hlrs-software-stack/spack

Author	SHA1	Message	Date
Todd Gamblin	d7f48e1ff0	Merge pull request #1061 from mathstuf/reindex-preserve-explicit reindex: preserve 'explicit' flags	2016-06-17 14:29:47 -07:00
Todd Gamblin	0bbbfc2ef7	Merge pull request #946 from LLNL/features/intel2 Intel software packages and license enhancements	2016-06-17 14:28:39 -07:00
Tom Scogland	8770f2a0ea	fixing last flake8 issue	2016-06-17 13:42:27 -07:00
Tom Scogland	0743ef4d0b	fixing flake8 issues	2016-06-17 13:32:28 -07:00
Tom Scogland	a4ac99877a	cmd/list: adding description search and glob by default	2016-06-17 12:00:35 -07:00
Mario Melara	fe5eec5230	'find and 'add' are options for adding compilers via command line	2016-06-17 09:16:03 -07:00
Mario Melara	df84fe0b58	Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter.	2016-06-16 18:10:38 -07:00
Todd Gamblin	005827ab23	Replace 2.6-incompatible skipIf with a conditional. - skipIf doesn't work with Python 2.6.	2016-06-16 12:12:29 -07:00
Todd Gamblin	f60ae61652	remove dead code, cleanup.	2016-06-16 10:44:15 -07:00
Todd Gamblin	8867adf942	simplify instance check.	2016-06-16 10:43:36 -07:00
Todd Gamblin	c7dfa1699a	rename Mac OS X to macos	2016-06-16 10:43:12 -07:00
Mario Melara	6b03770602	Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not.	2016-06-16 09:44:37 -07:00
Todd Gamblin	88b73bacdb	Merge branch 'features/newarch' into develop Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py	2016-06-16 03:03:26 -07:00
Todd Gamblin	17b868381f	Fixes #460 : Do not show variants by default in spack find. This does two things: 1. By default `spack find` no longer shows variants. You have to supply `-v` to get that 2. This improves the `colify` implementation so that it no longer pads the rightmost column. This avoids the issue where if one spec was too long in the output, all specs would have space padding added to that width, and it would look like the output of `spack find` was double spaced. This no longer happens -- the one bad line wraps around and the other lines are now single-spaced when you use `-v` with boost.	2016-06-16 02:55:33 -07:00
Todd Gamblin	88b671f8b1	Just call old os "unknown"	2016-06-16 02:06:19 -07:00
Todd Gamblin	f3d6818d5c	be more tolerant when parsing new specs.	2016-06-16 00:55:39 -07:00
Todd Gamblin	c90cc465f5	Add `__contains__` to arch to satsify old packages.	2016-06-16 00:54:59 -07:00
Gregory L. Lee	d4df4375d5	removed unused import per flake8 report	2016-06-15 20:32:08 -07:00
Gregory L. Lee	1724ff5658	do not create shebang.bak file	2016-06-15 20:21:02 -07:00
Gregory Becker	3fcd54203c	two minor fixes	2016-06-15 16:44:38 -07:00
Gregory Becker	2fc9ac4036	Two minor fixes	2016-06-15 16:39:39 -07:00
Ben Boeckel	716f12dd58	reindex: preserve 'explicit' flags Look up in the old database whether the spec was explicit or not and preserve it into the new database. Fixes #1050.	2016-06-15 12:48:40 -04:00
Denis Davydov	3d3a26cd9a	flake8 fixes for filesystem.py	2016-06-15 18:31:10 +02:00
Ben Boeckel	36decbfa69	tty: do not break long words These "words" tend to be file paths which are best left unbroken. Fixes #1057.	2016-06-15 12:22:35 -04:00
Denis Davydov	a860a3d614	superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version	2016-06-15 18:21:13 +02:00
Massimiliano Culpo	30c9d976f6	environment : added more logic to treat append and prepend path	2016-06-12 18:54:56 +02:00
alalazo	5300ffac7f	qa : fixed flak8 checks	2016-06-12 15:11:26 +02:00
alalazo	a6681f2d7f	environment modules : added function to construct them from source files	2016-06-12 15:06:17 +02:00
alalazo	3737169450	qa : fixed style and a bug reported by flake8 lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306 Flake8 found errors.	2016-06-11 12:57:46 +02:00
alalazo	eb9b00b210	versions : added unit tests for the new properties	2016-06-11 12:44:21 +02:00
Gregory Becker	0fea167f97	I made a hash of that minor merge Merge commit '4eeb' into features/newarch	2016-06-10 16:28:09 -07:00
Gregory Becker	992bcac794	changed compiler yaml format	2016-06-10 16:26:02 -07:00
Erik Schnetter	2a4d440003	Add quotes around file name $input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.	2016-06-08 19:14:01 -04:00
Orion Poplawski	7ce08c4216	Remove last two remaining from external imports	2016-06-08 13:51:31 -06:00
Peter Scheibel	3b71d78f3c	rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors)	2016-06-08 09:57:56 -07:00
alalazo	564483936f	qa : fixed flake8 issues	2016-06-08 16:33:49 +02:00
alalazo	f4a39457de	lmod : updated package and dependencies	2016-06-08 15:35:15 +02:00
Peter Scheibel	a2754894ea	(1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit)	2016-06-07 16:26:54 -07:00
Mario Melara	5715799d4e	Added to_dict back into operating system	2016-06-07 14:15:28 -07:00
Mario Melara	4925be0bc4	Load external modules	2016-06-07 13:22:47 -07:00
Peter Scheibel	de1ec4be8b	change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version.	2016-06-06 12:26:13 -07:00
Mario Melara	196737c217	Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters	2016-06-06 10:29:19 -07:00
Mario Melara	835982faed	Changed OS name to CNL10 so that we properly find the compilers for the test platform	2016-06-06 09:08:59 -07:00
Mario Melara	864191b6ed	Got rid of unnecessary global keyword	2016-06-06 09:06:58 -07:00
Mario Melara	5b023bb0a1	Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system	2016-06-06 09:05:14 -07:00
Mario Melara	c7b48f6fef	Passing full arch for proper compiler spec so that we can use the platform to get the operating system	2016-06-06 09:04:24 -07:00
Mario Melara	f751d68177	Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding.	2016-06-06 09:03:32 -07:00
Tom Scogland	30e8e77fb6	Merge pull request #869 from brettviren/feature/views Feature/views	2016-06-05 11:31:48 -07:00
alalazo	bdd874eb7f	autopep8	2016-06-04 18:09:28 +02:00
alalazo	02cadb882b	unit test : suffixes	2016-06-04 18:09:06 +02:00
alalazo	669caefccb	unit test : wrong naming scheme in conflict	2016-06-04 18:00:18 +02:00
alalazo	d43cfefa43	autopep8	2016-06-04 17:24:52 +02:00
alalazo	2d6db06fca	unit test : prerequisites	2016-06-04 17:24:27 +02:00
alalazo	ffa6fed3a3	unit test : custom module file load	2016-06-04 17:20:06 +02:00
alalazo	422d3d4db6	unit test : write a whitelisted module	2016-06-04 16:46:15 +02:00
alalazo	09b1daa7b9	unit test : write a blacklisted module	2016-06-04 16:23:41 +02:00
alalazo	408aa10210	unit test : whitelist	2016-06-04 16:18:15 +02:00
alalazo	a3f39c2315	autopep8 : fixed style issues	2016-06-04 11:23:23 +02:00
alalazo	97e2834816	unit test : wrong tag for dependencies	2016-06-04 11:20:35 +02:00
alalazo	2207ab8f23	unit test : inspect_path	2016-06-04 10:44:37 +02:00
alalazo	0e71b5dde8	unit test : update dictionary extending lists	2016-06-04 10:07:13 +02:00
Mario Melara	30c204a0a5	Made a merge commit earlier with Todd fixing all_platforms, but changed how architecture looks in spec.yaml. Just three strings. Also made some flake8 formatting changes	2016-06-03 16:16:59 -07:00
Mario Melara	bc557cc765	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-06-03 15:59:00 -07:00
Mario Melara	24d160e93e	Changed how architecture looks like in spec.yaml. Now it's only three strings, platform, os, target in spec.yaml. Also did some flake8 formatting changes	2016-06-03 15:57:54 -07:00
Todd Gamblin	9d04dccb79	Update version to correspond to master.	2016-06-02 01:20:40 -07:00
Gregory Becker	817f43f927	Fixed config format to allow default compiler flags	2016-05-31 13:39:25 -07:00
Todd Gamblin	7bdf63a0fa	Fix some bugs in architecture.	2016-05-31 03:01:05 -07:00
Todd Gamblin	24ee32d7b0	More flexible reading of specs from DB, formatting.	2016-05-30 22:02:22 -07:00
Todd Gamblin	f3f0122f11	Merge branch 'develop' into features/newarch	2016-05-30 13:54:53 -07:00
Mario Melara	b14ba31250	Quick fix for mock compilers.yaml to work on linux machines.	2016-05-30 13:22:08 -07:00
Mario Melara	716991775d	Added extra check on linux machines, since most linux machines don't have module system	2016-05-30 13:09:41 -07:00
Mario Melara	08a9d80ebc	Changed platform to py_platform to avoid name collisions. The naming collisions resulted in an error on linux machines	2016-05-30 13:07:20 -07:00
Mario Melara	f96c979024	Added a conditional to check if package is external	2016-05-30 13:05:49 -07:00
Todd Gamblin	e8b4d5fb6f	Performance boost: reduce instantiations of re.Scanner - Lexer is the same for every Spec parser in spack, so don't build it every time. - This improves time to import package.py files a lot, as a Lexer doesn't have to be constructed for every spc in the packages. - To concretize dealii: - Before: ~20 sec - After: ~6 sec	2016-05-28 23:05:23 -07:00
Mario Melara	22ca72e7b9	Added conditional skipIf to test_external_modules, darwin machines don't have tcl modules so skip this test and let user know why	2016-05-28 12:40:29 -07:00
Mario Melara	69585cb6e3	Added elcap compilers	2016-05-28 12:39:43 -07:00
Mario Melara	f0a9c45207	Adding external to mock config	2016-05-28 10:13:57 -07:00
Mario Melara	98a4a9f2cc	Adding test for external modules	2016-05-28 10:13:22 -07:00
Mario Melara	becec8ac7e	Added external module check in normalize to avoid infinite loop	2016-05-28 10:12:53 -07:00
Gregory Becker	9dad7c2ace	re-merged mainline develop	2016-05-27 13:13:19 -07:00
Gregory Becker	f49644cdea	Fixed typo in linux platform	2016-05-27 12:37:58 -07:00
Gregory Becker	023504ed64	Fixed the external modules bug	2016-05-27 12:26:59 -07:00
Todd Gamblin	285646bbfa	Merge pull request #981 from epfl-scitas/tests/unit_test_for_968 find : add unit tests	2016-05-27 11:00:45 -05:00
Todd Gamblin	2f18a34458	Merge pull request #989 from LLNL/features/cflags-documentation updated documentation for cflags PR	2016-05-27 10:59:40 -05:00
Gregory Becker	a2f90453f4	Fixed backwards compatibility for compilers.yaml config file	2016-05-26 20:30:05 -07:00
Mario Melara	9c1da4fa4c	Corrected parantheses wrapping	2016-05-26 13:58:17 -07:00
Gregory Becker	189e8b3f34	fixed compiler config init logic	2016-05-26 13:17:01 -07:00
Gregory Becker	88bec814eb	Allow 'arch=' syntax for specs to allow copying from output	2016-05-26 12:10:41 -07:00
Gregory Becker	c0661744cc	fixed compatibility work	2016-05-26 11:38:40 -07:00
Gregory Becker	b968603a57	made yaml format backwards compatible	2016-05-26 11:14:05 -07:00
Mario Melara	3b675d8b70	Changed comparison operator so that we don't get caught in an infinite loop	2016-05-26 11:09:14 -07:00
Gregory Becker	c30fe932d9	fixed mock config to use truncated versions of linux distro versions	2016-05-25 16:34:45 -07:00
Gregory Becker	8f99334f11	Fixed test config to work on yosemite	2016-05-25 16:06:14 -07:00
Todd Gamblin	76d42b5200	Merge pull request #982 from trws/rust Rust	2016-05-25 15:15:51 -05:00
Gregory Becker	0f40174723	added test platform	2016-05-25 12:28:59 -07:00
Gregory Becker	3a68dd2011	(hopefully) final fixes of the merge	2016-05-25 12:22:16 -07:00
Gregory Becker	74dc7ffe4d	updated documentation for cflags PR	2016-05-25 10:56:12 -07:00
Peter Scheibel	dd26c0bbcc	merge from develop	2016-05-24 18:56:44 -07:00
alalazo	84707ed926	modules : it's possible to add suffixes to module files based on constraint	2016-05-24 15:23:52 +02:00
Gregory Becker	513aae5ef8	fixed bug where earlier test was blowing away environment, causing an error on which('modulecmd')	2016-05-23 17:39:06 -07:00
Gregory Becker	1da6bbd146	Fixed a couple more bugs	2016-05-23 17:25:54 -07:00
Gregory Becker	d438ea0880	'Ugly merge because I mishandled git Merge branch 'save' into features/newarch	2016-05-23 16:57:54 -07:00
Gregory Becker	d7612e7aaa	Fixed errors caught by spec and concretize tests	2016-05-23 16:54:41 -07:00
Mario Melara	6c352132d0	Started writing documentation for architecture. Might need a couple more drafts	2016-05-23 14:28:00 -07:00
alalazo	0890ac4507	modules : explicit module file load from configuration files	2016-05-23 10:54:48 +02:00
Todd Gamblin	3ab56a188e	Fixes #980 : really slow spack spec performance - `spack spec dealii` now takse seconds rather than 18 minutes. - Slow hash (`dag_hash`) was accidentally inserted into the fast hash (`__hash__`). - Do not put the slow hash in the fast hash.	2016-05-22 18:33:13 -07:00
Tom Scogland	9bd4bc02d6	fixing warning for package fetch	2016-05-22 11:16:00 -07:00
Todd Gamblin	d087086581	update documentation.	2016-05-21 14:33:05 -07:00
Mario Melara	c3767d593d	compiler list is sorted in descending order, in order to get most up to date version we check from the beginning of the list	2016-05-20 15:48:13 -07:00
alalazo	7303c387e8	autopep8 : fixed style	2016-05-20 10:34:11 +02:00
alalazo	b485ca8198	find : added unit tests, exits with 1 if -E and -e are given	2016-05-20 10:32:46 +02:00
Mario Melara	175a042fd3	Changed rpaths method so that it only grabs rpaths using the compiler module name instead of PrgEnv-x module name	2016-05-19 16:42:13 -07:00
Mario Melara	36450b9bc9	Adding link_paths to craype compilers	2016-05-19 14:25:50 -07:00
Gregory Becker	19c8a52fe1	fixed spec syntax test	2016-05-19 09:53:49 -07:00
Brett Viren	126fc10b9d	Remove `view print` for now.	2016-05-19 08:36:18 -06:00
Gregory Becker	63459ab0c7	Fixed some of the bugs	2016-05-18 18:21:52 -07:00
Gregory Becker	01d5ffcd87	Fixed the first set of merge bugs	2016-05-18 17:42:11 -07:00
Mario Melara	16431f7a4c	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-05-18 17:26:30 -07:00
Mario Melara	b25da51638	Changed unsatisfiable architecture test	2016-05-18 17:26:06 -07:00
Mario Melara	6926f4d0da	Changed arch tests to new spec target= os=	2016-05-18 17:23:10 -07:00
Gregory Becker	5417f1cdc6	more merge work	2016-05-18 17:21:03 -07:00
Gregory Becker	b1e5eafb80	more merge work	2016-05-18 17:18:26 -07:00
Gregory Becker	deb5011d08	more merge work	2016-05-18 17:14:16 -07:00
Mario Melara	b4b7942230	Moved searching of flags into get compilers in compilers_for_spec	2016-05-18 17:07:23 -07:00
Mario Melara	9f8ff32bcc	Got rid of ifdefs, changed parameters for Compiler: added kwargs	2016-05-18 17:05:11 -07:00
Mario Melara	faa0f2a13c	got rid of ifdef	2016-05-18 17:01:59 -07:00
Gregory Becker	80310a3b7c	Finished merge on these files	2016-05-18 16:50:50 -07:00
Gregory Becker	9f59c128be	Partial merge of mainline develop	2016-05-18 15:13:40 -07:00
Tom Scogland	a1f8cc2817	peren-nesting fix in spec	2016-05-18 14:24:16 -07:00
Tom Scogland	29635b7bbd	initial docs for find and flake8 cleanup	2016-05-18 14:04:39 -07:00
alalazo	23c7089789	fixes #967 , flake8 approved	2016-05-18 11:52:27 +02:00
alalazo	fcc30cbf30	fixes #967	2016-05-18 11:48:03 +02:00
Todd Gamblin	502420ceff	Merge branch 'features/cflags' into develop Conflicts: lib/spack/spack/cmd/find.py var/spack/repos/builtin/packages/ghostscript/package.py	2016-05-17 16:44:54 -07:00
Todd Gamblin	9d584d0c47	Tag Spack version 0.9 - Tagging a version to include all that's happened since 0.8.17 - This is in anticipation of merging `features/cflags` and `features/newarch`, which will break the spec format. - 1.0 will likely come after those.	2016-05-17 16:06:43 -07:00
Todd Gamblin	15e9d5f96e	Merge pull request #868 from trws/explicitly-installed track whether a package was installed "explicitly"	2016-05-17 14:28:17 -07:00
Todd Gamblin	138307dd0c	Merge pull request #955 from trws/lua-rework complete lua rework	2016-05-17 13:21:51 -07:00
Erik Schnetter	fcc4c1b2f2	Remove duplicate providers that can concretize to the same result Patch generously provided by @becker33. Closes #928.	2016-05-17 15:13:28 -04:00
Gregory Becker	0fd9cdb861	Fixed config tests for new compiler config format	2016-05-16 09:56:07 -07:00
Gregory Becker	7705603f73	Added more compilers to mock packages tests	2016-05-16 09:43:46 -07:00
Tom Scogland	8859a09cd2	handle explicit when requesting to install already installed packages	2016-05-16 08:08:40 -07:00
Tom Scogland	4acdfeae61	track whether a package was installed "explicitly" Adds a new attribute in the database to track whether a package was installed explicitly or not, where explicitly is the user running `spack install <package>` and implicitly is it being installed as a dependency. It also adds arguments to `spack find` to find these packages such that it should be possible to query the packages that were installed implicitly and are not currently depended upon any longer.	2016-05-16 08:08:40 -07:00
Brett Viren	1bbe6409e1	Merge remote-tracking branch 'upstream/develop' into view-fix-merge	2016-05-16 10:09:31 -04:00
Brett Viren	77a34ebdf9	flake8-clean.	2016-05-16 10:08:59 -04:00
Tom Scogland	dacedfcc0e	formatting to appease flake8	2016-05-16 05:12:30 -07:00
Tom Scogland	c6524d0311	environment: fixed comment and default separator	2016-05-15 09:50:21 -07:00
Tom Scogland	577657b3f7	go rework This commit includes: * a new go package that uses gccgo to bootstrap the go toolchain * env support added to Executable * a new Go fetch strategy that uses `go get` to fetch a package and all of its deps * A platinum searcher package that leverages the new go package and fetch strategy	2016-05-14 22:35:55 -07:00
Tom Scogland	a2197f3a41	yet more sacrifices to the god of short-lines	2016-05-14 17:51:58 -07:00
Tom Scogland	df30182a10	appeasing flake8 in environment	2016-05-14 17:39:59 -07:00
Tom Scogland	12e36ee0e7	fix merge error	2016-05-14 16:20:45 -07:00
Tom Scogland	b5979b13e3	complete lua rework, also module path fix This is a complete rework of the lua package, it also allows the environment modification classes to handle paths that are not separated by colons, and uses the support for same in TCL modules as well. The biggest difference is the handling for lua extension packages, which now have their paths set correctly by the lua parent package, and have access to both lua and luarocks as installation tools. See the luaposix package for what should be required for most lua packages after this.	2016-05-14 16:18:26 -07:00
Elizabeth Fischer	efa506b235	Preparing spack setup command for merge. Try this out for a while...	2016-05-14 17:09:11 -04:00
Brett Viren	b3ede099e2	Document command.	2016-05-14 13:15:25 -04:00
Brett Viren	c98afe2205	Pick a better name for the 'spec' parameters.	2016-05-14 13:14:51 -04:00
Brett Viren	8ddc1f8977	Move from str.format() to string.Template.	2016-05-14 09:11:04 -04:00
Gregory L. Lee	e9b71872a8	addressed PR#946 comments from @adamjstewart	2016-05-13 15:16:07 -07:00
Mario Melara	fce6ecb05c	Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers	2016-05-13 15:04:06 -07:00
Gregory Becker	f43cab0951	fixed pkgconfig issue	2016-05-13 14:39:20 -07:00
Gregory L. Lee	b8a91db089	Intel software packages and license enhancements	2016-05-12 20:04:45 -07:00
Gregory Becker	4c9dd028d2	Fixed error causing hang in env/cc	2016-05-12 17:20:48 -07:00
Todd Gamblin	5e13bba068	Fix #941 : add copyright to new package files. - also reworded the boilerplate a bit.	2016-05-12 10:30:13 -07:00
Denis Davydov	68c681bb78	document blas and lapack usage in packages	2016-05-12 08:59:17 +02:00
Todd Gamblin	e7ced54369	Correct LLNL LGPL license template for clarity.	2016-05-11 21:22:25 -07:00
Todd Gamblin	14fe0b8ad2	Merge pull request #558 from adamjstewart/features/pgi Add Licensed Software Support	2016-05-11 17:17:47 -07:00
Gregory Becker	45bf93405a	Changed spec syntax for new parts from modules feature	2016-05-11 16:23:13 -07:00
Gregory Becker	2e1810e3a7	re-merging develop	2016-05-11 15:26:09 -07:00
Gregory Becker	566fec4015	Fixed variants in new format and removed print statements from debugging	2016-05-11 14:56:41 -07:00
Gregory Becker	0b5836cfce	Fixed flipped conditional in satisfies	2016-05-11 10:51:52 -07:00
Adam J. Stewart	c043275f1b	Final flake8 changes	2016-05-11 11:46:41 -05:00
Todd Gamblin	9cf5404bb7	Merge pull request #937 from davydden/features/unit_tests Features/package_test	2016-05-11 09:42:00 -07:00
Adam J. Stewart	5879f8207f	Flake8 formatting changes	2016-05-11 11:32:08 -05:00
Adam J. Stewart	ee7ec4fa66	Move all licensing support to pre/post_install hooks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	19f4b27fd2	Add documentation for packaging of licensed software	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8bcb812529	Allow multiple license symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	2a11cb8b76	Use global licenses with local symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	6906911e85	Allow license files to use different symbols for comments	2016-05-11 11:32:08 -05:00
Adam J. Stewart	b63d11d5b0	Formatting consistency	2016-05-11 11:32:07 -05:00
Adam J. Stewart	5cb45c253e	Bug fix	2016-05-11 11:32:07 -05:00
Adam J. Stewart	1b997f10a8	Add set_up_license function	2016-05-11 11:32:07 -05:00
Adam J. Stewart	8cba8d6d1d	Add default global variables for licensing information	2016-05-11 11:29:30 -05:00
Todd Gamblin	fd5d89b61c	Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config	2016-05-11 08:59:23 -07:00
alalazo	bb4b6c8ee2	flake 8 : fixed checks	2016-05-11 17:02:36 +02:00
Denis Davydov	eba264fcd0	fix formatting	2016-05-11 16:11:34 +02:00
alalazo	78ae5d7723	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config Conflicts: lib/spack/spack/config.py	2016-05-11 16:11:19 +02:00
alalazo	22bb0562fe	Revert "flake8 : fixed all issues?" This reverts commit `71e49e289a`.	2016-05-11 16:09:47 +02:00
alalazo	b215b19cae	modules : added docs	2016-05-11 15:42:48 +02:00
Denis Davydov	809ded74c9	add functions for simple unit tests; refactor openblas to use them	2016-05-11 15:10:13 +02:00
Benedikt Hegner	0b7b25487f	improve error message for wrong config section names	2016-05-11 13:29:27 +02:00
Todd Gamblin	6d6eb0f2d1	Remove config.py from flake checking for now.	2016-05-11 02:32:13 -07:00
Todd Gamblin	fc8d18ebdc	Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config	2016-05-11 02:31:20 -07:00
Todd Gamblin	9030541e4b	Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages QA : make qa checking less painful	2016-05-11 02:26:07 -07:00
Benedikt Hegner	c1e6b52184	first round of coding rules	2016-05-11 00:28:12 +02:00
Benedikt Hegner	05b6c3f8cf	add test for list parameters	2016-05-11 00:14:24 +02:00
Benedikt Hegner	6e462abb4d	hmm... test before commit	2016-05-10 23:31:29 +02:00
Benedikt Hegner	5d477bc956	fix setting config for list parameters	2016-05-10 23:19:30 +02:00
Todd Gamblin	98faee1d5c	Minor tweaks to `flock` docs.	2016-05-10 11:19:17 -07:00
Todd Gamblin	a49662276d	Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock	2016-05-10 11:10:07 -07:00
Luca Heltai	4cb91d6f7b	Added documentation on lockf/flock.	2016-05-10 19:46:24 +02:00
alalazo	7d74e209f3	qa : this should still fail due to F821	2016-05-10 19:20:26 +02:00
alalazo	979b53cab6	qa : modifying 2 packages and a framework file just for the sake of it	2016-05-10 18:33:07 +02:00
alalazo	71e49e289a	flake8 : fixed all issues?	2016-05-10 17:19:22 +02:00
alalazo	c3f3f26632	modules : added warning if a user tries to add prerequisite with dotkit	2016-05-10 16:16:50 +02:00
alalazo	0b7c673205	modules : changed syntax for environment modifications	2016-05-10 15:48:37 +02:00
alalazo	f8f71b1c2c	modules : prefix_inspections moved to modules.yaml	2016-05-10 13:37:03 +02:00
alalazo	9eee71edf7	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-05-10 11:13:19 +02:00
Todd Gamblin	42edb6840e	Merge pull request #905 from adamjstewart/features/rpath_flag Allow compilers to specify their own rpath linking flags	2016-05-10 01:56:49 -07:00
Todd Gamblin	a2528a86b4	Merge pull request #692 from mathstuf/quoted-command-lines executable: quote arguments	2016-05-10 01:42:26 -07:00
Todd Gamblin	8ce45d2161	Merge pull request #775 from epfl-scitas/fixes/config_update fix: proper update of config file	2016-05-10 01:35:56 -07:00
Todd Gamblin	57e495943f	Merge pull request #757 from glennpj/extend_r Make R extendable	2016-05-10 01:30:13 -07:00
Todd Gamblin	69f6baf28e	Merge pull request #842 from hegner/compiler_lookup_order Bugfix - preserve lookup order in PATH when invoking 'spack compiler add'	2016-05-10 01:11:18 -07:00
Todd Gamblin	cbfba84aa2	Merge pull request #849 from brettviren/bugfix/share-pkgconfig Add to sub dirs checked for pkg-config files.	2016-05-10 00:59:01 -07:00
Gregory Becker	c6ac709d70	WIP fixing all the things that broke when I changed the anonymous spec names	2016-05-09 17:06:21 -07:00
Gregory Becker	a7026da45c	cleanup	2016-05-09 16:24:26 -07:00
Gregory Becker	222c84d9be	Changed anonymous specs to have name=None instead of empty string	2016-05-09 16:22:17 -07:00
Adam J. Stewart	6665a996e6	Add documentation for rpath_flag handling	2016-05-09 17:04:14 -05:00
Adam J. Stewart	58733eb26a	Comment change	2016-05-09 16:59:39 -05:00
Adam J. Stewart	b211829fb1	Testing typo	2016-05-09 16:59:39 -05:00
Adam J. Stewart	4473311bdb	Allow compilers to specify their own rpath linking flags	2016-05-09 16:59:39 -05:00
Denis Davydov	7a2d65967c	wrap tty.die to 80 chars	2016-05-09 22:04:34 +02:00
Todd Gamblin	73107d6b0f	cleanup	2016-05-09 03:40:34 -07:00
Todd Gamblin	0c853ac3ea	Make _hash private to discourage access; fix dag_hash length handling.	2016-05-09 03:39:08 -07:00
Todd Gamblin	7151fd8836	Restore `cc` from mainline; clean up some cflags stuff.	2016-05-09 03:37:27 -07:00
Brett Viren	f1900f6a7b	Add a 'print' view allowing genreation of arbitrary strings based on format using package/spec parameters.	2016-05-08 10:25:21 -04:00
Brett Viren	2d1430da13	Address all coments in @trws's latest comment in PR #869 . I addressed them by factoring the code better to follow the visitor pattern. This will allow actions to be easily added in the future. These may not even be file sytsem views. One could add actions to generate shell init scripts, JSON DAG-dumpers, GraphViz DOT file generators, etc (yes, some of these are alread in there - just to give the idea). Also added is a top-level test $ source share/spack/setup-env.sh $ ./share/spack/examples/test_view.sh Read the top of that script first.	2016-05-07 18:24:24 -04:00
Gregory Becker	d392056457	Cleaning up print statements for debugging	2016-05-06 18:05:30 -07:00
Gregory Becker	1523ebe9f7	Working properly to display but not reuse old specs from yaml	2016-05-06 18:03:43 -07:00
Gregory Becker	06b9433351	Fixed previous commit	2016-05-06 12:35:43 -07:00
Gregory Becker	bc087cfefb	Fixed database to account for hashes when reading install records	2016-05-06 12:28:46 -07:00
Gregory Becker	9f37e4c907	Made spec hashes immutable once concrete -- improved	2016-05-06 12:05:51 -07:00
Gregory Becker	addcde4f35	Made spec hashes immutable once concrete	2016-05-06 12:05:27 -07:00
Gregory Becker	2f821b9e9b	temp	2016-05-05 18:13:56 -07:00
Gregory Becker	9a39ccea8f	Every old spec has empty compiler flags	2016-05-05 17:49:30 -07:00
Gregory Becker	1bb7bfaf7f	Versioning the database -- automatic reindex	2016-05-05 17:38:51 -07:00
Gregory Becker	3fc1344865	temp	2016-05-05 17:11:09 -07:00
Gregory Becker	11b62114bb	versioning the database	2016-05-05 16:58:00 -07:00
Elizabeth Fischer	6a48385111	Keep users environment in the spack setup script (spconfig.py). This is important to avoid breaking things that require module loads to work; for example, non-activate Python packages.	2016-05-05 17:48:24 -04:00
Todd Gamblin	9fb1a9537d	Merge branch 'develop' into features/cflags	2016-05-05 10:49:15 -07:00
Denis Davydov	c37ea9aff5	document usage of compiler flags properties	2016-05-05 11:56:58 +02:00
Denis Davydov	f84f04591b	substitute cxx14_flag by a property with the same name to be overridden in derived classes	2016-05-05 10:48:31 +02:00
Denis Davydov	c6fb6bde40	remove cxx11_flag from Compiler as it is now substituted by a property with the same name	2016-05-05 10:47:02 +02:00
Denis Davydov	ddcb97f953	add a temporary Nag.cxx11_flag property	2016-05-05 10:44:41 +02:00
Denis Davydov	473a5542be	compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class	2016-05-05 10:44:41 +02:00
Denis Davydov	30b65d3114	fix comment in Compiler class	2016-05-05 10:44:41 +02:00
Denis Davydov	e28ca3922f	compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag	2016-05-05 10:44:41 +02:00
Denis Davydov	d5a760776a	compiler: add default implementation of openmp_flag() and css11_flag()	2016-05-05 10:44:41 +02:00
Denis Davydov	6a418cfb8d	compiler: simplify Clang.is_apple	2016-05-05 10:44:41 +02:00
Denis Davydov	f2f1c49c90	compilers: one more missing import statement	2016-05-05 10:44:41 +02:00
Denis Davydov	07fd0ccc9a	compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version	2016-05-05 10:44:41 +02:00
Denis Davydov	592045cd54	compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version	2016-05-05 10:44:41 +02:00
Denis Davydov	3cd3052c56	compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag()	2016-05-05 10:44:41 +02:00
Denis Davydov	c078deaab1	compilers: add missing import statements	2016-05-05 10:44:41 +02:00
Denis Davydov	9776dc0433	compilers: add openmp_flag() method	2016-05-05 10:44:41 +02:00
Denis Davydov	2cdfe14e5a	compilers: make sure cxx11_flag() is defined for all compilers	2016-05-05 10:44:41 +02:00
Todd Gamblin	13e52962ee	Merge pull request #802 from gartung/std-cpp14 Handle c++11 and c++14 correctly	2016-05-05 01:41:55 -07:00
Gregory Becker	90b7b7ba5c	Reworked compiler finding/storing/format to allow for multiple compilers with the same spec for different operating systems. TODO: fix config tests. All others up to date	2016-05-04 21:42:59 -07:00
Elizabeth F	2243de9e2f	Make quiet mode default for spack spconfig	2016-05-04 23:39:27 -04:00
Denis Davydov	c3317819cb	mpi: add self.spec.[mpicc\|mpicxx\|mpifc\|mpif77] to avoid hardcoding MPI wrappers names	2016-05-04 10:37:52 +02:00
Brett Viren	346f102234	Bug fixes, tty tweaks.	2016-05-01 17:13:44 -04:00
Brett Viren	8c140f4725	Change the action from parameter to subcommand to fit Spack convention.	2016-05-01 17:13:43 -04:00
Brett Viren	a2b9a000dc	Add add removal and status actions in addition to link and add various ways to filter what is done.	2016-04-29 15:12:09 -04:00
Gregory Becker	4ba73dac34	Unit tests for cflags PR	2016-04-28 14:01:38 -07:00
Todd Gamblin	8cd13d4b35	Make arch command print out the platform.	2016-04-28 12:49:21 -07:00
Brett Viren	49956faab9	First try to make file system views of specs.	2016-04-28 14:54:14 -04:00
Gregory Becker	3b84345b77	Changed yaml format for node_dicts to mitigate future incompatibilities	2016-04-28 11:05:59 -07:00
Todd Gamblin	c35994d5bf	Merge pull request #850 from mathstuf/partial-downloads fetch_strategy: download to temporary files	2016-04-28 10:22:43 -07:00
Gregory Becker	ae5198e5e7	Merged in current develop to cflags 042716	2016-04-27 19:38:51 -07:00
Elizabeth F	4d466fe879	spack setup: Fix broken module convenience settings.	2016-04-27 20:57:04 -04:00
Todd Gamblin	8773a0b747	Merge pull request #847 from epfl-scitas/features/test_install_with_time test-install command : added elapsed time + xml is prettyprinted	2016-04-27 17:32:21 -07:00
Ben Boeckel	e53571d2f0	fetch_strategy: download to temporary files This supports graceful recovery if spack is killed via a signal (e.g., SIGINT) while downloading a file. Fixes #287.	2016-04-27 14:49:27 -04:00
Brett Viren	b5ebd12fe2	Add to sub dirs checked for pkg-config files. This lets me build against the pure-include package Eigen.	2016-04-27 13:45:05 -04:00
Massimiliano Culpo	b1ba869b37	test-install : fixed error in logic exposed by tests	2016-04-27 19:28:13 +02:00
Massimiliano Culpo	4846ab70d8	test-install : python 2.6 compatibility	2016-04-27 18:21:36 +02:00
Massimiliano Culpo	ec5bb88820	test-install : unit tests (hopefully) fixed for real	2016-04-27 18:06:41 +02:00
alalazo	42fab1591d	test-install : fixed unit tests	2016-04-27 17:19:03 +02:00
alalazo	12dbd65f4c	test-install : first draft that works	2016-04-27 13:56:32 +02:00
Benedikt Hegner	b7c064142e	preserve lookup order in PATH when invoking 'spack compiler add'	2016-04-27 01:23:53 +02:00
Ben Boeckel	603467785b	Compiler find docs (#831 ) * docs: mention `spack compiler find` * docs: fix some weird wording.	2016-04-26 10:00:54 -07:00
alalazo	99b52e6e71	test-install : wip to add other information	2016-04-26 16:41:33 +02:00
Ben Boeckel	ff9145f8a5	executable: quote arguments This allows command line arguments with spaces to be shown. The quoting madness is because a single quote cannot appear within a single quoted argument on the command line. To do so, you have to stop the single quote argument, double quote the single quote, then open the single quote again: $ echo 'before'"'"'after' before'after Fixes #174	2016-04-25 09:44:17 -04:00
Ben Boeckel	ed16bd133a	compiler: add "find" subcommand (#818 ) And make "add" an alias to it. Fixes #713.	2016-04-23 13:34:51 -07:00
alalazo	67a01ef2ee	tcl : extended conflict to be an array of strings	2016-04-22 10:50:24 +02:00
Todd Gamblin	fa02f94ca4	Regression test for not adding RPATHs with `ld -r` (#809 , #821 ) - ld -r is only broken with rpaths on OSX; this tests that specific case. - test should still work cross-platform.	2016-04-21 23:12:33 -07:00
Denis Davydov	a0989ad672	minor cleanup of environment-modules documentation (#814 ) * minor cleanup of environment-modules documentation * environment modules: update usage instructions	2016-04-21 19:26:19 -07:00
Patrick Gartung	d5d1e89cbd	remove use of unknown environment variable in lib/spack/env/cc (#821 )	2016-04-21 19:15:54 -07:00
Adam Lyon	e92da6a6ba	Handle c++11 and c++14 correctly	2016-04-19 16:52:08 -05:00
alalazo	5deaaa278c	modules : added a few unit tests	2016-04-19 14:25:12 +02:00
alalazo	bce276d573	fix : missing autoload, failing validation	2016-04-18 17:51:53 +02:00
alalazo	50b148ca22	modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498	2016-04-18 13:22:50 +02:00
alalazo	18a241fe21	modules : added hook for module specific extensions	2016-04-18 13:22:31 +02:00
alalazo	c69acfa5c8	naming work correctly	2016-04-18 13:22:04 +02:00
alalazo	00f44d558a	modules : started working on naming schemes and conflict	2016-04-18 13:21:41 +02:00
alalazo	1b4c4be151	modules : category is a single word (as I am not sure how dotkit will react to spaces)	2016-04-13 12:44:51 +02:00
alalazo	c422ce7c1d	modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules	2016-04-13 11:26:22 +02:00
alalazo	fcd58a95dd	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-04-13 10:49:00 +02:00
alalazo	27280ea8be	fix : added regression tests	2016-04-12 17:28:23 +02:00
alalazo	80678b2188	fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774	2016-04-12 16:54:51 +02:00
alalazo	41f365112c	modules : added provenance comment in tcl header	2016-04-12 09:13:50 +02:00
alalazo	3959ca6270	modules : added possibility to blacklist or whitelist module files	2016-04-11 18:10:06 +02:00
alalazo	0e2b1359e3	modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies	2016-04-11 11:01:47 +02:00
Massimiliano Culpo	a5a5dbc408	tcl module file : added new-lines in autoload (per @glennpj bug report)	2016-04-10 13:21:41 +02:00
Mario Melara	3a281b2399	Commented out the add_x_from_string methods since we don't need to worry about it. Also, changed the way architecture is set. Todd wanted to have users be able to input just frontend and/or backend in the architecture spec. This will be able to parse those inputs.	2016-04-08 12:46:44 -07:00
Mario Melara	01a36ab333	Changed the logic of concretize. We don't have to worry about whether the part of the spec is a string since any string parsed is made into an object via the Arch constructor. Any dependencies will take the root arch spec as well	2016-04-08 12:44:27 -07:00
Mario Melara	5bcd1e7ccd	If we already have the name and the platform, then we should probably go ahead and concretize it in the constructor. Else leave it as None and concretize it later.	2016-04-08 12:43:08 -07:00
Mario Melara	618b3f5f2d	Changed default to default_target so the tests can pass	2016-04-08 11:18:30 -07:00
Mario Melara	277efc1dfb	Added test that works on every type of combination the user could possibly enter for arch spec	2016-04-08 11:17:56 -07:00
Matthew LeGendre	1af88be371	Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list.	2016-04-08 11:06:14 -07:00
Mario Melara	0d1a1b7526	Changed _set_architecture so if user inputs only the target, then os is None. This prevents the os being referenced before assignment error	2016-04-08 10:29:37 -07:00
Mario Melara	6ff6c805af	Assigned self.front_os, and back_os to self.default. Helps with testing. If we're on a darwin or linux machine, chances are there is no back end or front end operating system, but rather than have those as None, I just assign them the default which is detected via python platform.	2016-04-08 10:28:30 -07:00
Mario Melara	7b777568ed	Added new concretization of architecture tests, test each combination of user input to make sure the correct os and target are chosen	2016-04-07 14:38:43 -07:00
Mario Melara	0ad317213c	Changed architecture parser so that if user just enters in frontend or backend, then both the os and target will take those names. In the concretize method the frontend target/os and backend target/os will be picked to match each other	2016-04-07 14:38:04 -07:00
Mario Melara	07df403203	Cleaned up the concretize_architecture method by removing commented out code	2016-04-07 14:37:00 -07:00
Mario Melara	143a4d7f76	Changed default to default_target, also added frontend and backend to operating system	2016-04-07 14:36:26 -07:00
alalazo	1714f410f0	Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config	2016-04-07 10:48:16 +02:00
alalazo	7dc1524c08	modules : added stub for dotkit (to be verified)	2016-04-07 10:48:05 +02:00
Glenn Johnson	b19d6ab9c5	Check for non-numeric bits in the stem.	2016-04-06 19:08:01 -05:00
Glenn Johnson	fbabfc593d	Make R extensable and add a couple of packages for verification. Added R as a build system so that the create template will have the correct configure line. Added a regex for version parsing as the R URLs are a little odd.	2016-04-06 16:44:22 -05:00
Mario Melara	99117cbc90	pulled from current repo the build_environment.py. Added module loading methods from our cray port	2016-04-06 14:07:22 -07:00
Mario Melara	918ad28a93	Changed all target values to architecture. Also added a sort_key method so that older architecture specs can be sorted with the newer ones	2016-04-06 13:58:29 -07:00
Massimiliano Culpo	4001663982	leftover from cherry-pick	2016-04-06 22:19:07 +02:00
alalazo	73b6214a13	module files : proper cleanup on uninstall fixes #216 Conflicts: lib/spack/spack/test/database.py	2016-04-06 22:10:04 +02:00
Mario Melara	749508af01	Found loops calling all_compilers that were always reading in the config file which lead to a slowdown, the fix is to cache the config file so we don't waste time re-reading the config file in again.	2016-04-06 12:05:29 -07:00
Mario Melara	3bf75fab3f	Cleaned up architecture. Changed operating_system from dictionary method	2016-04-06 12:03:26 -07:00
alalazo	21b7734d92	modules : removed debug leftover	2016-04-06 17:08:31 +02:00
alalazo	7904f75782	modules : all the other strings are lower case	2016-04-06 17:05:47 +02:00
alalazo	e4cfe74887	modules : customization based on specs	2016-04-06 16:42:56 +02:00
alalazo	e993c17f89	modules : added environment modifications from configuration file	2016-04-06 14:02:27 +02:00
alalazo	d636b4fdde	modules : more sensible name to blacklist environment variables modules : added skeleton to permit modifications based on specs	2016-04-06 13:42:47 +02:00
Todd Gamblin	e104592e1f	Merge pull request #738 from eschnett/eschnett/cleanup-cc Clean up cc script	2016-04-05 10:50:45 -07:00
alalazo	670cb423f9	modules : iterating on all the dependencies doesn't reuire try/except KeyError	2016-04-05 18:44:40 +02:00
alalazo	5da37c573f	modules : don't pass stream around	2016-04-05 18:41:38 +02:00
alalazo	2968b60ee0	module file : added autoload and prereq	2016-04-05 18:03:09 +02:00
alalazo	ca7d701007	module file : all the dependencies can affect the run_time environment, not only extendees	2016-04-05 16:10:04 +02:00
alalazo	c352249e30	EnvModules : narrowing the type of exceptions being "handled"	2016-04-05 14:55:05 +02:00
Erik Schnetter	4ce03b75bc	Correct typo	2016-04-05 07:42:23 -04:00
alalazo	d546d828d3	module file : added filtering based on environment variable name	2016-04-05 13:20:28 +02:00
Mario Melara	9bfc83ac5c	Changed so that py_platform.dist() grabs the major version number.	2016-04-04 15:36:10 -07:00
Todd Gamblin	0296f96c7b	Resolves #739 . Don't call setup_dependent_* for package itself.	2016-04-04 13:56:15 -07:00
Mario Melara	6d73c86209	Gives error on cori that [PrgEnv-xx, gcc/x.x.x] is not part of the schema. Changed it to oneOf : type : array to get rid of the error.	2016-04-04 13:45:15 -07:00
Mario Melara	9c071ea40d	Changed modulecmd parameters. return_oe is not one of the parameters in the mainline spack repo. Changed the args to the appropriate ones in the new spack	2016-04-04 13:44:24 -07:00
Erik Schnetter	0ff059e388	Clean up comments and output messages	2016-04-04 16:00:09 -04:00
Erik Schnetter	83d6e04d39	Convert `=` to `==` in tests; untabify	2016-04-04 15:38:21 -04:00
Erik Schnetter	7bc28cc334	Clean up cc script	2016-04-04 14:33:48 -04:00
Todd Gamblin	5084130e71	Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules Added Environment Modules	2016-04-04 10:41:54 -07:00
Todd Gamblin	c7b11360e9	Merge pull request #732 from citibeth/efischer/160403-ConditionalExtendsBugfix [Needs Review] Fix conditional extends (BUG #683)	2016-04-04 10:21:26 -07:00
Todd Gamblin	a6c1cfe037	Merge pull request #670 from epfl-scitas/uninstall_improved enhancement : recursive uninstallation of dependent packages	2016-04-04 10:04:14 -07:00
Todd Gamblin	bb968fc5a2	Fix #620 , Resolve #664 . Fix issues with build environment. - Also added better regression tests for build environment.	2016-04-04 02:52:38 -07:00
alalazo	f40b0f52e0	uninstall : updated documentation and error messages	2016-04-04 10:59:01 +02:00
alalazo	401dcb3635	uninstall : renamed `--recursive` to `--dependents`	2016-04-04 10:28:47 +02:00
Elizabeth F	2f4d8a634d	Fix conditional extends (BUG #683 )	2016-04-03 21:41:46 -04:00
citibeth	281835887a	Added documentation for recursive modules	2016-04-01 22:54:49 -04:00
Elizabeth F	c6d8208150	Added recursive module loading	2016-04-01 22:54:42 -04:00
citibeth	459aab628d	Added documentation for installing Environment Modules with Spack.	2016-04-01 16:00:58 -04:00
Peter Scheibel	9eb314fcaa	merge from develop	2016-03-31 12:56:34 -07:00
Todd Gamblin	220c72d67f	Merge branch 'features/blas-lapack-hardening' into develop	2016-03-31 11:37:09 -07:00
Todd Gamblin	a670408617	Quick fix for pkg diff.	2016-03-31 11:34:27 -07:00
Tom Scogland	5d2151ed64	reworked to deal with stage.path as property This version actually pulls the path through the package to deliver it to each stage on creation when passed through the command. This is necessary due to the new StageComposite class that makes setting the path directly on the stage impractical, it also takes the logic out of package for the most part, which seems like an improvement.	2016-03-31 10:20:55 -07:00
Tom Scogland	63f824b218	add a path argument to the stage command Allow users to use spack to stage a, potentially complex, package into a given path. This is nice for packages with multiple resources that must be placed, for example LLVM with all sub-projects.	2016-03-31 09:56:26 -07:00
Massimiliano Culpo	4f6320a7eb	uninstall : added unit tests	2016-03-31 13:22:48 +02:00
Massimiliano Culpo	dd1c667d8d	uninstall : changed error message	2016-03-30 16:10:20 +02:00
Peter Scheibel	a0c42a3fd1	removed stale TODO	2016-03-29 18:58:18 -07:00
Peter Scheibel	c40559433b	added docstring	2016-03-29 18:54:24 -07:00
Peter Scheibel	03d907e1e5	in the case of multiple digests, avoid creating different mirror filenames from run to run (as long as the available digests do not change)	2016-03-29 18:48:25 -07:00
Peter Scheibel	ce4de6227e	(1) access package via spec property (2) use any digest to form archive filename	2016-03-29 18:45:58 -07:00
Peter Scheibel	bee224c567	mirror archive filename now includes the digest type as well as the digest	2016-03-29 18:25:22 -07:00
Gregory Becker	7e9baf9e25	Made architecture test robust for more architectures	2016-03-29 11:23:36 -07:00
Massimiliano Culpo	653d7c5257	uninstall : minor fixes	2016-03-29 17:28:46 +02:00
Todd Gamblin	a05bea7de5	Merge pull request #681 from LLNL/bugfix/complete-restage Fix bug in restage	2016-03-29 05:11:21 -07:00
Todd Gamblin	dfc5cf288c	Fix bug in restage - Restage previously only removed the source directory from the stage. - Now removes any other directories in stage as well.	2016-03-29 04:35:41 -07:00
Todd Gamblin	e1fdd4341b	Merge branch 'eschnett-correct-cc' into develop	2016-03-29 04:16:18 -07:00
Todd Gamblin	f80e839ff4	Handle Darwin's ld -r option properly - ld -r doesn't work with RPATH on OS X. - for GNU ld, the -r option only means 'relocatable', and doesn't affect RPATH. - This adds special handling to omit RPATHs for ld -r on OS X	2016-03-29 03:14:39 -07:00
Todd Gamblin	a14527ec06	Add command to compiler input log.	2016-03-28 15:34:25 -07:00
Massimiliano Culpo	1141f11955	uninstall : added user confirmation	2016-03-29 00:28:02 +02:00
Todd Gamblin	d8579a5b80	Simplify cc: Remove old logic and add better tests. - removed a lot of old logic that was only still needed for tests. - Added better unit tests for dependency RPATH, -L, and -I args - tests now check whether the compiler omits -I args in link mode.	2016-03-28 04:11:54 -07:00
Todd Gamblin	f3dd889d44	Fix bug with lib64 RPATH setting in cc.	2016-03-28 03:51:05 -07:00
Todd Gamblin	eb397b5693	Merge pull request #669 from glennpj/module_format Wrap the long description of an environment module so it is more readable	2016-03-27 17:30:07 -07:00
Todd Gamblin	8b45d6f84f	Merge pull request #658 from davydden/metis_parmetis_darwin metis/parmetis/oce/boost: correct install_name on Darwin via a global tool	2016-03-27 16:10:05 -07:00
Denis Davydov	7eca1284c8	metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function.	2016-03-28 00:22:25 +02:00
Massimiliano Culpo	e0f463c4f9	uninstall : added recursive option	2016-03-27 23:56:41 +02:00
Glenn Johnson	5695e4c03d	Wrap the long description of an environment module so it is more readable.	2016-03-27 15:42:20 -05:00
Todd Gamblin	ec107b290f	Merge branch 'correct-cc' of git://github.com/eschnett/spack into eschnett-correct-cc	2016-03-27 13:38:06 -07:00
Todd Gamblin	e049fc2840	Run post-install hoooks before build stage is removed. - Build will properly fail when post-install hoooks fail. - Post-install hooks have a proper working directory set now.	2016-03-27 11:47:20 -07:00
Todd Gamblin	cde3320582	Add a method to find the containing directory of a library.	2016-03-27 11:32:42 -07:00
Todd Gamblin	dce590fb21	Add a dso_suffix variable to build_environment - Consolidate this in one place so that we don't have to do it in every build. - Will update further once better OS support is committed. Shoudl really be an attribute of the forthcoming `Platform` class.	2016-03-27 11:32:42 -07:00
Todd Gamblin	b0b882cbb3	Speed up directives by skipping debug info in stack traversal. - `caller_locals()` doesn't need debug info, only frame locals. - `get_calling_module()` doesn't either. - Changed calls to `inspect.stack()` -> `inspect.stack(0)`	2016-03-27 11:30:09 -07:00
citibeth	4a6b5d5247	Update to documentation formatting.	2016-03-27 00:14:10 -04:00
citibeth	a1c965d70d	Fixed imports to make ``git spconfig`` work after recent merge from develop.	2016-03-26 20:40:22 -04:00
Peter Scheibel	06c98320a8	handle case where file contents change but resource name does not (e.g. if resource maintainer uses same name for each new version of a package)	2016-03-25 18:38:26 -07:00
Gregory Becker	57ced37229	Fixed a bug in the testing	2016-03-25 17:03:49 -07:00
Gregory Becker	618a9b2d7b	Fixed bug in platform names that I introduced yesterday	2016-03-25 15:41:22 -07:00
Elizabeth F	9889b1a5fe	Added documentation for StagedPackage, etc.	2016-03-25 17:15:15 -04:00
Elizabeth F	8f675b0ee8	Made StagedPackage user-visible.	2016-03-25 17:15:06 -04:00
citibeth	358b387283	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage	2016-03-25 17:14:35 -04:00
citibeth	8019748396	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage # Conflicts: # lib/spack/spack/package.py	2016-03-25 15:36:54 -04:00
Peter Scheibel	bd5abb2922	spacing issue	2016-03-24 19:48:15 -07:00
Peter Scheibel	6423eab917	implemented cache_local method for DIY stage (as a noop)	2016-03-24 19:45:10 -07:00
Peter Scheibel	142d1f5cbc	stage creates cache fetcher with cache object (so it can be mocked for tests)	2016-03-24 19:28:21 -07:00
Gregory Becker	315623d361	Fixed things from merge.	2016-03-24 16:55:46 -07:00
Adam J. Stewart	9985816642	Fix spack info indentation	2016-03-24 14:49:41 -05:00
Peter Scheibel	fe71ba992d	remove unused import	2016-03-24 12:16:50 -07:00
Peter Scheibel	13bf7d4ff1	(1) move definition of MockCache to test command (no definitions or extra work is required in MockPackagesTest) (2) removing outdated logic (which originated in this branch) and minor cleanup	2016-03-24 12:02:39 -07:00
alalazo	758a9c9096	python extensions : create PYTHONPATH in module files	2016-03-24 10:57:46 +01:00
alalazo	f095e619b9	module files configuration : enable/disable logic is now positive	2016-03-24 09:31:28 +01:00
Peter Scheibel	dbfa6c925e	replace references to cache directory with references to new cache object. tests may assign a mock cache but by default it is None (this will avoid any implicit caching behavior confusing unit tests)	2016-03-23 20:18:58 -07:00
Peter Scheibel	ed0f6f75a7	clear test cache before and after each MockPackagesTest (I think Ive got a better way to avoid test fragility but Ill add this for now)	2016-03-23 19:49:28 -07:00
Gregory Becker	688eca23ff	cleanup	2016-03-23 09:54:57 -07:00
alalazo	d93f2b335d	modules : fixed annoying indent	2016-03-23 16:04:36 +01:00
alalazo	0fbdb3f65d	modules : added configuration file with disable keyword	2016-03-23 15:54:26 +01:00
Todd Gamblin	38350ae33d	resurrect preferred=True option for packages lost in merge of externals support. - Pyton 2.7.11 is preferred again.	2016-03-23 01:32:54 -07:00
Todd Gamblin	c4134ee71e	Fix #608 : broken numpy build. - Failed to catch all instances of modify_module when it was renamed to setup_dependent_package. - Refactored remaining modify_module calls. - Also modified Python's setup_dependent_package slightly: only creates empty site-packages directory for Python extensions now, not for all dependents.	2016-03-23 00:36:32 -07:00
Peter Scheibel	cb9fba98d8	(1) relocate cache for tests (2) initial approach for restoring unit tests (just for git tests although the same concept applies to the other unit tests which are failing - namely those for svn and hg)	2016-03-22 19:37:47 -07:00
Gregory Becker	7c729d4c3c	Merged newarch into merge	2016-03-22 15:22:51 -07:00
Peter Scheibel	75460d8586	URLFetchStrategy.archive does a copy vs. a move now	2016-03-22 10:43:43 -07:00
Todd Gamblin	a26992ef55	Change from PR #552 : rename setup_dependent_python_module -> setup_dependent_package - Fixed in package.py - Fixed wrong prototypes in packages that use it. - Fixed build_environment to set module variables properly - added hacky fix to ensure spec/package consistency in build processes. - Need to think about defensive spec copy done by `Repo.get`. May be time to think about an immutable spec implementation.	2016-03-22 01:56:16 -07:00
Peter Scheibel	41a97c8f80	temporarily wrap archiving with conditional to avoid moving (this still causes a failure on the initial download)	2016-03-21 20:55:23 -07:00
Peter Scheibel	b255f02762	undoing whitespace-only diff	2016-03-21 20:50:26 -07:00
Peter Scheibel	ee5e507ff6	pursuing a strategy using fetch.archive and treating var/spack/cache as a mirror. this should support both URLFetchStrategy as well as VCSFetchStrategy (the previous strategy supported only the former). this won't work until URLFetchStrategy.archive is updated	2016-03-21 20:48:12 -07:00
Todd Gamblin	b1516f64eb	Rename some environment methods to be less repetitive, add set_path.	2016-03-21 16:01:40 -07:00
Todd Gamblin	439d47b4e4	Refactor environment setup. - Gave setup_environment and setup_dependent_environment more similar signatures. They now allows editing the Spack env and the runtime env for this package and dependents, respectively. - modify_module renamed to setup_dependent_python_module for symmetry with setup_dependent_environment and to avoid confusion with environment modules. - removed need for patching Package objects at runtime. - adjust packages to reflect these changes.	2016-03-21 16:01:35 -07:00
Todd Gamblin	e88df95b42	Remove unused code from modules.py	2016-03-21 16:01:26 -07:00
Todd Gamblin	48b35bb495	Fix print function in uninstall.py	2016-03-21 16:00:50 -07:00
Todd Gamblin	861a235ecb	Merge pull request #552 from epfl-scitas/features/env_objects_flying_around enhancement proposal : customization of module files	2016-03-21 15:56:20 -07:00
Matthew LeGendre	5d06daeb5e	Add test for issue 573, child with compiler not respected in concretization	2016-03-21 14:28:34 -07:00
Matthew LeGendre	b79fce76cb	Fix issue 573 where Spack was ignoring user's compiler preference in concretization	2016-03-21 14:28:07 -07:00
alalazo	fbeffee91e	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around Conflicts: lib/spack/spack/package.py var/spack/repos/builtin/packages/netlib-scalapack/package.py	2016-03-21 09:46:49 +01:00
alalazo	aef6d50b08	uninstall : fixed typo (print statement vs. print function)	2016-03-21 09:23:25 +01:00
Peter Scheibel	d632266a40	move cache to var/spack/cache	2016-03-18 17:15:45 -07:00
Peter Scheibel	fd067dd8b8	since only archives with checksums can be retrieved from the cache, make sure that an archive without a checksum isnt placed there (this wouldn't cause an error but does waste space and might be confusing)	2016-03-18 17:00:13 -07:00
Peter Scheibel	ac7323118e	rename for clarity	2016-03-18 16:34:45 -07:00
Peter Scheibel	16fa40b893	(1) add a var/cache directory under spack. (2) downloads from URLFetchStrategy check the cache and skip the download if the source is available there.	2016-03-18 15:50:24 -07:00
Todd Gamblin	e9126baaab	Add docs for InstallError.	2016-03-18 13:42:45 -07:00
Todd Gamblin	23f3f1adfe	Make InstallError and ExternalPackageError visiible in packages.	2016-03-18 13:32:37 -07:00
Todd Gamblin	741bea032c	Merge pull request #574 from LLNL/features/flattener Created flatten_dependencies function	2016-03-18 12:13:48 -07:00
Gregory Becker	151b04637e	changed function name and removed hardcoded libs dir	2016-03-18 11:55:31 -07:00
Gregory Becker	af7e3cadde	cleanup	2016-03-18 11:34:07 -07:00
Gregory Becker	76672a4e34	Refactoring flat_install	2016-03-18 11:28:44 -07:00
Todd Gamblin	4e9ba49272	Merge pull request #576 from adamjstewart/features/tar Add support for .tar files	2016-03-18 11:13:17 -07:00
Adam J. Stewart	6acb830263	Add support for .tar files	2016-03-18 13:03:55 -05:00
Gregory Becker	80495e50f9	added error class for error that should never come up	2016-03-18 09:46:18 -07:00
Gregory Becker	1fa38689d8	Created flatten_dependencies function that dummy packages can use to create sane install environments.	2016-03-18 09:35:56 -07:00
alalazo	491babd5cd	env modifications : added a validation rule	2016-03-18 17:09:20 +01:00
alalazo	1e468c5541	modules : added formats mapping	2016-03-18 16:02:44 +01:00
alalazo	ccd90df62f	modules : turned category into a property (logic can be extended later)	2016-03-18 15:41:14 +01:00
alalazo	67ca2c704b	modules : fixed bug in `modify_module` arguments	2016-03-18 15:18:26 +01:00
alalazo	ec8cc2b528	PYTHONPATH : python patches methods for its extensions	2016-03-18 14:40:53 +01:00
Ben Morgan	076cc764a7	Add additional suffixes for GCC compiler	2016-03-18 11:26:22 +00:00
alalazo	f9438c75d0	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around	2016-03-18 10:26:34 +01:00
Erik Schnetter	f3ea0420f8	Import recent changes	2016-03-17 21:53:13 -04:00
Erik Schnetter	84b7cd593f	Merge branch 'develop' into correct-cc # Conflicts: # lib/spack/env/cc	2016-03-17 21:52:24 -04:00
Todd Gamblin	90268876f7	Change sanity_check_[file\|dir] to sanity_check_is_[file\|dir], per #554 - Add documentation as well.	2016-03-17 18:49:58 -07:00
alalazo	ac394718ec	python : implemented possible solution	2016-03-17 18:22:07 +01:00
alalazo	e673127263	package : added documentation	2016-03-17 18:11:23 +01:00
alalazo	38c3c84969	environment : added caller information	2016-03-17 17:37:33 +01:00
alalazo	3da4d6664b	environment : simplified hierarchy according to comments in review	2016-03-17 15:38:08 +01:00
alalazo	f0f0663d1b	package : split `environment_modifications` into `setup_environment` and `setup_dependent_environment`. package : renamed `module_modifications` to `modify_module` for consistency	2016-03-17 15:11:39 +01:00
alalazo	9cdd79e33f	modules : restored previous logic for path inspection	2016-03-17 14:14:18 +01:00
Adam J. Stewart	bb04d5cc63	Fix grammar in mirrors documentation	2016-03-16 14:27:22 -05:00
alalazo	ac762e95a6	modules : removed dead code	2016-03-16 16:23:02 +01:00
alalazo	597727f8be	tclmodules : added hooks to process EnvironmentModifications objects	2016-03-16 15:19:13 +01:00
alalazo	b45ec3f04e	environment : simplified modification of the environment	2016-03-16 10:55:28 +01:00
alalazo	b2c98feea4	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around	2016-03-16 09:02:35 +01:00
Todd Gamblin	7eca383b10	Add sanity check paths to packages; fix #505	2016-03-15 17:16:04 -07:00
Matthew LeGendre	108ea1522a	Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize Bugfix/gh538 less greedy concretize	2016-03-15 16:18:54 -07:00
Todd Gamblin	15bbd088e6	Fix #551 : version bug in `spack create` - `spack create` now sets a proper version in generated file, based on the filename, even if it can't find any tarballs for the package.	2016-03-15 14:38:06 -07:00
alalazo	c8cc6f4fc1	test : fix for python 2.6	2016-03-15 16:59:29 +01:00
alalazo	ccced9f290	package : optimized imports	2016-03-15 15:12:39 +01:00
alalazo	cc3d9f4eb7	environment : added test, modified docs	2016-03-15 15:09:35 +01:00
alalazo	572cb93bf8	package : renamed `setup_dependent_environment` to `module_modifications`	2016-03-15 14:05:30 +01:00
alalazo	c85888eb57	package : added `environment_modifications`	2016-03-15 13:36:41 +01:00
alalazo	bcea1df01c	environment : refactoreded set_build_environment_variables	2016-03-15 10:49:33 +01:00
alalazo	f20247ae55	environment : refactoreded set_compiler_environment_variables	2016-03-15 10:08:54 +01:00
alalazo	f9923452b3	environment : added machinery to collect modifications to the environment and apply them later	2016-03-14 14:35:48 +01:00
Todd Gamblin	f2761270f3	Make concretization less greedy: add backtracking for virtuals. - `_expand_virtual_packages` now gets a candidate list and will try all the candidates. - Good news: If the first virtual in the list conflicts with something else in the spec, we'll keep trying until we find a good one. - Bad news: Only looks as far as the next normalize(); can't see conflicts further ahead than that if they're inevitable some other virtual expansion. - Refactor `concretize.py` to keep all the nasty spec graph stitching in `spec.py`. This is more similar to before externals support. - `concretize.py` now just returns a list of candidates sorted by ABI compatibility to `_expand_virtual_packages`, and `spec.py` handles testing the candidates. - Refactor the way external paths are handled in `config.py` and `concretize.py`: - previously, `spec_externals` returned spec/path pairs. Now it returns specs with `external` set. Makes code in `concretize.py` more natural.	2016-03-14 05:04:01 -07:00
Todd Gamblin	f45b8b1083	Add some tests for packages with multiple virtual dependencies. - Added mock `hypre` package, depends on `lapack` and `blas`. - test cases where some packages provide both `lapack` and `blas`, but others do not.	2016-03-14 05:02:50 -07:00
Todd Gamblin	05c761dee9	Add `package_class` method to spec. - Shouldn't call .package from within things like normalize() and concretize() beacuse spec may be inconsistent. - Add `.package_class` property so that we can get at package metadata without constructing a Package with a Spec. - should be faster than `.package` was, anyway. Use where possible.	2016-03-14 04:59:29 -07:00
Todd Gamblin	003fd4d834	Optimize __eq__ and __ne__ in key_ordering - use `is` when possible before calling `_cmp_key()`	2016-03-14 04:55:30 -07:00
Elizabeth F	5c865b9b70	Fixed typo in typo fix.	2016-03-13 19:44:04 -04:00
Elizabeth F	6f26c45143	Fixed typo bug. Made error comment more explicit	2016-03-13 19:41:09 -04:00
Elizabeth F	3383486adc	Fixed typo bug. Made error comment more explicit	2016-03-13 19:39:45 -04:00
Elizabeth F	0426796d9f	Fixed typo	2016-03-13 18:14:38 -04:00
Elizabeth F	030e8dd1ac	Removed Python 2.7-style string formatting	2016-03-13 18:04:23 -04:00
Elizabeth F	4c9a52044a	Fixed CMakePackage import	2016-03-13 15:18:24 -04:00
citibeth	857f791286	Add missing import.	2016-03-13 00:40:50 -05:00
citibeth	9885f1a19e	Fix for Python 2.6	2016-03-13 00:34:46 -05:00
Elizabeth F	c1a8574d8f	Fixed for Python 2.6	2016-03-13 00:29:40 -05:00
citibeth	4236157823	(1) Added "spack spconfig" command. (2) Neatened up the spconfig.py auto-generated file.	2016-03-13 00:13:00 -05:00
Elizabeth F	90bb855ffa	A new subclass StagedPackage(Package) is introduced. This PR should not change the behavior for existing packages that subclass from spack.Package. If a package subclasses spack.StagedPackage instead of spack.Package, the install() phase (run inside a forked process) is now separated into sub-stages: a) spconfig: Generate a script spconfig.py that will configure the package (eg by running CMake or ./configure) This is for use if the user wishes to build externally from Spack. Therefore, the Spack compiler wrappers are NOT used here. Currently, that means that RPATH support is up to the user. b) configure: Configure the project (eg: runs configure, CMake, etc). This will configure it for use within Spack, using the Spack wrapper. c) build: eg: "make" d) install: eg: "install" If one chooses to use StagedPackage instead of Package, then one must implement each of the install sub-stages as a separate method. StagedPackage.install() then calls each of the sub-stages as appropriate. StagedPackage can be configured to only run certain sub-stages. This is done by setting the optional kwarg install_phases when calling do_install(). Setting install_phases() ONLY has an effect on StagedPackage, not on any existing packages. By default, install_phases is set to make StagedPackage run the same stages that are normally run for any package: configure, build, install (and NOT spconfig). The ability for Spack to run stages selectively for StagedPackage instances will enable new functionality. For example, explicit CMake/Autotools helpers that allow Spack to help configure a user's project without fetching, building or installing it. ------------- One implementation of StagedPackage is provided, CMakePackage. This has the following advantage for CMake-based projects over using the standard Package class: a) By separating out the phases, it enables future new functionality for packages that use it. b) It provides an implementation of intall_spconfig(), which will help users configure their CMake-based projects. CMakePackage expects users to implement configure_args() and configure_env(). These methods provide the package-specific arguments and environment needed to properly configure the package. They are placed in separated functions because they are used in both the spconfig and configure stages. TODO: 1. Generate spconfig.py scripts that are more readable. This allows the users to understand how their project is configured. 2. Provide a practical way for the user to ACCESS the spconfig stage without building the project through Spack. 3. The CMAKE_TRANSITIVE_INCLUDE_PATH stuff needs to be reworked; it should be considered provisional for now. 4. User of Autotools might wish to make a similar ConfigurePackage subclass of StagedPackage. --------------- One package using CMakePackage is introduced. See ibmisc/package.py.	2016-03-11 23:30:38 -05:00
becker33	3060f27909	Merge pull request #536 from adamjstewart/fixes/doc_typos Documentation typo fixes	2016-03-11 10:53:57 -08:00
Adam J. Stewart	bae03404f4	Documentation typo fixes	2016-03-11 12:51:45 -06:00
Matthew LeGendre	1c7f754e5b	Invert and rename the `nobuild` option in package.yaml configs to `buildable`.	2016-03-11 10:04:08 -08:00
alalazo	1d70b590fc	build_environment : fixed minor spelling errors and a few style issues	2016-03-11 13:20:57 +01:00
Todd Gamblin	f40c78a064	Merge pull request #532 from mplegendre/bugfix/ordering_satisfies Fix issue with preferred satisfies not being respected	2016-03-10 21:50:40 -08:00
Matthew LeGendre	ac88cab68f	Fix issue with preferred satisfies not being respected	2016-03-10 17:00:27 -08:00
Todd Gamblin	30df1c838d	Merge pull request #531 from mplegendre/bugfix/github-530 Fix type error that was causing mis-ordering of compiler versions	2016-03-10 16:31:52 -08:00
Matthew LeGendre	4693af0736	Fix type error that was causing mis-ordering of compiler versions	2016-03-10 16:23:35 -08:00
Todd Gamblin	2bbf42b49d	Indentation change.	2016-03-10 16:18:11 -08:00
Todd Gamblin	670024cf77	Merge branch 'mplegendre-features/external-packages' into develop	2016-03-10 10:07:08 -08:00
alalazo	30adc4c9b8	cc : handle spaces in folders?	2016-03-10 14:59:31 +01:00
alalazo	78ef0618bc	cc : converted indents to spaces	2016-03-10 14:35:09 +01:00
Massimiliano Culpo	7ae6c62ddb	Fixed shell quoting error	2016-03-10 14:08:43 +01:00
Massimiliano Culpo	835b47c196	Merge branch 'develop' of https://github.com/LLNL/spack into fixes/intel_openmpi	2016-03-10 13:18:03 +01:00
Todd Gamblin	c4fddcc6e9	Add 'provders' back into packages.yaml schema	2016-03-10 03:15:49 -08:00
Todd Gamblin	b637f75164	Merge branch 'mplegendre-features/external-packages' into develop	2016-03-10 02:04:44 -08:00
Todd Gamblin	82b7067fdf	Refactored external packages slightly. - Move `Spec.__cmp__` out of spec, into concretize as `cmp_specs`. - `Spec.__cmp__` was never called (except explicitly) due to rich comparison operators from `key_ordering` - Refactor `_find_other_spec` to free function `find_spec`. Add a test for it to make sure it works.	2016-03-10 01:29:55 -08:00
Todd Gamblin	1fe196f95c	whitespace and formatting	2016-03-10 01:29:55 -08:00
Todd Gamblin	048c406f49	Remove vestigial variants in directory name.	2016-03-10 01:29:54 -08:00
Todd Gamblin	b0572a5462	Minor tweaks to abi code.	2016-03-10 01:29:54 -08:00
Todd Gamblin	0244d794cd	remove unnecessary import	2016-03-10 01:29:54 -08:00
Todd Gamblin	b0377da771	update mirror config documentation. - mirrors.yaml uses Spack's OrderedDict rather than lists.	2016-03-10 01:29:53 -08:00
Todd Gamblin	52cdcdde76	Fix #525 : sbang handles symlinks & directories properly.	2016-03-09 17:15:10 -08:00
Todd Gamblin	f56939c16c	Add unit test for sbang patching.	2016-03-09 17:13:41 -08:00
Matthew LeGendre	dd0ae255ad	Merge branch 'features/external-packages' of github.com:mplegendre/spack into features/external-packages Conflicts: lib/spack/docs/site_configuration.rst	2016-03-09 16:18:37 -08:00
Matthew LeGendre	1f06dd40f7	Update documentation for new packages.yaml config format.	2016-03-09 16:11:53 -08:00
Matthew LeGendre	a384ad5b12	Fix problem with pure integer arguments in preferred versions list (e.g, 2 instead of 2.7.3)	2016-03-09 16:11:33 -08:00
Todd Gamblin	ca10229565	Fixes #524 - Had attempted to add more functionality by assigning different meanign None, True, and False values "keep_stage" (where False was "always delete"). - Turns out that's not really worth the complexity. Having the third "always delete" sense is hardly ever useful but makes the code hard to understand.	2016-03-09 14:56:21 -08:00
Matthew LeGendre	87db69478d	Merge branch 'develop' into features/external-packages Conflicts: lib/spack/spack/package.py	2016-03-09 11:09:37 -08:00
Luigi Calori	bf4d51ea0b	fix error exit when doing spack patch without parameters, same as spack stage	2016-03-09 09:27:53 -08:00
Todd Gamblin	9c61843737	Fix bugs in DIYStage: fetch & context handling. - DIYStage needs to be a context handler - DIYStage.fetch needs to take 2 args.	2016-03-08 13:58:41 -08:00
Todd Gamblin	df84677d16	Make diy generate verbose build output by default. - added -q option to shut it up	2016-03-08 13:57:13 -08:00
Todd Gamblin	a1be45d0e7	Fix bug with setting module-scope vars in derived package classes.	2016-03-08 13:56:44 -08:00
Todd Gamblin	a4861a3072	Minor changes/bugfixes on md5/checksum PR	2016-03-08 10:39:46 -08:00
Todd Gamblin	747855b960	Merge branch 'fixes/md5' of git://github.com/epfl-scitas/spack into epfl-scitas-fixes/md5	2016-03-08 09:12:57 -08:00
Todd Gamblin	31cebb969a	Merge pull request #504 from LLNL/bugfix/github-502 Bugfix/GitHub 502: Error: No spec file found at path	2016-03-08 03:43:52 -08:00
Todd Gamblin	214deeda54	Merge branch 'features/noexpand' into develop Conflicts: lib/spack/llnl/util/filesystem.py	2016-03-08 03:29:57 -08:00
Todd Gamblin	5aadb6df19	Fixes #502 . Create install prefix before build, clean up do_install. - Fix bug introduced during merge of stage refactor. - install prefix was not created before build_environment.fork() - build_environment.fork() calls setup_dependent_environment - python's setup_dependent_environment can inadvertently create the install prefix before directory_layout expects it. - Clean up Package.do_install: - simplify control flow: parent process now entirely responsible for creating/destroying the install prefix. cleanup is now in one place. - Hoisting cleanup out of the child improves nesting of try/catch in `real_work`. - `real_work` renamed to `build_process`	2016-03-08 02:50:26 -08:00
alalazo	77ec27c730	fixed bug : similar issues in checksum and md5 as were solved in `ad103dcafa`	2016-03-08 11:09:41 +01:00
Todd Gamblin	96e1b2d25c	Merge pull request #486 from RemoteConnectionManager/paraview_fix Paraview new version	2016-03-07 02:48:12 -08:00
Todd Gamblin	4d1703fc06	Merge branch 'features/repos-doc-fix' into develop	2016-03-07 02:40:59 -08:00
Todd Gamblin	12ddf241a5	Fix code block in docs.	2016-03-07 02:39:14 -08:00
Todd Gamblin	547933e7e4	Fix bug in -Xlinker argument handling - also update test to match.	2016-03-07 01:48:26 -08:00
Todd Gamblin	f2bcc6cc35	Merge branch 'eschnett/rpath-comma' of git://github.com/eschnett/spack into eschnett-eschnett/rpath-comma	2016-03-06 23:50:14 -08:00
Erik Schnetter	265ef337a8	Don't quote -rpath literal	2016-03-06 23:27:30 -05:00
Todd Gamblin	108277fb5d	Fix docs that have gone stale since repos were added.	2016-03-06 19:32:00 -08:00
Todd Gamblin	ada675dea2	Merge branch 'features/sbang' into develop Conflicts: lib/spack/llnl/util/filesystem.py	2016-03-06 19:30:19 -08:00
Todd Gamblin	1ee90a6fe7	Make spack_cc, spack_cxx, spack_f77, spack_fc available in build env. - Add for convenience for packages that need to refer to these. - Added an example in the documentation.	2016-03-06 16:57:30 -08:00
Todd Gamblin	240ada5775	Add `expand=False` option for URL downloads. - Allows skipping the expand step for downloads. - Fixed stage so that it knows expansion didn't fail when there is a no-expand URLFetchStrategy. - Updated docs to reflect new option, and provided an example.	2016-03-06 16:51:09 -08:00
Todd Gamblin	e515042a36	Fix stage creation bug, simplify do_install code.	2016-03-06 01:41:48 -08:00
Todd Gamblin	ad103dcafa	Small refactor: add keep parameter to stage, get rid of stage.destroy call. - package.py uses context manager more effectively. - Stage.__init__ has easier to understand method signature now. - keep can be used to override the default behavior either to keep the stage ALL the time or to delete the stage ALL the time.	2016-03-05 20:00:30 -08:00
Todd Gamblin	14d48eba46	Revert `c5d9ee8924` for bug fixes. - This reverts commit `c5d9ee8924`. - merged too soon before - reverting and fixing bugs now. Conflicts: lib/spack/spack/mirror.py lib/spack/spack/package.py	2016-03-05 18:40:28 -08:00
Todd Gamblin	097df180e2	Merge pull request #493 from adamjstewart/features/pgi Modifications to get PGI working	2016-03-05 14:19:15 -08:00
Todd Gamblin	bfce2c7508	Fix bug in hook: ensure bin directory exists before listing.	2016-03-05 04:42:52 -08:00
Todd Gamblin	fc6aa7374a	Fix #104 , #54 : issues with overlong shebang in deep directories. This does several things: - Add `sbang`: a script to run scripts with long shebang lines. - Documentation for `sbang` is in `bin/sbang`. - Add an `sbang` hook that filters the `bin` directory after install and modifies any scripts wtih shebangs that are too long to use `sbang` instead. - `sbang` is at the top level, so it should be runnable (not much we can do if spack itself is too deep for shebang) - `sbang`, when used as the interpreter, runs the second shebang line it finds in a script. - shoud fix issues with too long shebang paths.	2016-03-05 04:18:48 -08:00
becker33	6449e8b1b9	Merge pull request #492 from adamjstewart/typos/compiler Typo fix in compiler docstring	2016-03-04 14:25:56 -08:00
Adam J. Stewart	5db9673904	Typo fix in compiler docstring	2016-03-04 10:51:41 -06:00
citibeth	202fbc6812	Rmoved periods. Should help use of cut'n'paste from console windows.	2016-03-03 23:40:29 -05:00
Adam J. Stewart	311d71ec86	Modifications to get PGI working	2016-03-03 16:50:51 -06:00
Todd Gamblin	c5d9ee8924	Revert "refactoring proposal : turn Stage into a context manager"	2016-03-03 14:41:20 -08:00
Luigi Calori	a531a4f5e3	help spack versions paraview to get versions without v	2016-03-03 18:00:50 +01:00
alalazo	db92699c02	test : fixed tests that were broken by import optimization	2016-03-03 11:05:36 +01:00
alalazo	7f4a69319a	Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/stage Conflicts: lib/spack/spack/package.py	2016-03-03 10:19:45 +01:00
alalazo	5ef3621556	stage : minor syntax fix	2016-03-03 10:10:30 +01:00
Todd Gamblin	6701977f1a	Merge pull request #475 from LLNL/features/env-and-package-provenance Features/env and package provenance	2016-03-03 00:42:40 -08:00
alalazo	353d12d2e6	stage : added create function as decided in #477 comments	2016-03-03 09:18:47 +01:00
alalazo	717bcb8624	test : optimized import statements	2016-03-03 09:17:49 +01:00
Gregory Becker	4f9a309de8	made spack more conservative in compiler strategies attempted	2016-03-02 16:35:02 -08:00
Gregory Becker	487b2495a1	made spack more conservative in compiler strategies attempted	2016-03-02 16:33:10 -08:00
Mario Melara	2b48728741	Changed os subclasses CNL to change attribute to MODULES	2016-03-02 16:15:34 -08:00
Mario Melara	58efe1550d	Default PATH arg	2016-03-02 16:14:42 -08:00
Gregory Becker	16d8c25b23	fixed floating 'target'	2016-03-02 16:12:32 -08:00
Gregory Becker	65d4169f00	fixed type/bug	2016-03-02 16:03:11 -08:00
Gregory Becker	ffb9574312	fixed type/bug	2016-03-02 15:59:23 -08:00
Gregory Becker	6e7b00a0f6	Made module handling much saner and safer	2016-03-02 15:54:23 -08:00
Mario Melara	b4298979fe	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-03-02 14:18:19 -08:00
Gregory Becker	676591ffc0	fixed a bug and a test bug	2016-03-02 14:17:46 -08:00
Mario Melara	975cba295b	Added 'better' tests	2016-03-02 14:16:57 -08:00
Mario Melara	e46bac19fa	Changed architecture to dict	2016-03-02 12:09:02 -08:00
Mario Melara	90e90f61c1	Got rid of the compiler strategy from target	2016-03-02 12:08:43 -08:00
Mario Melara	47c8e1366f	Changed to_dictionary and from_dictionary methods	2016-03-02 12:08:17 -08:00
Gregory Becker	25f20b1967	bug hunting	2016-03-02 11:40:21 -08:00
Glenn Johnson	6bbadbfaac	Add CPATH pointing to include directories.	2016-03-02 13:18:43 -06:00
Mario Melara	340ecf6e9a	Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch	2016-03-02 11:07:52 -08:00
Gregory Becker	86e90bba87	another partial, narrowing in on proper arch	2016-03-02 11:05:05 -08:00
Mario Melara	81e236b2de	Changed Arch to class instead of namedtuple. Now platform is automatically set upon creation of class	2016-03-02 11:04:55 -08:00
Gregory Becker	45887dec8e	partial work on bug hunting	2016-03-02 10:56:46 -08:00
Mario Melara	f27f2f8e49	Fixed some indentation errors	2016-03-02 10:27:12 -08:00
Mario Melara	4d74784209	Changed add_architecture_from_string and split the work done into two methods add_target_from_string and add_operating_system_from_string	2016-03-02 10:27:00 -08:00
Mario Melara	527bb7abfe	Changed _cmp_key	2016-03-02 10:26:09 -08:00
Todd Gamblin	9f6ebd7c6e	Merge pull request #465 from citibeth/efischer/160229-RemoteRootBugfix Bug Fix: When Spack create roots around for other versions, it someti…	2016-03-02 10:24:17 -08:00
Gregory Becker	615ea969f8	made arch instantiate as a tuple	2016-03-02 10:14:50 -08:00
Gregory Becker	4601c36f57	cleaned up concretize architecture	2016-03-02 09:55:44 -08:00
alalazo	21cd05aad5	package : updated doc	2016-03-02 17:28:21 +01:00
alalazo	ca41909ec5	package : removed do_clean()	2016-03-02 17:19:27 +01:00
alalazo	4d63544fe9	remove_link_tree : moved to llnl.util.filesystem	2016-03-02 16:55:57 +01:00
alalazo	901e4851b9	_cleanup_dead_links : factored method into a function and put it in llnl.filesystem	2016-03-02 16:19:32 +01:00
alalazo	9001b9ed3c	package : minor syntax fixes mirror : extracted add_single_spec from create	2016-03-02 15:56:09 +01:00
alalazo	d649b715ed	stage : updated functions doc _cleanup_dead_links : fixed minor bug	2016-03-02 13:16:04 +01:00
alalazo	65b2a24f7c	stage : removed _setup method	2016-03-02 13:03:40 +01:00
alalazo	726b350689	test : fixed failing unit tests	2016-03-02 12:52:38 +01:00
Todd Gamblin	a0c6519de9	Fixes #476 : create was broken for FTP URLs.	2016-03-02 01:47:54 -08:00
Todd Gamblin	52081c46d6	Fixes #469 : Store package.py files in the .spack directory. - Adds packages in spack repos inside the .spack directory, so that packages can be rebuilt automatically later.	2016-03-02 00:09:24 -08:00
Todd Gamblin	21d125c914	Fixes #175 : Dump environment provenance as well as build log.	2016-03-02 00:08:36 -08:00
Todd Gamblin	be306d09e9	Move repo creation code into repository.py	2016-03-02 00:04:46 -08:00
Todd Gamblin	c488f7c4d8	Fix bug in install permission setting.	2016-03-01 23:57:34 -08:00
Adam J. Stewart	a9f0b98d4d	Typo fix	2016-03-01 15:53:53 -06:00
Elizabeth F	a339ac0a72	Bug Fix: When Spack create roots around for other versions, it sometimes finds files it thinks are tarballs, but are not. Previously, it would crash if any such files are found. This change allows it to simply skip them and move on, processing the rest of the files it finds correctly.	2016-02-29 23:04:11 -05:00
Ian Lee	67f327f805	Updated links to use new llnl.gov address	2016-02-28 19:47:19 -08:00
Mario Melara	b591d2b501	Changed operating_system path	2016-02-25 18:49:52 -08:00
Mario Melara	ccd4a79b39	changed architecture.target to architecture.platform_os, so that compiler_for_spec uses operating system strategy	2016-02-25 18:49:27 -08:00
Mario Melara	eb96f38298	Got rid of debug comment	2016-02-25 18:48:25 -08:00
Mario Melara	f0149faf88	Added doc strings to functions in architecture.py	2016-02-25 18:48:00 -08:00
Mario Melara	ac55ce989d	Changed compiler finding strategy to come from operating system instead of target	2016-02-25 18:47:41 -08:00
becker33	7176e5ef07	Merge pull request #299 from epfl-scitas/enhancement/os_detection enhancement proposal : boolean support for when=<arg>	2016-02-25 13:38:03 -08:00
Mario Melara	5989e3f65d	Changed from_dict to arch_from_dict method	2016-02-25 11:53:02 -08:00
Mario Melara	5e4d3e7b82	Changed naming convention of operating_system, makes it easier to create instance from dictionary just using name without the version attached. Object will stil display as name+version	2016-02-25 11:48:43 -08:00
Mario Melara	550df4cdd6	Some cleaning up. Finally got arch_from_dict working successfully.	2016-02-25 11:47:27 -08:00
Mario Melara	9ac2556285	Deleted old operating_system (without the s) file	2016-02-25 10:41:28 -08:00
Mario Melara	b43a5498a1	Changed import path to operating_systems	2016-02-25 10:36:47 -08:00
Mario Melara	f161609929	Renamed operating_system to operating_systems	2016-02-25 10:36:12 -08:00
Mario Melara	34be473b7c	Deleted files	2016-02-25 10:35:58 -08:00
Mario Melara	863a5bc4fa	Fix for 'Parent module spack.operating_systems not found while handling absolute import'	2016-02-25 10:34:55 -08:00
Mario Melara	8d1c06d141	Changed to dict method. Didn't realize this was being assigned to a dictionary already so got rid of d['architecture']	2016-02-24 15:38:33 -08:00
Mario Melara	bd7c189c12	Added more comments	2016-02-24 15:37:50 -08:00
Mario Melara	5c3c6e7f06	Got rid of print statements	2016-02-24 15:34:32 -08:00
Mario Melara	234681306c	Changed to appropriate class names for operating system	2016-02-24 15:32:23 -08:00
Mario Melara	2de81cfc62	Changed name to appropriate camelcase	2016-02-24 15:31:21 -08:00
Mario Melara	9e844d974c	Added comments. Need to figure out how to make arch_tuple from_dict	2016-02-24 15:30:20 -08:00
Mario Melara	7779974143	arch_from_dict worked on	2016-02-24 15:02:40 -08:00
Mario Melara	339f4bfd23	Added unit testing for to_dict method	2016-02-24 12:16:09 -08:00
Mario Melara	5d5d3c5858	Added to dictionary method	2016-02-24 12:15:52 -08:00
alalazo	6f42dd556d	stage : on-going refactoring	2016-02-24 17:37:58 +01:00
alalazo	5ce97eeda5	intel : polished code	2016-02-24 09:17:04 +01:00
Massimiliano Culpo	4316f1cd31	Modified wrapper to have a different behavior when modeis vcheck	2016-02-23 16:57:19 +01:00
Mario Melara	cfa7c4feb8	Added CNL10 as back_os and default_os	2016-02-22 16:18:25 -08:00
Mario Melara	083b7b46d9	Added more tests	2016-02-22 16:17:54 -08:00
Mario Melara	3c87d137a3	Added compiler strategy entry and also added new operating system subclass called CNL for compute node linux (name will probably change because I can't find docs on the EXACT name)	2016-02-22 16:17:33 -08:00
Mario Melara	ebc5e26c2d	Added compiler strategy field to Operating System class	2016-02-22 16:16:20 -08:00
Mario Melara	a385dae1ae	Unit tests to test operating system subclass creation and whether compiler strategy is set correctly	2016-02-22 14:54:30 -08:00
Mario Melara	1367ccab93	New folder that will hold operating system subclasses	2016-02-22 14:53:55 -08:00
Mario Melara	22bf4bc080	import linux distro subclass. Added method to add operating system to platform dictionary	2016-02-22 14:53:16 -08:00
Mario Melara	1a7d6ed49a	import MacOSX subclass and added add_operating_system method to use subclass	2016-02-22 14:52:52 -08:00
Mario Melara	725d6d5fce	import linux distro operating system subclass, set front-end os to LinuxDistro()	2016-02-22 14:52:09 -08:00
Mario Melara	a8de45ce28	Got rid of methods used to detect mac osx and linux osx. Now those methods are used my operating system subclasses	2016-02-22 14:50:51 -08:00
Mario Melara	18ddbae60e	Added new module path to operating system file	2016-02-22 14:49:53 -08:00
Todd Gamblin	3c1aa9a4ad	Merge pull request #298 from epfl-scitas/refactoring/resource_directive refactoring proposal : composite for Stage and FetchStrategy	2016-02-18 23:13:12 -08:00
Mario Melara	28218755a5	Changed spec.target to spec.architecture	2016-02-18 13:06:55 -08:00
Todd Gamblin	d8a70166d3	Fixes #434 Compiler detection was not getting triggered properly with some of the new config logic. Adjust the conditions under which Spack will serach for compilers.	2016-02-18 00:56:29 -08:00
Todd Gamblin	c112cf66fe	Merge pull request #443 from trws/dicts-like-string-keys remove the unprotected key name from create.py	2016-02-17 17:06:51 -08:00
Tom Scogland	00125e4688	remove the unprotected key name from create.py Small fix to use dicts correctly.	2016-02-17 16:43:36 -08:00
Mario Melara	93a92a00ee	Changed abstract.target to abstract.architecture.target and abstract.architecture.target.concrete	2016-02-17 14:53:09 -08:00
Mario Melara	d9e8bf1807	Added ARCHITECTURE field when showing specs	2016-02-17 14:51:14 -08:00
Mario Melara	54042e399b	Changed target to architecture.target	2016-02-17 14:50:10 -08:00
Mario Melara	1d484dbe5f	Changed so that modules use correct file path with spec.architecture instead of spec.target	2016-02-17 14:49:36 -08:00
Mario Melara	ab4006ee2c	Changed so that directory layout uses the platform-os-target string version of the arch tuple	2016-02-17 14:48:53 -08:00
Mario Melara	524e9b372e	From now on all targets are now architecture. Architecture is a named tuple so any time we need access to target we do architecture.target.	2016-02-17 14:47:29 -08:00
Mario Melara	2c20fc2ebf	Changed module loading to use arch tuple instead of regular target.module	2016-02-17 14:45:53 -08:00
Mario Melara	2a79537ba1	Fixed silly typo that gave errors in tests	2016-02-17 14:44:38 -08:00
Mario Melara	a3039c4c67	Changed add_architecture_from_string, it now loops through the string and checks whether each piece of string is a valid platform, operating system and target. If the operating system or target are none it will use the defaults. Updated the documentation for that method. One thing that bothers me is how to account for the multitude of operating systems when cross compiling. If someone wants to compile with another operating system not found on current platform. How can spack check to see if it is valid?	2016-02-16 15:26:07 -08:00
Mario Melara	62b0293963	Cleaned up the file. Got rid of commented out sections of code since they weren't going to be used anyway	2016-02-16 15:23:38 -08:00
Mario Melara	31ab238306	Beginning attemps to fix concretization method to account for the new tuple architecture	2016-02-16 15:22:23 -08:00
Mario Melara	19dca4bcc9	Added some _cmp_key methods to OperatingSystem class, and also changed the way Platforms are compared. Created a mini inherited class named Arch that inherits from namedtuple. The reason for this is to override the namedtuple __str__ method to make arch tuples look prettier when printed out. Rather than Arch(platform= ... ) it prints to platform-os-target which makes directory paths to packages look cleaner.	2016-02-16 15:21:36 -08:00
Mario Melara	35a602baaf	Changed target checking to architecture checking for abi compatible	2016-02-16 15:17:57 -08:00
Erik Schnetter	9868333e8e	Shell quoting is difficult	2016-02-14 11:34:08 -05:00

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2165 commits