Commit graph

19643 commits

Author SHA1 Message Date
Harmen Stoppels
a258d40c28
kcov: add missing dependency (#21932)
kcov CMakeLists.txt generates the "kcov" executable only if
certain dependencies are found. These dependencies are 
"libbfd", "libopcodes" and "libiberty", hence the dependency 
on binutils.
2021-02-25 11:55:56 +01:00
Adam J. Stewart
127a630ba3
py-numcodecs: add v0.7.3, apple clang patch (#21944)
* py-numcodecs: add new version, apple clang patch

* py-numcodecs: add new version, apple clang patch
2021-02-25 11:33:38 +01:00
Adam J. Stewart
719bdb1673
py-cfgrib: new package at v0.9.8.5 (#21946) 2021-02-25 11:32:56 +01:00
Adam J. Stewart
7a3d216318
py-h5netcdf: new package at v0.10.0 (#21947) 2021-02-25 11:32:26 +01:00
Adam J. Stewart
8ec646b6b1
py-webob: new package at v1.8.7 (#21949) 2021-02-25 10:31:33 +00:00
Mosè Giordano
1a11a17453
libblastrampoline: Add version 3.0.0 (#21939) 2021-02-25 05:08:37 +00:00
Desmond Orton
ce5e2b5368
New package r-spades-core at 1.0.5 (#21782) 2021-02-25 05:04:04 +00:00
eugeneswalker
1d7fc4cbe1
llvm-doe+lldb: @doe: fix improper set of LLDB_ENABLE_PYTHON (#21935) 2021-02-24 19:59:12 -08:00
Adam J. Stewart
2b201ba401
Overhaul xgboost packages (#21661)
* Overhaul xgboost packages
* Don't deprecate xgboost 0.90
* Add py-xgboost@0.90, but deprecate it
* extras_require added in 1.0.0
* Deprecate py-dask-xgboost
* Simplify setting cuda arch
2021-02-25 03:42:17 +00:00
Matthijs van Waveren
d55384a46d
libjpeg: add version 9d (#21819)
* Update package libjpeg

* Change order and remove empty line.

* emove space
2021-02-25 03:20:04 +00:00
Adam J. Stewart
79e575067c
font-util: fix typo in default fonts (#21933) 2021-02-25 03:10:27 +00:00
Adam J. Stewart
f74670e210
py-azureml-dataprep: add new version (#21919) 2021-02-25 00:31:05 +00:00
Desmond Orton
e554433ca9
New package r-qs at 0.23.5 (#21779) 2021-02-24 23:12:56 +00:00
Olivier Cessenat
92a4576644
Silo: fix build errors with +silex on ubuntu18.04(#21877) 2021-02-24 15:45:53 -05:00
Rémi Lacroix
d153978fc7
Silo: Update URLs (#21880) 2021-02-24 20:41:04 +00:00
Massimiliano Culpo
29201814cc
Run clingo-cffi tests in a container (#21913)
There clingo-cffi job has two issues to be solved:

1. It uses the default concretizer
2. It requires a package from https://test.pypi.org/simple/

The former can be fixed by setting the SPACK_TEST_SOLVER
environment variable to "clingo".

The latter though requires clingo-cffi to be pushed to a
more stable package index (since https://test.pypi.org/simple/
is meant as a scratch version of PyPI that can be wiped at
any time).

For the time being run the tests in a container. Switch back to
PyPI whenever a new official version of clingo will be released.
2021-02-24 12:33:14 -08:00
Adam J. Stewart
58241c2bbd
py-azureml-train: add new version (#21929) 2021-02-24 21:15:35 +01:00
Adam J. Stewart
c54f3aca39
py-azureml-train-restclients-hyperdrive: add new version (#21928) 2021-02-24 21:15:24 +01:00
Adam J. Stewart
7e6b3344d8
py-azureml-train-core: add new version (#21927) 2021-02-24 21:15:02 +01:00
Adam J. Stewart
ec81005716
py-azureml-train-automl-client: add new version (#21926) 2021-02-24 21:14:52 +01:00
Adam J. Stewart
7ca5eb8976
py-azureml-telemetry: add new version (#21925) 2021-02-24 21:14:30 +01:00
Adam J. Stewart
64d44f2fa4
py-azureml-sdk: add new version (#21924) 2021-02-24 21:14:12 +01:00
Adam J. Stewart
5506777052
py-azureml-pipeline: add new version (#21923) 2021-02-24 21:13:56 +01:00
Adam J. Stewart
c947b5e43e
py-azureml-pipeline-steps: add new version (#21922) 2021-02-24 21:13:43 +01:00
Adam J. Stewart
d11052603e
py-azureml-pipeline-core: add new version (#21921) 2021-02-24 21:13:29 +01:00
Adam J. Stewart
a470064a6a
py-azureml-dataset-runtime: add new version (#21920) 2021-02-24 21:13:11 +01:00
Adam J. Stewart
ae09be9cdc
py-azureml-dataprep-native: add new version (#21918) 2021-02-24 21:11:39 +01:00
Adam J. Stewart
b9e445cb56
py-azureml-core: add new version (#21917) 2021-02-24 21:11:13 +01:00
Adam J. Stewart
49985316ab
py-azureml-automl-core: add new version (#21916) 2021-02-24 21:10:39 +01:00
Adam J. Stewart
86d3b062fe
py-azureml-dataprep-rslex: add new package (#21915) 2021-02-24 21:10:22 +01:00
eugeneswalker
dff08f327f
libcircle: needs libpciaccess (link dep) (#21648) 2021-02-24 20:35:00 +01:00
eugeneswalker
e3b3faca70
rempi-needs-libpciaccess (link dep) (#21652) 2021-02-24 20:34:22 +01:00
Desmond Orton
369e6e25ac
New package r-rapiserialize at 0.1.0 (#21780) 2021-02-24 19:15:49 +00:00
Paul Ferrell
e85a8cde37
Config prefer upstream (#21487)
This allows for quickly configuring a spack install/env to use upstream packages by default. This is particularly important when upstreaming from a set of officially supported spack installs on a production cluster. By configuring such that package preferences match the upstream, you ensure maximal reuse of existing package installations.
2021-02-24 10:57:50 -08:00
kuramoto-fj
d65002a676
n2p2: Add new package (#21709)
* n2p2: Add new package

* remove ,

* Resurrection of , and changed " to single

* changed example.command to example.co

* n2p2: Added v2.1.1

* n2p2: Changed the type of depends_on.
2021-02-24 10:35:27 -06:00
Harmen Stoppels
e53595c0dc
Fix target selection in rocfft (#21858) 2021-02-24 10:42:09 +01:00
Harmen Stoppels
4a9c8ec1ad
HIP: document variables, apply patches to older versions, fix build issues (#21852)
Since there are many variables being set I thought it would be a good idea to document them better and slightly simplify the logic for external vs not-external.
2021-02-24 10:37:16 +01:00
Robert Blake
0389f51bd7
numactl: no-op needed if configure can't find TLS (#21894)
* numactl: Bash needs no-op if configure can't find TLS

* Upstream has fix, will be out in next version.

https://github.com/numactl/numactl/pull/103
2021-02-23 19:13:22 -08:00
Desmond Orton
61c8bc2b19
New package r-circstat@0.2-6 (#21777) 2021-02-23 20:57:22 -06:00
Desmond Orton
df3caef9aa
New package r-fastdigest at 0.6-3 (#21778) 2021-02-23 20:54:19 -06:00
Scott Wittenburg
ee5992783c
Gitlab fix pr workflow (#21786)
Fixes for gitlab pipelines

* Remove accidentally retained testing branch name
* Generate pipeline w/out debug mode
* Make jobs interruptible for auto-cancel pending
* Work around concretization conflicts
2021-02-23 19:19:06 -07:00
Desmond Orton
a7ddaa67de
New version r-stringfish at 0.14.2 (#21785) 2021-02-23 20:16:08 -06:00
Rémi Lacroix
f6b61621e5
Sph2pipe: Update URL (#21886) 2021-02-23 18:13:08 -08:00
Carlos Bederián
e841a41357
julia: Add 1.5.3 (#21891) 2021-02-23 18:06:29 -08:00
Josh Essman
93ed1a410c
Updates to support clingo-cffi (#20657)
* Support clingo when used with cffi

Clingo recently merged in a new Python module option based on cffi.

Compatibility with this module requires a few changes to spack - it does not automatically convert strings/ints/etc to Symbol and clingo.Symbol.string throws on failure.

manually convert str/int to clingo.Symbol types
catch stringify exceptions
add job for clingo-cffi to Spack CI
switch to potassco-vendored wheel for clingo-cffi CI
on_unsat argument when cffi
2021-02-23 23:46:37 +00:00
Phil Tooley
6622856076
use package supplied autogen.sh (#20319) 2021-02-23 15:20:49 -08:00
Nathan Hanford
8ef67e2b15
New splice method in class Spec. (#20262)
* Spec.splice feature

Construct a new spec with a dependency swapped out. Currently can only swap dependencies of the same name, and can only apply to concrete specs.

This feature is not yet attached to any install functionality, but will eventually allow us to "rewire" a package to depend on a different set of dependencies.

Docstring is reformatted for git below

Splices dependency "other" into this ("target") Spec, and return the result as a concrete Spec.

If transitive, then other and its dependencies will be extrapolated to a list of Specs and spliced in accordingly.

For example, let there exist a dependency graph as follows:

        T
        | \
        Z<-H

In this example, Spec T depends on H and Z, and H also depends on Z.

Suppose, however, that we wish to use a differently-built H, known as H'. This function will splice in the new H' in one of two ways:

1. transitively, where H' depends on the Z' it was built with, and the new T* also directly depends on this new Z', or
2. intransitively, where the new T* and H' both depend on the original Z.

Since the Spec returned by this splicing function is no longer deployed the same way it was built, any such changes are tracked by setting the build_spec to point to the corresponding dependency from the original Spec.

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-02-23 13:56:00 -08:00
ketsubouchi
21349a4d25
redland bindings: new package at v1.0.17.1 (#21838) 2021-02-23 21:36:34 +01:00
Peter Scheibel
76b1d97ca5
"spack build-env" searches env for relevant spec (#21642)
If you install packages using spack install in an environment with
complex spec constraints, and the install fails, you may want to
test out the build using spack build-env; one issue (particularly
if you use concretize: together) is that it may be hard to pass
the appropriate spec that matches what the environment is
attempting to install.

This updates the build-env command to default to pulling a matching
spec from the environment rather than concretizing what the user
provides on the command line independently.

This makes a similar change to spack cd.

If the user-provided spec matches multiple specs in the environment,
then these commands will now report an error and display all
matching specs (to help the user specify).

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2021-02-23 11:45:50 -08:00
Peter Scheibel
e72ad6223a
reduce strictness of directory layout spec-equality check (#21869) 2021-02-23 09:53:07 -08:00