2016-05-05 10:44:41 +02:00
Denis Davydov	f2f1c49c90	compilers: one more missing import statement	2016-05-05 10:44:41 +02:00
Denis Davydov	07fd0ccc9a	compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version	2016-05-05 10:44:41 +02:00
Denis Davydov	592045cd54	compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version	2016-05-05 10:44:41 +02:00
Denis Davydov	3cd3052c56	compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag()	2016-05-05 10:44:41 +02:00
Denis Davydov	c078deaab1	compilers: add missing import statements	2016-05-05 10:44:41 +02:00
Denis Davydov	9776dc0433	compilers: add openmp_flag() method	2016-05-05 10:44:41 +02:00
Denis Davydov	2cdfe14e5a	compilers: make sure cxx11_flag() is defined for all compilers	2016-05-05 10:44:41 +02:00
Todd Gamblin	13e52962ee	Merge pull request #802 from gartung/std-cpp14 ... Handle c++11 and c++14 correctly	2016-05-05 01:41:55 -07:00
Gregory Becker	90b7b7ba5c	Reworked compiler finding/storing/format to allow for multiple compilers with the same spec for different operating systems. TODO: fix config tests. All others up to date	2016-05-04 21:42:59 -07:00
Elizabeth F	2243de9e2f	Make quiet mode default for spack spconfig	2016-05-04 23:39:27 -04:00
Denis Davydov	c3317819cb	mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names	2016-05-04 10:37:52 +02:00
Brett Viren	346f102234	Bug fixes, tty tweaks.	2016-05-01 17:13:44 -04:00
Brett Viren	8c140f4725	Change the action from parameter to subcommand to fit Spack convention.	2016-05-01 17:13:43 -04:00
Brett Viren	a2b9a000dc	Add add removal and status actions in addition to link and add various ways to filter what is done.	2016-04-29 15:12:09 -04:00
Gregory Becker	4ba73dac34	Unit tests for cflags PR	2016-04-28 14:01:38 -07:00
Todd Gamblin	8cd13d4b35	Make arch command print out the platform.	2016-04-28 12:49:21 -07:00
Brett Viren	49956faab9	First try to make file system views of specs.	2016-04-28 14:54:14 -04:00
Gregory Becker	3b84345b77	Changed yaml format for node_dicts to mitigate future incompatibilities	2016-04-28 11:05:59 -07:00
Todd Gamblin	c35994d5bf	Merge pull request #850 from mathstuf/partial-downloads ... fetch_strategy: download to temporary files	2016-04-28 10:22:43 -07:00
Gregory Becker	ae5198e5e7	Merged in current develop to cflags 042716	2016-04-27 19:38:51 -07:00
Elizabeth F	4d466fe879	spack setup: Fix broken module convenience settings.	2016-04-27 20:57:04 -04:00
Todd Gamblin	8773a0b747	Merge pull request #847 from epfl-scitas/features/test_install_with_time ... test-install command : added elapsed time + xml is prettyprinted	2016-04-27 17:32:21 -07:00
Ben Boeckel	e53571d2f0	fetch_strategy: download to temporary files ... This supports graceful recovery if spack is killed via a signal (e.g., SIGINT) while downloading a file. Fixes #287.	2016-04-27 14:49:27 -04:00
Brett Viren	b5ebd12fe2	Add to sub dirs checked for pkg-config files. ... This lets me build against the pure-include package Eigen.	2016-04-27 13:45:05 -04:00
Massimiliano Culpo	b1ba869b37	test-install : fixed error in logic exposed by tests	2016-04-27 19:28:13 +02:00
Massimiliano Culpo	4846ab70d8	test-install : python 2.6 compatibility	2016-04-27 18:21:36 +02:00
Massimiliano Culpo	ec5bb88820	test-install : unit tests (hopefully) fixed for real	2016-04-27 18:06:41 +02:00
alalazo	42fab1591d	test-install : fixed unit tests	2016-04-27 17:19:03 +02:00
alalazo	12dbd65f4c	test-install : first draft that works	2016-04-27 13:56:32 +02:00
Benedikt Hegner	b7c064142e	preserve lookup order in PATH when invoking 'spack compiler add'	2016-04-27 01:23:53 +02:00
Ben Boeckel	603467785b	Compiler find docs (#831) ... * docs: mention `spack compiler find` * docs: fix some weird wording.	2016-04-26 10:00:54 -07:00
alalazo	99b52e6e71	test-install : wip to add other information	2016-04-26 16:41:33 +02:00
Ben Boeckel	ff9145f8a5	executable: quote arguments ... This allows command line arguments with spaces to be shown. The quoting madness is because a single quote cannot appear within a single quoted argument on the command line. To do so, you have to stop the single quote argument, double quote the single quote, then open the single quote again: $ echo 'before'"'"'after' before'after Fixes #174	2016-04-25 09:44:17 -04:00
Ben Boeckel	ed16bd133a	compiler: add "find" subcommand (#818) ... And make "add" an alias to it. Fixes #713.	2016-04-23 13:34:51 -07:00
alalazo	67a01ef2ee	tcl : extended conflict to be an array of strings	2016-04-22 10:50:24 +02:00
Todd Gamblin	fa02f94ca4	Regression test for not adding RPATHs with ld -r (#809, #821) ... - ld -r is only broken with rpaths on OSX; this tests that specific case. - test should still work cross-platform.	2016-04-21 23:12:33 -07:00
Denis Davydov	a0989ad672	minor cleanup of environment-modules documentation (#814) ... * minor cleanup of environment-modules documentation * environment modules: update usage instructions	2016-04-21 19:26:19 -07:00
Patrick Gartung	d5d1e89cbd	remove use of unknown environment variable in lib/spack/env/cc (#821)	2016-04-21 19:15:54 -07:00
Adam Lyon	e92da6a6ba	Handle c++11 and c++14 correctly	2016-04-19 16:52:08 -05:00
alalazo	5deaaa278c	modules : added a few unit tests	2016-04-19 14:25:12 +02:00
alalazo	bce276d573	fix : missing autoload, failing validation	2016-04-18 17:51:53 +02:00
alalazo	50b148ca22	modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498	2016-04-18 13:22:50 +02:00
alalazo	18a241fe21	modules : added hook for module specific extensions	2016-04-18 13:22:31 +02:00
alalazo	c69acfa5c8	naming work correctly	2016-04-18 13:22:04 +02:00
alalazo	00f44d558a	modules : started working on naming schemes and conflict	2016-04-18 13:21:41 +02:00
alalazo	1b4c4be151	modules : category is a single word (as I am not sure how dotkit will react to spaces)	2016-04-13 12:44:51 +02:00
alalazo	c422ce7c1d	modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules	2016-04-13 11:26:22 +02:00
alalazo	fcd58a95dd	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-04-13 10:49:00 +02:00
alalazo	27280ea8be	fix : added regression tests	2016-04-12 17:28:23 +02:00
alalazo	80678b2188	fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774	2016-04-12 16:54:51 +02:00
alalazo	41f365112c	modules : added provenance comment in tcl header	2016-04-12 09:13:50 +02:00
alalazo	3959ca6270	modules : added possibility to blacklist or whitelist module files	2016-04-11 18:10:06 +02:00
alalazo	0e2b1359e3	modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies	2016-04-11 11:01:47 +02:00
Massimiliano Culpo	a5a5dbc408	tcl module file : added new-lines in autoload (per @glennpj bug report)	2016-04-10 13:21:41 +02:00
Mario Melara	3a281b2399	Commented out the add_x_from_string methods since we don't need to worry about it. Also, changed the way architecture is set. Todd wanted to have users be able to input just frontend and/or backend in the architecture spec. This will be able to parse those inputs.	2016-04-08 12:46:44 -07:00
Mario Melara	01a36ab333	Changed the logic of concretize. We don't have to worry about whether the part of the spec is a string since any string parsed is made into an object via the Arch constructor. Any dependencies will take the root arch spec as well	2016-04-08 12:44:27 -07:00
Mario Melara	5bcd1e7ccd	If we already have the name and the platform, then we should probably go ahead and concretize it in the constructor. Else leave it as None and concretize it later.	2016-04-08 12:43:08 -07:00
Mario Melara	618b3f5f2d	Changed default to default_target so the tests can pass	2016-04-08 11:18:30 -07:00
Mario Melara	277efc1dfb	Added test that works on every type of combination the user could possibly enter for arch spec	2016-04-08 11:17:56 -07:00
Matthew LeGendre	1af88be371	Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list.	2016-04-08 11:06:14 -07:00
Mario Melara	0d1a1b7526	Changed _set_architecture so if user inputs only the target, then os is None. This prevents the os being referenced before assignment error	2016-04-08 10:29:37 -07:00
Mario Melara	6ff6c805af	Assigned self.front_os, and back_os to self.default. Helps with testing. If we're on a darwin or linux machine, chances are there is no back end or front end operating system, but rather than have those as None, I just assign them the default which is detected via python platform.	2016-04-08 10:28:30 -07:00
Mario Melara	7b777568ed	Added new concretization of architecture tests, test each combination of user input to make sure the correct os and target are chosen	2016-04-07 14:38:43 -07:00
Mario Melara	0ad317213c	Changed architecture parser so that if user just enters in frontend or backend, then both the os and target will take those names. In the concretize method the frontend target/os and backend target/os will be picked to match each other	2016-04-07 14:38:04 -07:00
Mario Melara	07df403203	Cleaned up the concretize_architecture method by removing commented out code	2016-04-07 14:37:00 -07:00
Mario Melara	143a4d7f76	Changed default to default_target, also added frontend and backend to operating system	2016-04-07 14:36:26 -07:00
alalazo	1714f410f0	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-04-07 10:48:16 +02:00
alalazo	7dc1524c08	modules : added stub for dotkit (to be verified)	2016-04-07 10:48:05 +02:00
Glenn Johnson	b19d6ab9c5	Check for non-numeric bits in the stem.	2016-04-06 19:08:01 -05:00
Glenn Johnson	fbabfc593d	Make R extensable and add a couple of packages for verification. ... Added R as a build system so that the create template will have the correct configure line. Added a regex for version parsing as the R URLs are a little odd.	2016-04-06 16:44:22 -05:00
Mario Melara	99117cbc90	pulled from current repo the build_environment.py. Added module loading methods from our cray port	2016-04-06 14:07:22 -07:00
Mario Melara	918ad28a93	Changed all target values to architecture. Also added a sort_key method so that older architecture specs can be sorted with the newer ones	2016-04-06 13:58:29 -07:00
Massimiliano Culpo	4001663982	leftover from cherry-pick	2016-04-06 22:19:07 +02:00
alalazo	73b6214a13	module files : proper cleanup on uninstall fixes #216 ... Conflicts: lib/spack/spack/test/database.py	2016-04-06 22:10:04 +02:00
Mario Melara	749508af01	Found loops calling all_compilers that were always reading in the config file which lead to a slowdown, the fix is to cache the config file so we don't waste time re-reading the config file in again.	2016-04-06 12:05:29 -07:00
Mario Melara	3bf75fab3f	Cleaned up architecture. Changed operating_system from dictionary method	2016-04-06 12:03:26 -07:00
alalazo	21b7734d92	modules : removed debug leftover	2016-04-06 17:08:31 +02:00
alalazo	7904f75782	modules : all the other strings are lower case	2016-04-06 17:05:47 +02:00
alalazo	e4cfe74887	modules : customization based on specs	2016-04-06 16:42:56 +02:00
alalazo	e993c17f89	modules : added environment modifications from configuration file	2016-04-06 14:02:27 +02:00
alalazo	d636b4fdde	modules : more sensible name to blacklist environment variables ... modules : added skeleton to permit modifications based on specs	2016-04-06 13:42:47 +02:00
Todd Gamblin	e104592e1f	Merge pull request #738 from eschnett/eschnett/cleanup-cc ... Clean up cc script	2016-04-05 10:50:45 -07:00
alalazo	670cb423f9	modules : iterating on all the dependencies doesn't reuire try/except KeyError	2016-04-05 18:44:40 +02:00
alalazo	5da37c573f	modules : don't pass stream around	2016-04-05 18:41:38 +02:00
alalazo	2968b60ee0	module file : added autoload and prereq	2016-04-05 18:03:09 +02:00
alalazo	ca7d701007	module file : all the dependencies can affect the run_time environment, not only extendees	2016-04-05 16:10:04 +02:00
alalazo	c352249e30	EnvModules : narrowing the type of exceptions being "handled"	2016-04-05 14:55:05 +02:00
Erik Schnetter	4ce03b75bc	Correct typo	2016-04-05 07:42:23 -04:00
alalazo	d546d828d3	module file : added filtering based on environment variable name	2016-04-05 13:20:28 +02:00
Mario Melara	9bfc83ac5c	Changed so that py_platform.dist() grabs the major version number.	2016-04-04 15:36:10 -07:00
Todd Gamblin	0296f96c7b	Resolves #739. Don't call setup_dependent_* for package itself.	2016-04-04 13:56:15 -07:00
Mario Melara	6d73c86209	Gives error on cori that [PrgEnv-xx, gcc/x.x.x] is not part of the schema. Changed it to oneOf : type : array to get rid of the error.	2016-04-04 13:45:15 -07:00
Mario Melara	9c071ea40d	Changed modulecmd parameters. return_oe is not one of the parameters in the mainline spack repo. Changed the args to the appropriate ones in the new spack	2016-04-04 13:44:24 -07:00
Erik Schnetter	0ff059e388	Clean up comments and output messages	2016-04-04 16:00:09 -04:00
Erik Schnetter	83d6e04d39	Convert = to == in tests; untabify	2016-04-04 15:38:21 -04:00
Erik Schnetter	7bc28cc334	Clean up cc script	2016-04-04 14:33:48 -04:00
Todd Gamblin	5084130e71	Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules ... Added Environment Modules	2016-04-04 10:41:54 -07:00
Todd Gamblin	c7b11360e9	Merge pull request #732 from citibeth/efischer/160403-ConditionalExtendsBugfix ... [Needs Review] Fix conditional extends (BUG #683)	2016-04-04 10:21:26 -07:00
Todd Gamblin	a6c1cfe037	Merge pull request #670 from epfl-scitas/uninstall_improved ... enhancement : recursive uninstallation of dependent packages	2016-04-04 10:04:14 -07:00
Todd Gamblin	bb968fc5a2	Fix #620, Resolve #664. Fix issues with build environment. ... - Also added better regression tests for build environment.	2016-04-04 02:52:38 -07:00
alalazo	f40b0f52e0	uninstall : updated documentation and error messages	2016-04-04 10:59:01 +02:00
alalazo	401dcb3635	uninstall : renamed --recursive to --dependents	2016-04-04 10:28:47 +02:00
Elizabeth F	2f4d8a634d	Fix conditional extends (BUG #683)	2016-04-03 21:41:46 -04:00
citibeth	281835887a	Added documentation for recursive modules	2016-04-01 22:54:49 -04:00
Elizabeth F	c6d8208150	Added recursive module loading	2016-04-01 22:54:42 -04:00
citibeth	459aab628d	Added documentation for installing Environment Modules with Spack.	2016-04-01 16:00:58 -04:00
Peter Scheibel	9eb314fcaa	merge from develop	2016-03-31 12:56:34 -07:00
Todd Gamblin	220c72d67f	Merge branch 'features/blas-lapack-hardening' into develop	2016-03-31 11:37:09 -07:00
Todd Gamblin	a670408617	Quick fix for pkg diff.	2016-03-31 11:34:27 -07:00
Tom Scogland	5d2151ed64	reworked to deal with stage.path as property ... This version actually pulls the path through the package to deliver it to each stage on creation when passed through the command. This is necessary due to the new StageComposite class that makes setting the path directly on the stage impractical, it also takes the logic out of package for the most part, which seems like an improvement.	2016-03-31 10:20:55 -07:00
Tom Scogland	63f824b218	add a path argument to the stage command ... Allow users to use spack to stage a, potentially complex, package into a given path. This is nice for packages with multiple resources that must be placed, for example LLVM with all sub-projects.	2016-03-31 09:56:26 -07:00
Massimiliano Culpo	4f6320a7eb	uninstall : added unit tests	2016-03-31 13:22:48 +02:00
Massimiliano Culpo	dd1c667d8d	uninstall : changed error message	2016-03-30 16:10:20 +02:00
Peter Scheibel	a0c42a3fd1	removed stale TODO	2016-03-29 18:58:18 -07:00
Peter Scheibel	c40559433b	added docstring	2016-03-29 18:54:24 -07:00
Peter Scheibel	03d907e1e5	in the case of multiple digests, avoid creating different mirror filenames from run to run (as long as the available digests do not change)	2016-03-29 18:48:25 -07:00
Peter Scheibel	ce4de6227e	(1) access package via spec property (2) use any digest to form archive filename	2016-03-29 18:45:58 -07:00
Peter Scheibel	bee224c567	mirror archive filename now includes the digest type as well as the digest	2016-03-29 18:25:22 -07:00
Gregory Becker	7e9baf9e25	Made architecture test robust for more architectures	2016-03-29 11:23:36 -07:00
Massimiliano Culpo	653d7c5257	uninstall : minor fixes	2016-03-29 17:28:46 +02:00
Todd Gamblin	a05bea7de5	Merge pull request #681 from LLNL/bugfix/complete-restage ... Fix bug in restage	2016-03-29 05:11:21 -07:00
Todd Gamblin	dfc5cf288c	Fix bug in restage ... - Restage previously only removed the source directory from the stage. - Now removes any other directories in stage as well.	2016-03-29 04:35:41 -07:00
Todd Gamblin	e1fdd4341b	Merge branch 'eschnett-correct-cc' into develop	2016-03-29 04:16:18 -07:00
Todd Gamblin	f80e839ff4	Handle Darwin's ld -r option properly ... - ld -r doesn't work with RPATH on OS X. - for GNU ld, the -r option only means 'relocatable', and doesn't affect RPATH. - This adds special handling to omit RPATHs for ld -r on OS X	2016-03-29 03:14:39 -07:00
Todd Gamblin	a14527ec06	Add command to compiler input log.	2016-03-28 15:34:25 -07:00
Massimiliano Culpo	1141f11955	uninstall : added user confirmation	2016-03-29 00:28:02 +02:00
Todd Gamblin	d8579a5b80	Simplify cc: Remove old logic and add better tests. ... - removed a lot of old logic that was only still needed for tests. - Added better unit tests for dependency RPATH, -L, and -I args - tests now check whether the compiler omits -I args in link mode.	2016-03-28 04:11:54 -07:00
Todd Gamblin	f3dd889d44	Fix bug with lib64 RPATH setting in cc.	2016-03-28 03:51:05 -07:00
Todd Gamblin	eb397b5693	Merge pull request #669 from glennpj/module_format ... Wrap the long description of an environment module so it is more readable	2016-03-27 17:30:07 -07:00
Todd Gamblin	8b45d6f84f	Merge pull request #658 from davydden/metis_parmetis_darwin ... metis/parmetis/oce/boost: correct install_name on Darwin via a global tool	2016-03-27 16:10:05 -07:00
Denis Davydov	7eca1284c8	metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function.	2016-03-28 00:22:25 +02:00
Massimiliano Culpo	e0f463c4f9	uninstall : added recursive option	2016-03-27 23:56:41 +02:00
Glenn Johnson	5695e4c03d	Wrap the long description of an environment module so it is more readable.	2016-03-27 15:42:20 -05:00
Todd Gamblin	ec107b290f	Merge branch 'correct-cc' of git://github.com/eschnett/spack into eschnett-correct-cc	2016-03-27 13:38:06 -07:00
Todd Gamblin	e049fc2840	Run post-install hoooks before build stage is removed. ... - Build will properly fail when post-install hoooks fail. - Post-install hooks have a proper working directory set now.	2016-03-27 11:47:20 -07:00
Todd Gamblin	cde3320582	Add a method to find the containing directory of a library.	2016-03-27 11:32:42 -07:00
Todd Gamblin	dce590fb21	Add a dso_suffix variable to build_environment ... - Consolidate this in one place so that we don't have to do it in every build. - Will update further once better OS support is committed. Shoudl really be an attribute of the forthcoming `Platform` class.	2016-03-27 11:32:42 -07:00
Todd Gamblin	b0b882cbb3	Speed up directives by skipping debug info in stack traversal. ... - `caller_locals()` doesn't need debug info, only frame locals. - `get_calling_module()` doesn't either. - Changed calls to `inspect.stack()` -> `inspect.stack(0)`	2016-03-27 11:30:09 -07:00
citibeth	4a6b5d5247	Update to documentation formatting.	2016-03-27 00:14:10 -04:00
citibeth	a1c965d70d	Fixed imports to make `git spconfig` work after recent merge from develop.	2016-03-26 20:40:22 -04:00
Peter Scheibel	06c98320a8	handle case where file contents change but resource name does not (e.g. if resource maintainer uses same name for each new version of a package)	2016-03-25 18:38:26 -07:00
Gregory Becker	57ced37229	Fixed a bug in the testing	2016-03-25 17:03:49 -07:00
Gregory Becker	618a9b2d7b	Fixed bug in platform names that I introduced yesterday	2016-03-25 15:41:22 -07:00
Elizabeth F	9889b1a5fe	Added documentation for StagedPackage, etc.	2016-03-25 17:15:15 -04:00
Elizabeth F	8f675b0ee8	Made StagedPackage user-visible.	2016-03-25 17:15:06 -04:00
citibeth	358b387283	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage	2016-03-25 17:14:35 -04:00
citibeth	8019748396	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage ... # Conflicts: # lib/spack/spack/package.py	2016-03-25 15:36:54 -04:00
Peter Scheibel	bd5abb2922	spacing issue	2016-03-24 19:48:15 -07:00
Peter Scheibel	6423eab917	implemented cache_local method for DIY stage (as a noop)	2016-03-24 19:45:10 -07:00
Peter Scheibel	142d1f5cbc	stage creates cache fetcher with cache object (so it can be mocked for tests)	2016-03-24 19:28:21 -07:00
Gregory Becker	315623d361	Fixed things from merge.	2016-03-24 16:55:46 -07:00
Adam J. Stewart	9985816642	Fix spack info indentation	2016-03-24 14:49:41 -05:00
Peter Scheibel	fe71ba992d	remove unused import	2016-03-24 12:16:50 -07:00
Peter Scheibel	13bf7d4ff1	(1) move definition of MockCache to test command (no definitions or extra work is required in MockPackagesTest) (2) removing outdated logic (which originated in this branch) and minor cleanup	2016-03-24 12:02:39 -07:00
alalazo	758a9c9096	python extensions : create PYTHONPATH in module files	2016-03-24 10:57:46 +01:00
alalazo	f095e619b9	module files configuration : enable/disable logic is now positive	2016-03-24 09:31:28 +01:00
Peter Scheibel	dbfa6c925e	replace references to cache directory with references to new cache object. tests may assign a mock cache but by default it is None (this will avoid any implicit caching behavior confusing unit tests)	2016-03-23 20:18:58 -07:00
Peter Scheibel	ed0f6f75a7	clear test cache before and after each MockPackagesTest (I think Ive got a better way to avoid test fragility but Ill add this for now)	2016-03-23 19:49:28 -07:00
Gregory Becker	688eca23ff	cleanup	2016-03-23 09:54:57 -07:00
alalazo	d93f2b335d	modules : fixed annoying indent	2016-03-23 16:04:36 +01:00
alalazo	0fbdb3f65d	modules : added configuration file with disable keyword	2016-03-23 15:54:26 +01:00
Todd Gamblin	38350ae33d	resurrect preferred=True option for packages lost in merge of externals support. ... - Pyton 2.7.11 is preferred again.	2016-03-23 01:32:54 -07:00
Todd Gamblin	c4134ee71e	Fix #608: broken numpy build. ... - Failed to catch all instances of modify_module when it was renamed to setup_dependent_package. - Refactored remaining modify_module calls. - Also modified Python's setup_dependent_package slightly: only creates empty site-packages directory for Python extensions now, not for all dependents.	2016-03-23 00:36:32 -07:00
Peter Scheibel	cb9fba98d8	(1) relocate cache for tests (2) initial approach for restoring unit tests (just for git tests although the same concept applies to the other unit tests which are failing - namely those for svn and hg)	2016-03-22 19:37:47 -07:00
Gregory Becker	7c729d4c3c	Merged newarch into merge	2016-03-22 15:22:51 -07:00
Peter Scheibel	75460d8586	URLFetchStrategy.archive does a copy vs. a move now	2016-03-22 10:43:43 -07:00
Todd Gamblin	a26992ef55	Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package ... - Fixed in package.py - Fixed wrong prototypes in packages that use it. - Fixed build_environment to set module variables properly - added hacky fix to ensure spec/package consistency in build processes. - Need to think about defensive spec copy done by `Repo.get`. May be time to think about an immutable spec implementation.	2016-03-22 01:56:16 -07:00
Peter Scheibel	41a97c8f80	temporarily wrap archiving with conditional to avoid moving (this still causes a failure on the initial download)	2016-03-21 20:55:23 -07:00
Peter Scheibel	b255f02762	undoing whitespace-only diff	2016-03-21 20:50:26 -07:00
Peter Scheibel	ee5e507ff6	pursuing a strategy using fetch.archive and treating var/spack/cache as a mirror. this should support both URLFetchStrategy as well as VCSFetchStrategy (the previous strategy supported only the former). this won't work until URLFetchStrategy.archive is updated	2016-03-21 20:48:12 -07:00
Todd Gamblin	b1516f64eb	Rename some environment methods to be less repetitive, add set_path.	2016-03-21 16:01:40 -07:00
Todd Gamblin	439d47b4e4	Refactor environment setup. ... - Gave setup_environment and setup_dependent_environment more similar signatures. They now allows editing the Spack env and the runtime env for *this* package and dependents, respectively. - modify_module renamed to setup_dependent_python_module for symmetry with setup_dependent_environment and to avoid confusion with environment modules. - removed need for patching Package objects at runtime. - adjust packages to reflect these changes.	2016-03-21 16:01:35 -07:00
Todd Gamblin	e88df95b42	Remove unused code from modules.py	2016-03-21 16:01:26 -07:00
Todd Gamblin	48b35bb495	Fix print function in uninstall.py	2016-03-21 16:00:50 -07:00
Todd Gamblin	861a235ecb	Merge pull request #552 from epfl-scitas/features/env_objects_flying_around ... enhancement proposal : customization of module files	2016-03-21 15:56:20 -07:00