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Author SHA1 Message Date
Matt Belhorn
661708b7fa Fixes Flake8 indentation errors. 2016-08-01 17:27:33 -04:00
Matt Belhorn
ae167c09fc Prefers bash over sh. 
Assuming a bash interactive environment will be correctly formed on login, we
should prefer to probe the environment using a shell that reports itself as
`bash` instead of `sh` which may not source files that set the
environment modules in statements like:

```
case "$is" in
bash) test -s /etc/bash.bashrc.local && . /etc/bash.bashrc.local ;;
ksh)  test -s /etc/ksh.kshrc.local   && . /etc/ksh.kshrc.local ;;
zsh)  test -s /etc/zsh.zshrc.local   && . /etc/zsh.zshrc.local ;;
ash)  test -s /etc/ash.ashrc.local   && . /etc/ash.ashrc.local
esac
test -s /etc/sh.shrc.local && . /etc/sh.shrc.local
```
 2016-08-01 17:17:24 -04:00
becker33
14d861a41c Merge pull request #1414 from adamjstewart/fixes/filter_file 
Fix backup=True for filter_file
 2016-08-01 14:10:59 -07:00
Matt Belhorn
e864d27641 Replaces bash-ism source for POSIX-compliant . 
Change is made in order to use `/bin/sh` on systems where `/bin/sh` is not
simply an alias for `/bin/bash --norc`.
 2016-08-01 17:04:09 -04:00
becker33
49e47966a8 Merge pull request #1357 from hartzell/patch-6 
Fix doc for install_tree (cut/paste error)
 2016-08-01 13:45:20 -07:00
becker33
630ff6871d Merge pull request #1346 from glennpj/url_list_fetch 
Url list fetch
 2016-08-01 13:37:57 -07:00
Adam J. Stewart
5b79f0d04a Fix backup=True for filter_file 2016-08-01 15:35:02 -05:00
Glenn Johnson
19578d954f Fix flake8 line length errors 2016-08-01 13:37:42 -05:00
Matt Belhorn
aaa5c9e8a4 Writes default module list to terminal when debugging. 2016-08-01 12:05:29 -04:00
Paul Hopkins
cca240c8f9 Add concretize_preferences tests 2016-08-01 16:18:11 +01:00
Matt Belhorn
dc7e0899a0 Invokes subshell without user init scripts. 2016-07-30 11:38:34 -04:00
Matt Belhorn
5e97eb5ec4 Obtains default modules from a clean subshell. 
The list of default environment modules is obtained by calling

`module list -lt`

from a subshell with a wiped environment. This allows `/etc/profile` and other
init scripts to be fully sourced which should generally include loading the
default modules.

The list of default modules is then parsed for the first acceptable CPU target,
assumed to be the back_end target.
 2016-07-29 15:02:25 -04:00
Paul Hopkins
5eebb2defa Use space characters to separate preferred variants from package name and each other 2016-07-29 13:02:47 +01:00
robertdfrench
eab56b71be PEP8 Goodness 2016-07-27 13:11:24 -04:00
Matt Belhorn
3040381f03 Front-end unification for Cray systems. 
A platform to generically cover all Cray systems is introduced to avoid having
specific platforms for each of XK (XE, XT), XC, and future systems using CrayPE
and CNL.

The platform searches for 'front_end' and 'back_end' targets, in order, from:

  * Environment variables 'SPACK_FRONT_END' and 'SPACK_BACK_END'
  * A spack configuration file 'targets.yaml'
  * Parsing `/etc/bash.bashrc.local` for first loaded CrayPE CPU target.

If a back_end target is not found through one of these methods, an exception is
raised. Otherwise, the back_end is set as the default target. The shell init
script search is based on recommendations in Crayports case #144359.

No automagic way of determining front_end targets has been found (to date) so if
a front_end is not specified through configuration, it is ignored which should
leave a spack instance in a consistant state.
 2016-07-27 11:37:15 -04:00
Matt Belhorn
b1e6c58ff2 Adds __str__ method to CNL operating system class. 2016-07-27 11:25:23 -04:00
Matt Belhorn
4e6fdd12e2 Adds targets config file 2016-07-27 11:25:23 -04:00
alalazo
9c7b98dcc8 modules : handle dashes in environment variables 2016-07-26 09:03:17 +02:00
becker33
e4ced765f1 Merge pull request #1353 from epfl-scitas/qa/minor_cleanup 
qa : minor cleanup
 2016-07-25 10:34:43 -07:00
alalazo
c6a05f4a7d qa : flake8 issues fixes #1109 2016-07-25 18:22:09 +02:00
alalazo
3126ed5f21 modules : permit token expansion in configuration files 2016-07-25 18:10:27 +02:00
George Hartzell
d684b17c06 Fix doc for install_tree (cut/paste error) 
It looks like the docs for copy_tree were cut/paste from copy and still referred to installing a "file".

This fixes that.
 2016-07-25 08:45:44 -07:00
alalazo
5cfaa557d3 qa : flake8 issues 2016-07-25 10:19:58 +02:00
alalazo
23006d1195 spec : removed dead code 2016-07-25 09:05:50 +02:00
Glenn Johnson
b1e5ec0573 Make sure package has the url attribute. 
In addition to `list_url` make sure the package has the `url` attribute
set before attempting to add urls from a list. This is to cover the case
where there may be a `list_url` specified in tandem with a
`url_for_version`.
 2016-07-24 09:21:11 -05:00
Glenn Johnson
4f09e8c975 Only use list if list_url set 
This commit will make urls from list_url only checked if `list_url` is
set in the package file. This makes more sense as there is no need to
check for those if the attribute is not present. If `url` is present and
`list_url` is not then it would result in the same url. If
`url_for_version` is used then that will not work anyway.
 2016-07-23 22:56:08 -05:00
Glenn Johnson
4181fd79cd Fix flake8 errors related to lines 
Fixed the flake 8 errors that involved too many blank lines or not
enough blank lines. Basically, all of the flake8 errors except line
length errors.
 2016-07-23 19:10:09 -05:00
Glenn Johnson
b51be2bb1b Have fetch use list_url 
This PR allows archive file retrieval from urls derived from the
`list_url` setting in a package file. This allows for continued
retrieval of checksummed archive files even when they are moved to a new
remote location when a package is updated upstream.
 2016-07-23 19:09:58 -05:00
Adam J. Stewart
ebbcebac62 Use example deptypes in newly created packages 2016-07-22 13:55:00 -05:00
alalazo
00d7fd8e21 test_install : removed commented code 2016-07-22 18:14:36 +02:00
Gregory Becker
bcbe9c02da Added cray wrapper names directory to spack_env_paths so the spack compiler wrapper will remove them from the environment (prevents hang) 2016-07-21 14:50:23 -07:00
Gregory Becker
1544f98ee0 fixed flake8 errors 2016-07-21 14:36:10 -07:00
Gregory Becker
f0d5317913 fixed 2016-07-21 14:11:34 -07:00
Gregory Becker
2ae7429b18 Bug fix for cray_xc platform 2016-07-21 14:04:22 -07:00
Todd Gamblin
098af17971 Merge pull request #1208 from paulhopkins/bugfix/github1196-specify-preferred-variants 
Bugfix/github1196 specify preferred variants
 2016-07-21 08:36:19 -07:00
Paul Hopkins
00280936da Flake8 fixes to ensure qa tests pass 2016-07-21 13:12:58 +01:00
Paul Hopkins
480fe9cb9a Re-add documentation for variant preferences 2016-07-21 12:32:00 +01:00
Paul Hopkins
bd91dd9d6d Allow users to supply preferred variants via packages.yaml 2016-07-21 12:32:00 +01:00
Michael Kuhn
4e1f86881a Update documentation for recursive module loading. 2016-07-21 13:15:10 +02:00
Glenn Johnson
16f67b5bb1 Setup environment for Intel Parallel Studio 
Set up the environment for the Intel compilers and tools. This commit
does the following:

- Unset variables that were incorrect from the auto guess prefix
  inspections.
- Add a RemovePath environment_modifications_formats for dotkit.
- Set the module environment variables appropriate for the different
  variants.
- Change the component logic so that the '+all' variant works. It was
  getting split by letter and leaving COMPONENTS empty.
- Added a variant checking function.
- Added NONRPM_DB_DIR to the silent.cfg so that the product database
  goes to the installation directory.
- With the product database in prefix the code to remove the product
  database file from the home directory is no longer needed and was
  removed.
- Reformat the 'tools' variant description.

There are probably more variables needed for the '+tools' for the
'professional' product version but I do not have access to that.
 2016-07-20 19:54:35 -05:00
alalazo
b92deda41b spack setup : work as in documentation for openjpeg 2016-07-20 22:27:01 +02:00
Todd Gamblin
8856a226c7 Merge pull request #1277 from mathstuf/special-deptypes 
deptypes: support special deptypes by string
 2016-07-20 13:15:57 -07:00
Gregory Becker
eda1176ba7 added package as argument to setup_platform_environment 2016-07-20 12:26:31 -07:00
Gregory Becker
6983c1d30d Documented linker default 2016-07-20 12:04:00 -07:00
alalazo
40cb314638 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/spack/package.py
 2016-07-20 21:02:19 +02:00
Gregory Becker
412618d531 fixed flake errors 2016-07-20 11:52:16 -07:00
Gregory Becker
7db4170062 removed commented-out code 2016-07-20 11:36:47 -07:00
Gregory Becker
f4fb9a0771 Set default link type to dynamic on cray. Includes hooks for platform-based environment changes 2016-07-20 11:35:13 -07:00
Gregory Becker
106147716a fixed flake errors 2016-07-20 11:00:56 -07:00
Gregory Becker
0d18f7249c fixed flake errors 2016-07-20 10:50:18 -07:00
Gregory Becker
26d1ddc176 Improved cray_xc detection bug fix 2016-07-20 10:28:38 -07:00
Gregory Becker
4c506b36c5 Improved cray_xc detection 2016-07-20 10:25:07 -07:00
Todd Gamblin
01a361d637 Merge pull request #1288 from LLNL/features/cray_compiler_names 
Let packages call use_cray_compilers() in install to get , etc set to…
 2016-07-20 09:45:36 -07:00
Todd Gamblin
6501cba5a7 Merge pull request #1309 from LLNL/features/spack-defaults 
Add "default" configuration scope.
 2016-07-19 23:48:12 -07:00
Todd Gamblin
26480f14f9 Add "default" configuration scope. 
- Default scope is versioned with spack and can be overridden by site
  or user config.

- Default scope provides sensible default concretization preferences
  for all of Spack.

- per-platform concretization scope can be added later (to force a
  particular MPI on, e.g., Cray systems)
 2016-07-19 17:10:17 -07:00
Todd Gamblin
dd7bd4f320 Make frontend OS on Cray machines a proper linux distro. 2016-07-19 14:59:04 -07:00
Ben Boeckel
1315753e70 deptypes: support special deptypes by string 2016-07-19 16:26:18 -04:00
alalazo
acfeb5d043 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	lib/spack/spack/test/__init__.py
 2016-07-19 09:05:27 +02:00
becker33
013cfafe57 Merge pull request #1229 from suraia/fix-preferred-providers 
Fix preferred providers.
 2016-07-18 16:47:08 -07:00
Gregory Becker
218fc602fa Let packages call use_cray_compilers() in install to get , etc set to cray names 2016-07-18 15:43:21 -07:00
Todd Gamblin
4a276807b1 Merge pull request #1245 from LLNL/features/cray-detection-improvement 
The /cray_home directory is more consistent than the /cray/craype dir…
 2016-07-18 14:36:08 -07:00
Todd Gamblin
51834773b4 Merge pull request #851 from mathstuf/safer-bootstrap 
bootstrap: fall back to the default upstream URL
 2016-07-18 14:25:29 -07:00
Gregory Becker
46ee4a3a53 Using cc -craype-verbose to get cray platform type 2016-07-18 14:25:17 -07:00
Todd Gamblin
653f25d676 Merge pull request #1171 from adamjstewart/features/octave 
Allow spack create to automatically detect octave build system
 2016-07-18 12:32:32 -07:00
Michael Kuhn
19df1ea79d flake8 fix 2016-07-18 17:53:26 +02:00
Paul Hopkins
a46138dea9 More flake8 fixes for package-list 2016-07-18 13:59:58 +01:00
Adam J. Stewart
89c9bec81e Flake8 2016-07-18 07:45:28 -05:00
Adam J. Stewart
262ab40188 Update build_system_guess test with new class name 2016-07-18 07:45:28 -05:00
Adam J. Stewart
199a8af7cc Flake8 2016-07-18 07:45:28 -05:00
Adam J. Stewart
e9f42c1a94 Allow spack create to automatically detect octave build system 2016-07-18 07:45:27 -05:00
alalazo
a96eb7096d Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	share/spack/setup-env.sh
 2016-07-18 14:12:47 +02:00
Paul Hopkins
cc027148eb Flake8 fixes in cmd/package-list.py file 2016-07-18 12:52:23 +01:00
Paul Hopkins
2b3ba850b3 Fix spack package-list to correctly handle deptypes 2016-07-18 12:51:58 +01:00
Todd Gamblin
b3789a4693 Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas 
Pkg/hypre trilinos blas
 2016-07-18 03:06:37 -07:00
Todd Gamblin
cddaba8add flake8 fixes. 
- package.py
- spec.py
- test/architecture.py
 2016-07-18 02:34:24 -07:00
Todd Gamblin
192369dd2b Fix #1265: Errors in spack reindex 
- Consolidated code to read spec.yaml and database index.yaml into
  one method (`read_yaml_dep_specs()`) in spec.py.

- Code understands old hash format, tuple format, and dicts for dep
  specs, for backward compatibility.

- Spec YAML now uses a dict with keys to represent dep specs (this is
  more future-proof).

- Dep specs no longer contain !!py-tuple entries in YAML (only lists
  properly YAML-ize)

- bump database version.
 2016-07-18 01:19:07 -07:00
Todd Gamblin
73f10c9363 Fix broken spack info command after build dep merge. 
- Added a method to get dependencies of particular types from Package
- Fixed info command.
 2016-07-18 01:19:07 -07:00
Todd Gamblin
cdc2ebee90 Better error messages for spack reindex. 2016-07-18 01:14:47 -07:00
alalazo
6c00a13ed5 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	var/spack/repos/builtin/packages/swiftsim/package.py
 2016-07-18 08:49:24 +02:00
Todd Gamblin
117743863e Merge pull request #1252 from hartzell/patch-5 
Fix format of explanation of an example & question
 2016-07-17 21:20:02 -07:00
Todd Gamblin
0e8bf79fa4 Merge pull request #1240 from epfl-scitas/truncated_documentation 
doc : fixes #1239
 2016-07-17 20:59:36 -07:00
alalazo
dc671ad037 docs : substituted None with empty cell 2016-07-17 22:17:52 +02:00
Denis Davydov
9ea4f80f15 flake8 fixes 2016-07-16 07:58:51 +02:00
Denis Davydov
992250ddea add to_lib_name() to get library name from a path 2016-07-16 07:24:05 +02:00
Michael Kuhn
d61190c3ff Explicitly request zmpi in module blacklist test. 2016-07-16 00:48:04 +02:00
becker33
63101e9914 Merge pull request #1261 from adamjstewart/features/create-deptype 
Automatically add deptype to newly created packages
 2016-07-15 15:10:10 -07:00
Adam J. Stewart
8c1cc44522 Automatically add deptype to newly created packages 2016-07-15 16:43:25 -05:00
becker33
e822257565 Merge pull request #1251 from hartzell/patch-4 
Minor typo fix
 2016-07-15 13:51:02 -07:00
alalazo
833b0ac282 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/spack/__init__.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/openjpeg/package.py
 2016-07-15 11:03:02 +02:00
alalazo
893a5565fe Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/spack/__init__.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/openjpeg/package.py
 2016-07-15 11:02:55 +02:00
alalazo
1f3cb2b93c Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	lib/spack/spack/cmd/module.py
 2016-07-15 10:37:27 +02:00
Ben Boeckel
5d152edcaf spec: assign namespaces to the full dependency DAG 2016-07-14 16:33:48 -04:00
Ben Boeckel
faa3d43d9c package: mention the package that is no concrete 2016-07-14 16:33:38 -04:00
Ben Boeckel
45c675fe7f spack: introduce dependency types 
deptypes: allow for different queries

For things like Python modules, they are required for the build and
runtime, but rather than adding a new parameter for what to query across
the dependency DAG, just expose the recursive query parameter.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
bae97d17d0 test: use file:// url for git repos 2016-07-14 16:21:45 -04:00
Ben Boeckel
6d2ec9baf7 test/stage: use os.path.realpath on the test paths 
When var/spack/stage is a symlink, the tests fail since realpath is used
on the resulting path, but not the original path, so the string compare
fails. Smarter path testing might be a better option.
 2016-07-14 16:21:45 -04:00
Ben Boeckel
b4682c8ca3 directory_layout: fix error path when specs conflict 2016-07-14 16:21:45 -04:00
Ben Boeckel
e275b567eb typos: fix some typos 2016-07-14 16:21:45 -04:00
George Hartzell
3e718920d1 Remove extraneous letter 'p' 
It got in there by mistake, now it's gone.
 2016-07-14 09:40:47 -07:00
George Hartzell
3051c3d71d Fix format of explanation of an example & question 
This list was not formatted correctly on [the ReadTheDocs site](http://software.llnl.gov/spack/basic_usage.html#specs-dependencies).

I'm not a .rst expert, but I think that it was improperly indented.

The example includes an `arch=...` string but *arch* is not listed in the valid compiler flag specifiers or architecture specifiers.  Should it be, or is it considered an "optional variant specifier?
 2016-07-14 08:31:07 -07:00
George Hartzell
e052aaf44d Minor typo fix 
the packages that depends on => the packages that depend on
 2016-07-14 08:19:32 -07:00
alalazo
b8fccb5f61 CMakePackage : added hook for roo CmakeLists.txt, removed duplicated code from build_environment.py 2016-07-14 12:04:24 +02:00
alalazo
1ecea4c2f1 log : refactored acquire and release semantic to meet the context manager protocol 2016-07-14 09:34:01 +02:00
alalazo
00b8e0b567 package.py : joined and simplified try/except blocks in do_install 2016-07-14 09:11:44 +02:00
Michael Kuhn
5ffc50732b flake8 fixes 2016-07-13 23:05:08 +02:00
alalazo
9d66b85492 log : changed semantic for start / join (now it's explicit) 2016-07-13 22:51:12 +02:00
alalazo
90b131260b log : changed semantic for start / join (now it's explicit) 2016-07-13 22:50:39 +02:00
alalazo
7cedd620f1 package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples 2016-07-13 17:36:06 +02:00
alalazo
0e2afedb7f doc : fixes #1239 2016-07-13 12:43:48 +02:00
alalazo
ad16830f71 log : added timeout to avoid deadlocks on daemon join 2016-07-13 11:20:23 +02:00
alalazo
468a6431f9 package.py : workaround for a known bug that was not fixed in python 2.6 
https://bugs.python.org/issue1515
 2016-07-13 11:08:19 +02:00
alalazo
5cc59507f7 package.py : hdf5 and lzo have examples of run_tests 2016-07-13 09:27:09 +02:00
alalazo
97c2224cd6 package.py : extra arguments, fixed inheritance issue 
- added attribute to hold extra arguments in PackageBase instances
- fixed registration from within packages
- examples : hdf5, lzo
 2016-07-13 09:27:09 +02:00
alalazo
813cb032c4 package.py : updated logic to log.py rework 
Conflicts:
	lib/spack/spack/package.py
 2016-07-13 09:27:09 +02:00
alalazo
513cdd580e do_install : can stop at an arbitrary phase 
Now uses a StopIteration exception as a signal
 2016-07-13 09:27:09 +02:00
alalazo
9af964a6d6 log_output : moved from os.fork to multiprocessing.Process 2016-07-13 09:27:09 +02:00
alalazo
440e71ff13 build_environment : moved from os.fork to multiprocessing.Process 2016-07-13 09:27:09 +02:00
alalazo
857d7bfe0f do_install : can stop at an arbitrary phase 
The mechanism would be simpler if we could leverage exceptions to raise signals. Unfortunately forking does not permit to do so.
 2016-07-13 09:27:09 +02:00
alalazo
a43c63f149 package : added EditableMakefile 
Modifications :
- added EditableMakefile to PackageBase subclasses
- astyle modified as an example
- preliminary hook to stop at a certain phase of install
 2016-07-13 09:27:09 +02:00
alalazo
8f75d34331 package : added a stub for AutotoolsPackage, examples in szip and swiftsim 2016-07-13 09:27:09 +02:00
alalazo
8ed028e2d6 package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases 2016-07-13 09:27:09 +02:00
alalazo
a36f3764af package : added hooks for generic phases 2016-07-13 09:27:09 +02:00
Todd Gamblin
27aa265abd Merge pull request #1211 from hartzell/patch-3 
Typo: verison -> version
 2016-07-12 13:53:52 -07:00
Michael Kuhn
b7d9b58cc5 Fix preferred providers. 2016-07-12 19:57:08 +02:00
Todd Gamblin
283d621b6e Add documentation for fetching submodules. 2016-07-11 13:27:37 -07:00
Todd Gamblin
86b1b28906 Add submodules option for git fetching. 2016-07-11 13:27:35 -07:00
alalazo
5f861e075c Merged develop into branch 2016-07-11 20:57:55 +02:00
Todd Gamblin
7f6541ef02 Merge pull request #1190 from davydden/feature/version_dev 
add special treatment of @develop version
 2016-07-11 11:31:54 -07:00
Denis Davydov
306e601d4e document special treatment of development version 2016-07-11 19:50:33 +02:00
George Hartzell
fbaff33f3f Typo: verison -> version 2016-07-11 09:44:20 -07:00
George Hartzell
1682257b35 Typo: verison -> version 2016-07-11 09:42:49 -07:00
Denis Davydov
b29d5e6032 add special treatment of develop version 2016-07-10 14:21:52 +02:00
Todd Gamblin
b0f4052bd8 Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes 
--run-tests install argument and petsc fixes
 2016-07-09 12:10:16 -07:00
Todd Gamblin
c086ccdab6 Merge pull request #1200 from glennpj/lowpackname 
Have ``spack create`` default to lower case name for package
 2016-07-08 13:29:52 -07:00
Glenn Johnson
33d0660abc Have `spack create` default to lower case name 
This will create package directories with lower case names when using
`spack create`. The documentation was modified to reflect this.
 2016-07-08 15:11:37 -05:00
George Hartzell
1b9e8a0e65 Fix typo 
Comamnds -> Commands
 2016-07-08 11:01:08 -07:00
Todd Gamblin
b9148b1751 Merge pull request #1125 from NERSC/docs/cray 
Update documentation for use on Cray
 2016-07-06 15:06:20 -07:00
Gregory Becker
403a55afb2 Minor bug fix 2016-07-06 14:54:25 -07:00
Gregory Becker
663b30b3e8 Update target autodetection for linux platform 2016-07-06 14:54:22 -07:00
Denis Davydov
081918d71a add --run-tests argument for install() 2016-07-06 22:45:30 +02:00
Todd Gamblin
03fdb2058a Merge pull request #1176 from epfl-scitas/features/version_minor_improvements 
spack.Version : like a duck!
 2016-07-06 09:01:19 -07:00
alalazo
9b926a480f qa : flake8 issues 2016-07-06 17:03:32 +02:00
alalazo
780a57367d version : modified __getitem__ to return either an item or a Version instance + unit tests 2016-07-06 17:00:48 +02:00
alalazo
32e086f44a version : modified __repr__ to return a string representation of the object + unit tests 2016-07-06 15:24:10 +02:00
William Killian
1f64f08cb3 (bugfix) fixed typo of spec --> raw_spec 2016-07-05 13:32:37 -07:00
Todd Gamblin
d687e332ad Fix compile bugs for gcc on Mac OS X with macports. 
- add macports to things that are cleaned out of the environment.
- linker incompatibilities cause issues with packages like OpenSSL.
- also clean up NOQA stuff in OpenSSL
 2016-07-04 22:59:02 -07:00
Todd Gamblin
690937f953 Add --dirty option to spack install. 
- Allow install to be run without cleaning the environment.
 2016-07-04 22:58:01 -07:00
Todd Gamblin
6bac1598f6 Merge branch 'fix-archive' of https://github.com/mwilliammyers/spack into mwilliammyers-fix-archive 2016-07-04 21:35:33 -07:00
Todd Gamblin
890df7153a Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage 2016-07-04 00:27:32 -07:00
alalazo
6d988dde8d qa : fixed flake8 issues 2016-07-02 12:54:36 +02:00
alalazo
3100c5948a module : added unit tests 2016-07-02 12:14:30 +02:00
Glenn Johnson
31e9ded768 Remove more variables from build environment 
Remove the LIBRARY_PATH and CPATH environment variables before building
a package.
 2016-07-01 20:59:14 -05:00
alalazo
d10fceaacc spack commands : refactoring of cli arguments and common utiities. Implemented suggestions on spack module loads 
- Common cli arguments now are in their own module
 - Moved utilities that can be reused by different commands into spack.cmd.__init__.py
 - Modifications to `spack module loads`
 2016-07-01 23:06:07 +02:00
alalazo
f0f7b23c8a module : added rm subcommand, encapsulated logic for constraints in argarse.Action subclass 2016-07-01 14:27:55 +02:00
alalazo
fe4ef286f2 module : added the command 'load-list' 2016-07-01 12:38:04 +02:00
Mario Melara
56adb5d9a5 Change arch spec and fix typo 
Changed old arch specs to new arch specs. Changed intallation to
installation
 2016-06-30 17:03:07 -07:00
Mario Melara
16a4c49f98 Remove Cray examples of config files 
Removed examples of Cray config files and added them under Spack on
Cray. Any users of Cray can just look at the Spack on Cray section to
get an idea of what's used. If they want more information they can click
links to the sections.
 2016-06-30 17:01:18 -07:00
Mario Melara
d784d561fc Add more documentation fix arch spec 
Added more documentation for Spack on Cray. Also fixed the architecture
spec to be linux-debian7-x86_64 since it was reversed in the previous
commit.
 2016-06-30 16:59:36 -07:00
Massimiliano Culpo
6793a54748 --prefix : defaults to empty string 2016-06-30 23:18:32 +02:00
Massimiliano Culpo
ba1ada5424 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh_reworking 
Conflicts:
	lib/spack/spack/cmd/module.py
 2016-06-30 22:19:46 +02:00
alalazo
a770151359 module : minor improvement to output formatting 2016-06-30 16:49:24 +02:00
Elizabeth Fischer
6327877a6f PEP-8 2016-06-30 09:19:57 -04:00
Elizabeth Fischer
50ac98bc04 Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage 
# Conflicts:
#	lib/spack/docs/packaging_guide.rst
#	lib/spack/spack/package.py

Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently).  Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`.  This got added back in from develop.
 2016-06-30 09:13:24 -04:00
alalazo
ba87937fff module : added detection of file name clashes 2016-06-30 13:44:49 +02:00
alalazo
1b7eedbb7d modules.yaml : added hash_length as a new keyword 
config :
- added `hash_length` under the modules section

EnvModules :
- take into consideration hash_length when constructing `file_name`
- added logic to warn and skip module file writing in case of file name clash
 2016-06-30 12:56:47 +02:00
Todd Gamblin
0e422dec8c Merge pull request #1141 from adamjstewart/fixes/license_docs 
Fix missing code blocks in licensed software documentation
 2016-06-30 02:22:38 -07:00
Todd Gamblin
bc2fa76588 Merge pull request #1146 from scheibelp/features/doc-caching 
added documentation for automatic caching of resources fetched during installs
 2016-06-30 02:13:16 -07:00
Todd Gamblin
30d083c6b7 Merge branch 'efischer/160401-RecursiveModules' of https://github.com/citibeth/spack into citibeth-efischer/160401-RecursiveModules 2016-06-30 02:12:00 -07:00
Peter Scheibel
cfd380d514 added documentation for automatic caching of resources fetched during installs 2016-06-29 18:23:40 -07:00
Ben Boeckel
5f720f9b7c flake8: appease the style checker 2016-06-29 14:49:58 -04:00
Ben Boeckel
e3e94f0ac9 bootstrap: name the current branch the same as the remote 2016-06-29 14:49:19 -04:00
Ben Boeckel
89bf5f4045 bootstrap: allow using alternate remotes 
If you want to bootstrap from a fork, the `--remote` option may be used
to select it.

Also limit the branches to 'develop' and 'master' if the remote is
'origin' since those are the actual integration branches used (other
branches on 'origin' are just PR branches).
 2016-06-29 14:49:19 -04:00
Ben Boeckel
7ec191ce0b bootstrap: use the currently checked out branch 
The `master` branch is not really where Spack development happens, so
default to it, but use the user's current branch if it's there.
 2016-06-29 14:49:19 -04:00
Ben Boeckel
6f69c01915 bootstrap: fall back to the default upstream URL 
Fixes #352.
 2016-06-29 14:49:19 -04:00
Adam J. Stewart
06de8c56af Fix missing code blocks in licensed software documentation 2016-06-29 12:35:38 -05:00
Todd Gamblin
eb388306fd Merge pull request #1112 from adamjstewart/features/dependencies 
Make spack create automatically add dependencies for build system
 2016-06-29 07:57:33 -07:00
Todd Gamblin
c996632113 Add spack purge --cache to purge local archive cache. 2016-06-29 01:41:55 -07:00
Todd Gamblin
bc1320d83a Merge branch 'features/cache-archives' of https://github.com/scheibelp/spack into scheibelp-features/cache-archives 2016-06-29 00:57:26 -07:00
alalazo
b71d430af6 module : can regenerate single module files, homogenized cli options 
spack module :
- refresh accepts a constraint
- find and refresh share common cli options
- ask for confirmation before refreshing
- deleting the module file tree is now optional
 2016-06-28 19:28:18 +02:00
mwilliammyers
0384794912 Fix #1019 - cannot create mirror for git spec 2016-06-27 16:00:38 -06:00
Mario Melara
26325fe812 Add missing link to external packages 
Adding missing _sec-external_packages to link with external packages
page
 2016-06-27 14:35:56 -07:00
Mario Melara
7fb45e4bfd Update documentation for use on Cray 
Updating how to use compilers.yaml on Cray as well as setting up
external packages. Also includes what needs to be set up for usage on
Cray and explains what needs to be done to get Spack properly working.
Also explain the architecture spec and what it does.
 2016-06-27 13:52:48 -07:00
Todd Gamblin
3ea9d1e665 Merge pull request #1122 from LLNL/bugfix/newarch-sys_type 
Bugfix/newarch sys type
 2016-06-27 10:07:03 -07:00
Adam J. Stewart
798dabc8f2 Forgot the unknown key/value pair 2016-06-27 09:01:53 -05:00
Todd Gamblin
0185226042 Merge pull request #1121 from LLNL/bugfix/module-directory-pollution 
Make MockPackagesTest use a different module location.
 2016-06-27 02:25:32 -07:00
Todd Gamblin
99c3ed56fa Add new sys_type method that prints out the *full* arch descriptor. 2016-06-27 02:19:26 -07:00
Todd Gamblin
305d5698df Rename spack.architecture.sys_type() to spack.architecture.platform() 2016-06-27 02:19:08 -07:00
Todd Gamblin
a15aee5d8e Make MockPackagesTest use a different module location. 
- ensures anything tests create is blown away.
 2016-06-27 01:22:03 -07:00
Todd Gamblin
b4c36164b5 Fixes #760: spack test leaves builtin.mock packages in DB 
- install_layout was redirected by the install test, but not the DB.
- redirect the DB now, as well.
 2016-06-27 00:55:16 -07:00
Todd Gamblin
73213ac59d Merge pull request #984 from epfl-scitas/module_file_explicit_load 
module files : explicit load and mnemonic suffixes
 2016-06-26 23:33:48 -07:00
Todd Gamblin
19b69ce3a5 Merge pull request #1097 from citibeth/efischer/160622-DBErrors 
Improved Spack database errors to help users fix them.
 2016-06-26 22:45:44 -07:00
Todd Gamblin
ece72e5337 Merge pull request #1030 from opoplawski/external 
Remove last two remaining from external imports
 2016-06-26 22:41:58 -07:00
Todd Gamblin
8f28df1d14 Merge pull request #1094 from epfl-scitas/documentation/remove_packages_yaml_inconsistencies 
packages.yaml : removed references to a never implemented feature
 2016-06-26 22:37:43 -07:00
Todd Gamblin
30993357d7 Merge pull request #1105 from adamjstewart/fixes/filter_file 
Fix backup logic in filter_file
 2016-06-26 22:33:09 -07:00
Adam J. Stewart
ea88d9cfe9 Make spack create automatically add dependencies for build system 2016-06-24 16:43:31 -05:00
Todd Gamblin
055f7f4ab6 Add package_dir method to package.py. 2016-06-24 12:33:53 -07:00
Adam J. Stewart
71a297f121 Fix backup logic in filter_file 2016-06-23 16:44:41 -05:00
Todd Gamblin
27e9bc6d02 Make sbang handle lua 
- use --! instead of #! for patched lua scripts.
 2016-06-23 00:03:23 -07:00
Elizabeth Fischer
8f846d507d Added --prefix to module command. 2016-06-22 15:36:04 -04:00
Elizabeth Fischer
10810482bc Update database.py 
PEP8
 2016-06-22 14:03:32 -04:00
Elizabeth Fischer
ffe9e77e36 Improved Spack database errors to help users fix them. 2016-06-22 12:11:09 -04:00
Robert.French
ff3e56cf9a Import which from spack.util.executable; Fixes #1095 2016-06-22 15:25:32 +00:00
alalazo
f29b55957a documentation : removed references to never implemented features 2016-06-22 17:08:02 +02:00
Todd Gamblin
58cff1290d Make environment test less sensitive to user config files. 2016-06-21 00:19:28 -07:00
Todd Gamblin
0521b9bb32 Fix merge error. 2016-06-21 00:08:12 -07:00
Todd Gamblin
f18e1a9371 Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera 2016-06-20 23:53:48 -07:00
Todd Gamblin
3f90fee614 Merge pull request #1085 from NERSC/bugfix/compiler_find 
Bugfix/compiler find and gfortran fix.
 2016-06-20 23:46:13 -07:00
Todd Gamblin
70a25c4587 Change --insensitive to --sensitive in spack list 2016-06-20 17:17:25 -07:00
Todd Gamblin
cbd5a0a6e3 Merge branch 'list-ext' of https://github.com/trws/spack into trws-list-ext 2016-06-20 17:13:32 -07:00
Todd Gamblin
db81a74d66 Merge pull request #939 from davydden/docs/blas_lapack 
document blas and lapack usage in packages
 2016-06-20 17:11:09 -07:00
Todd Gamblin
a3431c5a73 Merge pull request #1047 from epfl-scitas/source_diffs_in_environment_modifications 
feature : construct environment modifications sourcing files
 2016-06-20 16:56:30 -07:00
Mario Melara
d515877d91 Add init_config args in compilers/__init__ 2016-06-20 16:20:52 -07:00
Mario Melara
4c4f3e9747 Add init_config to compiler_find method 2016-06-20 16:20:33 -07:00
alalazo
5aa3131385 qa : fixed flake8 issues 2016-06-20 21:11:33 +02:00
alalazo
b86e3047f3 openmpi : revert part of #1079 (OpenMPI can be built without fortran) 
Building OpenMPI without fortran is possible, and was already handled.
 Raising an install error we effectively renounce at clang+OpenMPI.

 build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
 2016-06-20 20:46:11 +02:00
Tom Scogland
45482187b4 one more typo issue 2016-06-20 11:42:35 -07:00
Tom Scogland
f6aa864bc4 adding quotes to make sure the glob is interpreted correctly 2016-06-20 11:41:36 -07:00
Tom Scogland
ac728d3e60 fixing capitol->capital typos 2016-06-20 11:38:39 -07:00
Tom Scogland
6180e6c047 automatic case-insensitive like smartsearch, docs 
New documentation for the new options, also case insensitive by default
unless the user includes an upper-case character in their pattern.
 2016-06-20 11:33:56 -07:00
Mario Melara
6fb7b0fcf7 Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find 
Forgot to pull branch changes before
 2016-06-20 10:59:28 -07:00
Mario Melara
88888f5ba0 Got rid of unnecessary module arg 2016-06-20 10:58:20 -07:00
Mario Melara
1303b5a6a9 Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config 2016-06-20 10:57:58 -07:00
Mario Melara
fe30113502 Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work 2016-06-20 10:57:10 -07:00
Tom Scogland
0377f3580b switching argument naming 2016-06-20 10:53:19 -07:00
Adam J. Stewart
aa86488fd9 Flake8 2016-06-20 12:47:17 -05:00
Todd Gamblin
42ff1aaa75 Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup 
do not create shebang.bak file
 2016-06-20 10:45:42 -07:00
Todd Gamblin
c09111bbef Merge pull request #1053 from davydden/pkg/dealii_suite_update 
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
 2016-06-20 10:32:52 -07:00
Adam J. Stewart
be407f531e Move around extension logic 2016-06-20 12:24:45 -05:00
Adam J. Stewart
28b2e36230 Add ctest executable 2016-06-20 12:24:45 -05:00
Adam J. Stewart
afff40e584 Flake8 fix for R templates 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5dfc2052bd Flake8 change 2016-06-20 12:24:45 -05:00
Adam J. Stewart
98d03c74e1 Add support for less common compression schemes 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5a55bb3f8d Modify R installation template 2016-06-20 12:24:45 -05:00
Adam J. Stewart
79fae306f6 Add extensions for Python/R and more configurable install 2016-06-20 12:24:45 -05:00
Adam J. Stewart
9500f2718b More Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
a21e845ce7 Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
2220784eda Add scons support, .zip support, and Cantera package 2016-06-20 12:24:45 -05:00
Peter Scheibel
1dc62e8a19 Merge branch 'develop' into features/cache-archives 2016-06-20 10:16:02 -07:00
Todd Gamblin
ce105e9bbe Merge branch 'bugfix/compiler_find' into develop 2016-06-20 09:34:25 -07:00
Todd Gamblin
84e21703bd Test no longer assumes compilers exist in /usr. 
- makes a fake gcc instead, and tests that.
 2016-06-20 09:28:39 -07:00
Mario Melara
64c83638ff Adding test to list of test_names 2016-06-18 11:11:46 -07:00
Mario Melara
15e6b88a8b Adding new tests for compiler command for spack's test suite 2016-06-18 10:51:38 -07:00
Mario Melara
36275f8e6e More clean up of init_config, also no need for a different find_compilers function. 2016-06-18 10:50:55 -07:00
Mario Melara
ccb62b4620 Getting rid of no longer used init_config arg 2016-06-18 10:49:39 -07:00
Todd Gamblin
f9efb746d7 Merge pull request #1032 from eschnett/eschnett/cc-quotes 
Add quotes around file name
 2016-06-18 08:57:18 -07:00
alalazo
9e0c20c794 environment : filter the current environment 
Previously only the environment obtained after sourcing the file was filtered.
This caused the appeareance of spurious unset commands in the list.
 2016-06-18 13:39:08 +02:00
alalazo
a17d1efe7c Merge branch 'develop' of https://github.com/LLNL/spack into features/source_diffs_in_environment_modifications 
Conflicts:
	lib/spack/spack/test/environment.py
 2016-06-18 13:31:29 +02:00
alalazo
670669ef80 qa : fixed flake8 issues 2016-06-18 13:10:35 +02:00
alalazo
a33077b77f unit tests : fixed test_alter_environment 2016-06-18 13:07:14 +02:00
alalazo
51cf847647 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_file_explicit_load 
Conflicts:
	lib/spack/spack/test/modules.py
 2016-06-18 13:06:37 +02:00
Mario Melara
8af1c5fc8f Merge remote-tracking branch 'upstream/develop' into develop 
"Updating NERSC branch"
 2016-06-18 00:52:06 -07:00
Mario Melara
c703bfb54d Got rid of init_config flag since we don't need it. Instead we update the cache config if there are any changes 2016-06-18 00:48:08 -07:00
Todd Gamblin
4569df025e Merge pull request #1060 from mathstuf/no-break-long-words 
tty: do not break long words
 2016-06-17 14:51:26 -07:00
Todd Gamblin
d7f48e1ff0 Merge pull request #1061 from mathstuf/reindex-preserve-explicit 
reindex: preserve 'explicit' flags
 2016-06-17 14:29:47 -07:00
Todd Gamblin
0bbbfc2ef7 Merge pull request #946 from LLNL/features/intel2 
Intel software packages and license enhancements
 2016-06-17 14:28:39 -07:00
Tom Scogland
8770f2a0ea fixing last flake8 issue 2016-06-17 13:42:27 -07:00
Tom Scogland
0743ef4d0b fixing flake8 issues 2016-06-17 13:32:28 -07:00
Tom Scogland
a4ac99877a cmd/list: adding description search and glob by default 2016-06-17 12:00:35 -07:00
Mario Melara
fe5eec5230 'find and 'add' are options for adding compilers via command line 2016-06-17 09:16:03 -07:00
Mario Melara
df84fe0b58 Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter. 2016-06-16 18:10:38 -07:00
Todd Gamblin
005827ab23 Replace 2.6-incompatible skipIf with a conditional. 
- skipIf doesn't work with Python 2.6.
 2016-06-16 12:12:29 -07:00
Todd Gamblin
f60ae61652 remove dead code, cleanup. 2016-06-16 10:44:15 -07:00
Todd Gamblin
8867adf942 simplify instance check. 2016-06-16 10:43:36 -07:00
Todd Gamblin
c7dfa1699a rename Mac OS X to macos 2016-06-16 10:43:12 -07:00
Mario Melara
6b03770602 Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not. 2016-06-16 09:44:37 -07:00
Todd Gamblin
88b73bacdb Merge branch 'features/newarch' into develop 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
 2016-06-16 03:03:26 -07:00
Todd Gamblin
17b868381f Fixes #460: Do not show variants by default in spack find. 
This does two things:

1. By default `spack find` no longer shows variants.  You have to
   supply `-v` to get that

2. This improves the `colify` implementation so that it no longer pads
   the rightmost column.  This avoids the issue where if one spec was
   too long in the output, *all* specs would have space padding added
   to that width, and it would look like the output of `spack find`
   was double spaced.  This no longer happens -- the one bad line
   wraps around and the other lines are now single-spaced when you use
   `-v` with boost.
 2016-06-16 02:55:33 -07:00
Todd Gamblin
88b671f8b1 Just call old os "unknown" 2016-06-16 02:06:19 -07:00
Todd Gamblin
f3d6818d5c be more tolerant when parsing new specs. 2016-06-16 00:55:39 -07:00
Todd Gamblin
c90cc465f5 Add __contains__ to arch to satsify old packages. 2016-06-16 00:54:59 -07:00
Gregory L. Lee
d4df4375d5 removed unused import per flake8 report 2016-06-15 20:32:08 -07:00
Gregory L. Lee
1724ff5658 do not create shebang.bak file 2016-06-15 20:21:02 -07:00
Gregory Becker
3fcd54203c two minor fixes 2016-06-15 16:44:38 -07:00
Gregory Becker
2fc9ac4036 Two minor fixes 2016-06-15 16:39:39 -07:00
Ben Boeckel
716f12dd58 reindex: preserve 'explicit' flags 
Look up in the old database whether the spec was explicit or not and
preserve it into the new database.

Fixes #1050.
 2016-06-15 12:48:40 -04:00
Denis Davydov
3d3a26cd9a flake8 fixes for filesystem.py 2016-06-15 18:31:10 +02:00
Ben Boeckel
36decbfa69 tty: do not break long words 
These "words" tend to be file paths which are best left unbroken.

Fixes #1057.
 2016-06-15 12:22:35 -04:00
Denis Davydov
a860a3d614 superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version 2016-06-15 18:21:13 +02:00
Massimiliano Culpo
30c9d976f6 environment : added more logic to treat append and prepend path 2016-06-12 18:54:56 +02:00
alalazo
5300ffac7f qa : fixed flak8 checks 2016-06-12 15:11:26 +02:00
alalazo
a6681f2d7f environment modules : added function to construct them from source files 2016-06-12 15:06:17 +02:00
alalazo
3737169450 qa : fixed style and a bug reported by flake8 
lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306
Flake8 found errors.
 2016-06-11 12:57:46 +02:00
alalazo
eb9b00b210 versions : added unit tests for the new properties 2016-06-11 12:44:21 +02:00
Gregory Becker
0fea167f97 I made a hash of that minor merge 
Merge commit '4eeb' into features/newarch
 2016-06-10 16:28:09 -07:00
Gregory Becker
992bcac794 changed compiler yaml format 2016-06-10 16:26:02 -07:00
Erik Schnetter
2a4d440003 Add quotes around file name 
$input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.
 2016-06-08 19:14:01 -04:00
Orion Poplawski
7ce08c4216 Remove last two remaining from external imports 2016-06-08 13:51:31 -06:00
Peter Scheibel
3b71d78f3c rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors) 2016-06-08 09:57:56 -07:00
alalazo
564483936f qa : fixed flake8 issues 2016-06-08 16:33:49 +02:00
alalazo
f4a39457de lmod : updated package and dependencies 2016-06-08 15:35:15 +02:00
Peter Scheibel
a2754894ea (1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit) 2016-06-07 16:26:54 -07:00
Mario Melara
5715799d4e Added to_dict back into operating system 2016-06-07 14:15:28 -07:00
Mario Melara
4925be0bc4 Load external modules 2016-06-07 13:22:47 -07:00
Peter Scheibel
de1ec4be8b change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version. 2016-06-06 12:26:13 -07:00
Mario Melara
196737c217 Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters 2016-06-06 10:29:19 -07:00
Mario Melara
835982faed Changed OS name to CNL10 so that we properly find the compilers for the test platform 2016-06-06 09:08:59 -07:00
Mario Melara
864191b6ed Got rid of unnecessary global keyword 2016-06-06 09:06:58 -07:00
Mario Melara
5b023bb0a1 Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system 2016-06-06 09:05:14 -07:00
Mario Melara
c7b48f6fef Passing full arch for proper compiler spec so that we can use the platform to get the operating system 2016-06-06 09:04:24 -07:00
Mario Melara
f751d68177 Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding. 2016-06-06 09:03:32 -07:00
Tom Scogland
30e8e77fb6 Merge pull request #869 from brettviren/feature/views 
Feature/views
 2016-06-05 11:31:48 -07:00
alalazo
bdd874eb7f autopep8 2016-06-04 18:09:28 +02:00
alalazo
02cadb882b unit test : suffixes 2016-06-04 18:09:06 +02:00
alalazo
669caefccb unit test : wrong naming scheme in conflict 2016-06-04 18:00:18 +02:00
alalazo
d43cfefa43 autopep8 2016-06-04 17:24:52 +02:00
alalazo
2d6db06fca unit test : prerequisites 2016-06-04 17:24:27 +02:00
alalazo
ffa6fed3a3 unit test : custom module file load 2016-06-04 17:20:06 +02:00
alalazo
422d3d4db6 unit test : write a whitelisted module 2016-06-04 16:46:15 +02:00
alalazo
09b1daa7b9 unit test : write a blacklisted module 2016-06-04 16:23:41 +02:00
alalazo
408aa10210 unit test : whitelist 2016-06-04 16:18:15 +02:00
alalazo
a3f39c2315 autopep8 : fixed style issues 2016-06-04 11:23:23 +02:00
alalazo
97e2834816 unit test : wrong tag for dependencies 2016-06-04 11:20:35 +02:00
alalazo
2207ab8f23 unit test : inspect_path 2016-06-04 10:44:37 +02:00
alalazo
0e71b5dde8 unit test : update dictionary extending lists 2016-06-04 10:07:13 +02:00
Mario Melara
30c204a0a5 Made a merge commit earlier with Todd fixing all_platforms, but changed how architecture looks in spec.yaml. Just three strings. Also made some flake8 formatting changes 2016-06-03 16:16:59 -07:00
Mario Melara
bc557cc765 Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-06-03 15:59:00 -07:00
Mario Melara
24d160e93e Changed how architecture looks like in spec.yaml. Now it's only three strings, platform, os, target in spec.yaml. Also did some flake8 formatting changes 2016-06-03 15:57:54 -07:00
Todd Gamblin
9d04dccb79 Update version to correspond to master. 2016-06-02 01:20:40 -07:00
Gregory Becker
817f43f927 Fixed config format to allow default compiler flags 2016-05-31 13:39:25 -07:00
Todd Gamblin
7bdf63a0fa Fix some bugs in architecture. 2016-05-31 03:01:05 -07:00
Todd Gamblin
24ee32d7b0 More flexible reading of specs from DB, formatting. 2016-05-30 22:02:22 -07:00
Todd Gamblin
f3f0122f11 Merge branch 'develop' into features/newarch 2016-05-30 13:54:53 -07:00
Mario Melara
b14ba31250 Quick fix for mock compilers.yaml to work on linux machines. 2016-05-30 13:22:08 -07:00
Mario Melara
716991775d Added extra check on linux machines, since most linux machines don't have module system 2016-05-30 13:09:41 -07:00
Mario Melara
08a9d80ebc Changed platform to py_platform to avoid name collisions. The naming collisions resulted in an error on linux machines 2016-05-30 13:07:20 -07:00
Mario Melara
f96c979024 Added a conditional to check if package is external 2016-05-30 13:05:49 -07:00
Todd Gamblin
e8b4d5fb6f Performance boost: reduce instantiations of re.Scanner 
- Lexer is the same for every Spec parser in spack, so don't build it
  every time.

- This improves time to import package.py files a lot, as a Lexer
  doesn't have to be constructed for every spc in the packages.

- To concretize dealii:
  - Before: ~20 sec
  - After:  ~6 sec
 2016-05-28 23:05:23 -07:00
Mario Melara
22ca72e7b9 Added conditional skipIf to test_external_modules, darwin machines don't have tcl modules so skip this test and let user know why 2016-05-28 12:40:29 -07:00
Mario Melara
69585cb6e3 Added elcap compilers 2016-05-28 12:39:43 -07:00
Mario Melara
f0a9c45207 Adding external to mock config 2016-05-28 10:13:57 -07:00
Mario Melara
98a4a9f2cc Adding test for external modules 2016-05-28 10:13:22 -07:00
Mario Melara
becec8ac7e Added external module check in normalize to avoid infinite loop 2016-05-28 10:12:53 -07:00
Gregory Becker
9dad7c2ace re-merged mainline develop 2016-05-27 13:13:19 -07:00
Gregory Becker
f49644cdea Fixed typo in linux platform 2016-05-27 12:37:58 -07:00
Gregory Becker
023504ed64 Fixed the external modules bug 2016-05-27 12:26:59 -07:00
Todd Gamblin
285646bbfa Merge pull request #981 from epfl-scitas/tests/unit_test_for_968 
find : add unit tests
 2016-05-27 11:00:45 -05:00
Todd Gamblin
2f18a34458 Merge pull request #989 from LLNL/features/cflags-documentation 
updated documentation for cflags PR
 2016-05-27 10:59:40 -05:00
Gregory Becker
a2f90453f4 Fixed backwards compatibility for compilers.yaml config file 2016-05-26 20:30:05 -07:00
Mario Melara
9c1da4fa4c Corrected parantheses wrapping 2016-05-26 13:58:17 -07:00
Gregory Becker
189e8b3f34 fixed compiler config init logic 2016-05-26 13:17:01 -07:00
Gregory Becker
88bec814eb Allow 'arch=' syntax for specs to allow copying from output 2016-05-26 12:10:41 -07:00
Gregory Becker
c0661744cc fixed compatibility work 2016-05-26 11:38:40 -07:00
Gregory Becker
b968603a57 made yaml format backwards compatible 2016-05-26 11:14:05 -07:00
Mario Melara
3b675d8b70 Changed comparison operator so that we don't get caught in an infinite loop 2016-05-26 11:09:14 -07:00
Gregory Becker
c30fe932d9 fixed mock config to use truncated versions of linux distro versions 2016-05-25 16:34:45 -07:00
Gregory Becker
8f99334f11 Fixed test config to work on yosemite 2016-05-25 16:06:14 -07:00
Todd Gamblin
76d42b5200 Merge pull request #982 from trws/rust 
Rust
 2016-05-25 15:15:51 -05:00
Gregory Becker
0f40174723 added test platform 2016-05-25 12:28:59 -07:00
Gregory Becker
3a68dd2011 (hopefully) final fixes of the merge 2016-05-25 12:22:16 -07:00
Gregory Becker
74dc7ffe4d updated documentation for cflags PR 2016-05-25 10:56:12 -07:00
Peter Scheibel
dd26c0bbcc merge from develop 2016-05-24 18:56:44 -07:00
alalazo
84707ed926 modules : it's possible to add suffixes to module files based on constraint 2016-05-24 15:23:52 +02:00
Gregory Becker
513aae5ef8 fixed bug where earlier test was blowing away environment, causing an error on which('modulecmd') 2016-05-23 17:39:06 -07:00
Gregory Becker
1da6bbd146 Fixed a couple more bugs 2016-05-23 17:25:54 -07:00
Gregory Becker
d438ea0880 'Ugly merge because I mishandled git 
Merge branch 'save' into features/newarch
 2016-05-23 16:57:54 -07:00
Gregory Becker
d7612e7aaa Fixed errors caught by spec and concretize tests 2016-05-23 16:54:41 -07:00
Mario Melara
6c352132d0 Started writing documentation for architecture. Might need a couple more drafts 2016-05-23 14:28:00 -07:00
alalazo
0890ac4507 modules : explicit module file load from configuration files 2016-05-23 10:54:48 +02:00
Todd Gamblin
3ab56a188e Fixes #980: really slow spack spec performance 
- `spack spec dealii` now takse seconds rather than 18 minutes.

- Slow hash (`dag_hash`) was accidentally inserted into the fast hash
  (`__hash__`).

- Do not put the slow hash in the fast hash.
 2016-05-22 18:33:13 -07:00
Tom Scogland
9bd4bc02d6 fixing warning for package fetch 2016-05-22 11:16:00 -07:00
Todd Gamblin
d087086581 update documentation. 2016-05-21 14:33:05 -07:00
Mario Melara
c3767d593d compiler list is sorted in descending order, in order to get most up to date version we check from the beginning of the list 2016-05-20 15:48:13 -07:00
alalazo
7303c387e8 autopep8 : fixed style 2016-05-20 10:34:11 +02:00
alalazo
b485ca8198 find : added unit tests, exits with 1 if -E and -e are given 2016-05-20 10:32:46 +02:00
Mario Melara
175a042fd3 Changed rpaths method so that it only grabs rpaths using the compiler module name instead of PrgEnv-x module name 2016-05-19 16:42:13 -07:00
Mario Melara
36450b9bc9 Adding link_paths to craype compilers 2016-05-19 14:25:50 -07:00
Gregory Becker
19c8a52fe1 fixed spec syntax test 2016-05-19 09:53:49 -07:00
Brett Viren
126fc10b9d Remove view print for now. 2016-05-19 08:36:18 -06:00
Gregory Becker
63459ab0c7 Fixed some of the bugs 2016-05-18 18:21:52 -07:00
Gregory Becker
01d5ffcd87 Fixed the first set of merge bugs 2016-05-18 17:42:11 -07:00
Mario Melara
16431f7a4c Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-05-18 17:26:30 -07:00
Mario Melara
b25da51638 Changed unsatisfiable architecture test 2016-05-18 17:26:06 -07:00
Mario Melara
6926f4d0da Changed arch tests to new spec target= os= 2016-05-18 17:23:10 -07:00
Gregory Becker
5417f1cdc6 more merge work 2016-05-18 17:21:03 -07:00
Gregory Becker
b1e5eafb80 more merge work 2016-05-18 17:18:26 -07:00
Gregory Becker
deb5011d08 more merge work 2016-05-18 17:14:16 -07:00
Mario Melara
b4b7942230 Moved searching of flags into get compilers in compilers_for_spec 2016-05-18 17:07:23 -07:00
Mario Melara
9f8ff32bcc Got rid of ifdefs, changed parameters for Compiler: added kwargs 2016-05-18 17:05:11 -07:00
Mario Melara
faa0f2a13c got rid of ifdef 2016-05-18 17:01:59 -07:00
Gregory Becker
80310a3b7c Finished merge on these files 2016-05-18 16:50:50 -07:00
Gregory Becker
9f59c128be Partial merge of mainline develop 2016-05-18 15:13:40 -07:00
Tom Scogland
a1f8cc2817 peren-nesting fix in spec 2016-05-18 14:24:16 -07:00
Tom Scogland
29635b7bbd initial docs for find and flake8 cleanup 2016-05-18 14:04:39 -07:00
alalazo
23c7089789 fixes #967, flake8 approved 2016-05-18 11:52:27 +02:00
alalazo
fcc30cbf30 fixes #967 2016-05-18 11:48:03 +02:00
Todd Gamblin
502420ceff Merge branch 'features/cflags' into develop 
Conflicts:
	lib/spack/spack/cmd/find.py
	var/spack/repos/builtin/packages/ghostscript/package.py
 2016-05-17 16:44:54 -07:00
Todd Gamblin
9d584d0c47 Tag Spack version 0.9 
- Tagging a version to include all that's happened since 0.8.17

- This is in anticipation of merging `features/cflags` and
  `features/newarch`, which will break the spec format.

- 1.0 will likely come after those.
 2016-05-17 16:06:43 -07:00
Todd Gamblin
15e9d5f96e Merge pull request #868 from trws/explicitly-installed 
track whether a package was installed "explicitly"
 2016-05-17 14:28:17 -07:00
Todd Gamblin
138307dd0c Merge pull request #955 from trws/lua-rework 
complete lua rework
 2016-05-17 13:21:51 -07:00
Erik Schnetter
fcc4c1b2f2 Remove duplicate providers that can concretize to the same result 
Patch generously provided by @becker33.

Closes #928.
 2016-05-17 15:13:28 -04:00
Gregory Becker
0fd9cdb861 Fixed config tests for new compiler config format 2016-05-16 09:56:07 -07:00
Gregory Becker
7705603f73 Added more compilers to mock packages tests 2016-05-16 09:43:46 -07:00
Tom Scogland
8859a09cd2 handle explicit when requesting to install already installed packages 2016-05-16 08:08:40 -07:00
Tom Scogland
4acdfeae61 track whether a package was installed "explicitly" 
Adds a new attribute in the database to track whether a package was
installed explicitly or not, where explicitly is the user running `spack
install <package>` and implicitly is it being installed as a dependency.
It also adds arguments to `spack find` to find these packages such that
it should be possible to query the packages that were installed
implicitly and are not currently depended upon any longer.
 2016-05-16 08:08:40 -07:00
Brett Viren
1bbe6409e1 Merge remote-tracking branch 'upstream/develop' into view-fix-merge 2016-05-16 10:09:31 -04:00
Brett Viren
77a34ebdf9 flake8-clean. 2016-05-16 10:08:59 -04:00
Tom Scogland
dacedfcc0e formatting to appease flake8 2016-05-16 05:12:30 -07:00
Tom Scogland
c6524d0311 environment: fixed comment and default separator 2016-05-15 09:50:21 -07:00
Tom Scogland
577657b3f7 go rework 
This commit includes:
* a new go package that uses gccgo to bootstrap the go toolchain
* env support added to Executable
* a new Go fetch strategy that uses `go get` to fetch a package and all
  of its deps
* A platinum searcher package that leverages the new go package and
  fetch strategy
 2016-05-14 22:35:55 -07:00
Tom Scogland
a2197f3a41 yet more sacrifices to the god of short-lines 2016-05-14 17:51:58 -07:00
Tom Scogland
df30182a10 appeasing flake8 in environment 2016-05-14 17:39:59 -07:00
Tom Scogland
12e36ee0e7 fix merge error 2016-05-14 16:20:45 -07:00
Tom Scogland
b5979b13e3 complete lua rework, also module path fix 
This is a complete rework of the lua package, it also allows the
environment modification classes to handle paths that are not separated
by colons, and uses the support for same in TCL modules as well.

The biggest difference is the handling for lua extension packages, which
now have their paths set correctly by the lua parent package, and have
access to both lua and luarocks as installation tools. See the luaposix
package for what should be required for most lua packages after this.
 2016-05-14 16:18:26 -07:00
Elizabeth Fischer
efa506b235 Preparing spack setup command for merge. Try this out for a while... 2016-05-14 17:09:11 -04:00
Brett Viren
b3ede099e2 Document command. 2016-05-14 13:15:25 -04:00
Brett Viren
c98afe2205 Pick a better name for the 'spec' parameters. 2016-05-14 13:14:51 -04:00
Brett Viren
8ddc1f8977 Move from str.format() to string.Template. 2016-05-14 09:11:04 -04:00
Gregory L. Lee
e9b71872a8 addressed PR#946 comments from @adamjstewart 2016-05-13 15:16:07 -07:00
Mario Melara
fce6ecb05c Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers 2016-05-13 15:04:06 -07:00
Gregory Becker
f43cab0951 fixed pkgconfig issue 2016-05-13 14:39:20 -07:00
Gregory L. Lee
b8a91db089 Intel software packages and license enhancements 2016-05-12 20:04:45 -07:00
Gregory Becker
4c9dd028d2 Fixed error causing hang in env/cc 2016-05-12 17:20:48 -07:00
Todd Gamblin
5e13bba068 Fix #941: add copyright to new package files. 
- also reworded the boilerplate a bit.
 2016-05-12 10:30:13 -07:00
Denis Davydov
68c681bb78 document blas and lapack usage in packages 2016-05-12 08:59:17 +02:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Todd Gamblin
14fe0b8ad2 Merge pull request #558 from adamjstewart/features/pgi 
Add Licensed Software Support
 2016-05-11 17:17:47 -07:00
Gregory Becker
45bf93405a Changed spec syntax for new parts from modules feature 2016-05-11 16:23:13 -07:00
Gregory Becker
2e1810e3a7 re-merging develop 2016-05-11 15:26:09 -07:00
Gregory Becker
566fec4015 Fixed variants in new format and removed print statements from debugging 2016-05-11 14:56:41 -07:00
Gregory Becker
0b5836cfce Fixed flipped conditional in satisfies 2016-05-11 10:51:52 -07:00
Adam J. Stewart
c043275f1b Final flake8 changes 2016-05-11 11:46:41 -05:00
Todd Gamblin
9cf5404bb7 Merge pull request #937 from davydden/features/unit_tests 
Features/package_test
 2016-05-11 09:42:00 -07:00
Adam J. Stewart
5879f8207f Flake8 formatting changes 2016-05-11 11:32:08 -05:00
Adam J. Stewart
ee7ec4fa66 Move all licensing support to pre/post_install hooks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
19f4b27fd2 Add documentation for packaging of licensed software 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8bcb812529 Allow multiple license symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
2a11cb8b76 Use global licenses with local symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
6906911e85 Allow license files to use different symbols for comments 2016-05-11 11:32:08 -05:00
Adam J. Stewart
b63d11d5b0 Formatting consistency 2016-05-11 11:32:07 -05:00
Adam J. Stewart
5cb45c253e Bug fix 2016-05-11 11:32:07 -05:00
Adam J. Stewart
1b997f10a8 Add set_up_license function 2016-05-11 11:32:07 -05:00
Adam J. Stewart
8cba8d6d1d Add default global variables for licensing information 2016-05-11 11:29:30 -05:00
Todd Gamblin
fd5d89b61c Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config 2016-05-11 08:59:23 -07:00
alalazo
bb4b6c8ee2 flake 8 : fixed checks 2016-05-11 17:02:36 +02:00
Denis Davydov
eba264fcd0 fix formatting 2016-05-11 16:11:34 +02:00
alalazo
78ae5d7723 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 
Conflicts:
	lib/spack/spack/config.py
 2016-05-11 16:11:19 +02:00
alalazo
22bb0562fe Revert "flake8 : fixed all issues?" 
This reverts commit 71e49e289a.
 2016-05-11 16:09:47 +02:00
alalazo
b215b19cae modules : added docs 2016-05-11 15:42:48 +02:00
Denis Davydov
809ded74c9 add functions for simple unit tests; refactor openblas to use them 2016-05-11 15:10:13 +02:00
Benedikt Hegner
0b7b25487f improve error message for wrong config section names 2016-05-11 13:29:27 +02:00
Todd Gamblin
6d6eb0f2d1 Remove config.py from flake checking for now. 2016-05-11 02:32:13 -07:00
Todd Gamblin
fc8d18ebdc Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config 2016-05-11 02:31:20 -07:00
Todd Gamblin
9030541e4b Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages 
QA : make qa checking less painful
 2016-05-11 02:26:07 -07:00
Benedikt Hegner
c1e6b52184 first round of coding rules 2016-05-11 00:28:12 +02:00
Benedikt Hegner
05b6c3f8cf add test for list parameters 2016-05-11 00:14:24 +02:00
Benedikt Hegner
6e462abb4d hmm... test before commit 2016-05-10 23:31:29 +02:00
Benedikt Hegner
5d477bc956 fix setting config for list parameters 2016-05-10 23:19:30 +02:00
Todd Gamblin
98faee1d5c Minor tweaks to flock docs. 2016-05-10 11:19:17 -07:00
Todd Gamblin
a49662276d Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock 2016-05-10 11:10:07 -07:00
Luca Heltai
4cb91d6f7b Added documentation on lockf/flock. 2016-05-10 19:46:24 +02:00
alalazo
7d74e209f3 qa : this should still fail due to F821 2016-05-10 19:20:26 +02:00
alalazo
979b53cab6 qa : modifying 2 packages and a framework file just for the sake of it 2016-05-10 18:33:07 +02:00
alalazo
71e49e289a flake8 : fixed all issues? 2016-05-10 17:19:22 +02:00
alalazo
c3f3f26632 modules : added warning if a user tries to add prerequisite with dotkit 2016-05-10 16:16:50 +02:00
alalazo
0b7c673205 modules : changed syntax for environment modifications 2016-05-10 15:48:37 +02:00
alalazo
f8f71b1c2c modules : prefix_inspections moved to modules.yaml 2016-05-10 13:37:03 +02:00
alalazo
9eee71edf7 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-05-10 11:13:19 +02:00
Todd Gamblin
42edb6840e Merge pull request #905 from adamjstewart/features/rpath_flag 
Allow compilers to specify their own rpath linking flags
 2016-05-10 01:56:49 -07:00
Todd Gamblin
a2528a86b4 Merge pull request #692 from mathstuf/quoted-command-lines 
executable: quote arguments
 2016-05-10 01:42:26 -07:00
Todd Gamblin
8ce45d2161 Merge pull request #775 from epfl-scitas/fixes/config_update 
fix: proper update of config file
 2016-05-10 01:35:56 -07:00
Todd Gamblin
57e495943f Merge pull request #757 from glennpj/extend_r 
Make R extendable
 2016-05-10 01:30:13 -07:00
Todd Gamblin
69f6baf28e Merge pull request #842 from hegner/compiler_lookup_order 
Bugfix - preserve lookup order in PATH when invoking 'spack compiler add'
 2016-05-10 01:11:18 -07:00
Todd Gamblin
cbfba84aa2 Merge pull request #849 from brettviren/bugfix/share-pkgconfig 
Add  to sub dirs checked for pkg-config files.
 2016-05-10 00:59:01 -07:00
Gregory Becker
c6ac709d70 WIP fixing all the things that broke when I changed the anonymous spec names 2016-05-09 17:06:21 -07:00
Gregory Becker
a7026da45c cleanup 2016-05-09 16:24:26 -07:00
Gregory Becker
222c84d9be Changed anonymous specs to have name=None instead of empty string 2016-05-09 16:22:17 -07:00
Adam J. Stewart
6665a996e6 Add documentation for rpath_flag handling 2016-05-09 17:04:14 -05:00
Adam J. Stewart
58733eb26a Comment change 2016-05-09 16:59:39 -05:00
Adam J. Stewart
b211829fb1 Testing typo 2016-05-09 16:59:39 -05:00
Adam J. Stewart
4473311bdb Allow compilers to specify their own rpath linking flags 2016-05-09 16:59:39 -05:00
Denis Davydov
7a2d65967c wrap tty.die to 80 chars 2016-05-09 22:04:34 +02:00
Todd Gamblin
73107d6b0f cleanup 2016-05-09 03:40:34 -07:00
Todd Gamblin
0c853ac3ea Make _hash private to discourage access; fix dag_hash length handling. 2016-05-09 03:39:08 -07:00
Todd Gamblin
7151fd8836 Restore cc from mainline; clean up some cflags stuff. 2016-05-09 03:37:27 -07:00
Brett Viren
f1900f6a7b Add a 'print' view allowing genreation of arbitrary strings based on format using package/spec parameters. 2016-05-08 10:25:21 -04:00
Brett Viren
2d1430da13 Address all coments in @trws's latest comment in PR #869. 
I addressed them by factoring the code better to follow the visitor
pattern.  This will allow actions to be easily added in the future.
These may not even be file sytsem views.  One could add actions to
generate shell init scripts, JSON DAG-dumpers, GraphViz DOT file
generators, etc (yes, some of these are alread in there - just to give
the idea).

Also added is a top-level test

 $ source share/spack/setup-env.sh
 $ ./share/spack/examples/test_view.sh

Read the top of that script first.
 2016-05-07 18:24:24 -04:00
Gregory Becker
d392056457 Cleaning up print statements for debugging 2016-05-06 18:05:30 -07:00
Gregory Becker
1523ebe9f7 Working properly to display but not reuse old specs from yaml 2016-05-06 18:03:43 -07:00
Gregory Becker
06b9433351 Fixed previous commit 2016-05-06 12:35:43 -07:00
Gregory Becker
bc087cfefb Fixed database to account for hashes when reading install records 2016-05-06 12:28:46 -07:00
Gregory Becker
9f37e4c907 Made spec hashes immutable once concrete -- improved 2016-05-06 12:05:51 -07:00
Gregory Becker
addcde4f35 Made spec hashes immutable once concrete 2016-05-06 12:05:27 -07:00
Gregory Becker
2f821b9e9b temp 2016-05-05 18:13:56 -07:00
Gregory Becker
9a39ccea8f Every old spec has empty compiler flags 2016-05-05 17:49:30 -07:00
Gregory Becker
1bb7bfaf7f Versioning the database -- automatic reindex 2016-05-05 17:38:51 -07:00
Gregory Becker
3fc1344865 temp 2016-05-05 17:11:09 -07:00
Gregory Becker
11b62114bb versioning the database 2016-05-05 16:58:00 -07:00
Elizabeth Fischer
6a48385111 Keep users environment in the spack setup script (spconfig.py). This is important to avoid breaking things that require module loads to work; for example, non-activate Python packages. 2016-05-05 17:48:24 -04:00
Todd Gamblin
9fb1a9537d Merge branch 'develop' into features/cflags 2016-05-05 10:49:15 -07:00
Denis Davydov
c37ea9aff5 document usage of compiler flags properties 2016-05-05 11:56:58 +02:00
Denis Davydov
f84f04591b substitute cxx14_flag by a property with the same name to be overridden in derived classes 2016-05-05 10:48:31 +02:00
Denis Davydov
c6fb6bde40 remove cxx11_flag from Compiler as it is now substituted by a property with the same name 2016-05-05 10:47:02 +02:00
Denis Davydov
ddcb97f953 add a temporary Nag.cxx11_flag property 2016-05-05 10:44:41 +02:00
Denis Davydov
473a5542be compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class 2016-05-05 10:44:41 +02:00
Denis Davydov
30b65d3114 fix comment in Compiler class 2016-05-05 10:44:41 +02:00
Denis Davydov
e28ca3922f compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag 2016-05-05 10:44:41 +02:00
Denis Davydov
d5a760776a compiler: add default implementation of openmp_flag() and css11_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
6a418cfb8d compiler: simplify Clang.is_apple 2016-05-05 10:44:41 +02:00
Denis Davydov
f2f1c49c90 compilers: one more missing import statement 2016-05-05 10:44:41 +02:00
Denis Davydov
07fd0ccc9a compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version 2016-05-05 10:44:41 +02:00
Denis Davydov
592045cd54 compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version 2016-05-05 10:44:41 +02:00
Denis Davydov
3cd3052c56 compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
c078deaab1 compilers: add missing import statements 2016-05-05 10:44:41 +02:00
Denis Davydov
9776dc0433 compilers: add openmp_flag() method 2016-05-05 10:44:41 +02:00
Denis Davydov
2cdfe14e5a compilers: make sure cxx11_flag() is defined for all compilers 2016-05-05 10:44:41 +02:00
Todd Gamblin
13e52962ee Merge pull request #802 from gartung/std-cpp14 
Handle c++11 and c++14 correctly
 2016-05-05 01:41:55 -07:00
Gregory Becker
90b7b7ba5c Reworked compiler finding/storing/format to allow for multiple compilers with the same spec for different operating systems. TODO: fix config tests. All others up to date 2016-05-04 21:42:59 -07:00
Elizabeth F
2243de9e2f Make quiet mode default for spack spconfig 2016-05-04 23:39:27 -04:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Brett Viren
346f102234 Bug fixes, tty tweaks. 2016-05-01 17:13:44 -04:00
Brett Viren
8c140f4725 Change the action from parameter to subcommand to fit Spack convention. 2016-05-01 17:13:43 -04:00
Brett Viren
a2b9a000dc Add add removal and status actions in addition to link and add various ways to filter what is done. 2016-04-29 15:12:09 -04:00
Gregory Becker
4ba73dac34 Unit tests for cflags PR 2016-04-28 14:01:38 -07:00
Todd Gamblin
8cd13d4b35 Make arch command print out the platform. 2016-04-28 12:49:21 -07:00
Brett Viren
49956faab9 First try to make file system views of specs. 2016-04-28 14:54:14 -04:00
Gregory Becker
3b84345b77 Changed yaml format for node_dicts to mitigate future incompatibilities 2016-04-28 11:05:59 -07:00
Todd Gamblin
c35994d5bf Merge pull request #850 from mathstuf/partial-downloads 
fetch_strategy: download to temporary files
 2016-04-28 10:22:43 -07:00
Gregory Becker
ae5198e5e7 Merged in current develop to cflags 042716 2016-04-27 19:38:51 -07:00
Elizabeth F
4d466fe879 spack setup: Fix broken module convenience settings. 2016-04-27 20:57:04 -04:00
Todd Gamblin
8773a0b747 Merge pull request #847 from epfl-scitas/features/test_install_with_time 
test-install command : added elapsed time + xml is prettyprinted
 2016-04-27 17:32:21 -07:00
Ben Boeckel
e53571d2f0 fetch_strategy: download to temporary files 
This supports graceful recovery if spack is killed via a signal (e.g.,
SIGINT) while downloading a file.

Fixes #287.
 2016-04-27 14:49:27 -04:00
Brett Viren
b5ebd12fe2 Add to sub dirs checked for pkg-config files. 
This lets me build against the pure-include package Eigen.
 2016-04-27 13:45:05 -04:00
Massimiliano Culpo
b1ba869b37 test-install : fixed error in logic exposed by tests 2016-04-27 19:28:13 +02:00
Massimiliano Culpo
4846ab70d8 test-install : python 2.6 compatibility 2016-04-27 18:21:36 +02:00
Massimiliano Culpo
ec5bb88820 test-install : unit tests (hopefully) fixed for real 2016-04-27 18:06:41 +02:00
alalazo
42fab1591d test-install : fixed unit tests 2016-04-27 17:19:03 +02:00
alalazo
12dbd65f4c test-install : first draft that works 2016-04-27 13:56:32 +02:00
Benedikt Hegner
b7c064142e preserve lookup order in PATH when invoking 'spack compiler add' 2016-04-27 01:23:53 +02:00
Ben Boeckel
603467785b Compiler find docs (#831) 
* docs: mention `spack compiler find`

* docs: fix some weird wording.
 2016-04-26 10:00:54 -07:00
alalazo
99b52e6e71 test-install : wip to add other information 2016-04-26 16:41:33 +02:00
Ben Boeckel
ff9145f8a5 executable: quote arguments 
This allows command line arguments with spaces to be shown. The quoting
madness is because a single quote cannot appear within a single quoted
argument on the command line. To do so, you have to stop the single
quote argument, double quote the single quote, then open the single
quote again:

    $ echo 'before'"'"'after'
    before'after

Fixes #174
 2016-04-25 09:44:17 -04:00
Ben Boeckel
ed16bd133a compiler: add "find" subcommand (#818) 
And make "add" an alias to it.

Fixes #713.
 2016-04-23 13:34:51 -07:00
alalazo
67a01ef2ee tcl : extended conflict to be an array of strings 2016-04-22 10:50:24 +02:00
Todd Gamblin
fa02f94ca4 Regression test for not adding RPATHs with ld -r (#809, #821) 
- ld -r is only broken with rpaths on OSX; this tests that
  specific case.

- test should still work cross-platform.
 2016-04-21 23:12:33 -07:00
Denis Davydov
a0989ad672 minor cleanup of environment-modules documentation (#814) 
* minor cleanup of environment-modules documentation

* environment modules: update usage instructions
 2016-04-21 19:26:19 -07:00
Patrick Gartung
d5d1e89cbd remove use of unknown environment variable in lib/spack/env/cc (#821) 2016-04-21 19:15:54 -07:00
Adam Lyon
e92da6a6ba Handle c++11 and c++14 correctly 2016-04-19 16:52:08 -05:00
alalazo
5deaaa278c modules : added a few unit tests 2016-04-19 14:25:12 +02:00
alalazo
bce276d573 fix : missing autoload, failing validation 2016-04-18 17:51:53 +02:00
alalazo
50b148ca22 modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498 2016-04-18 13:22:50 +02:00
alalazo
18a241fe21 modules : added hook for module specific extensions 2016-04-18 13:22:31 +02:00
alalazo
c69acfa5c8 naming work correctly 2016-04-18 13:22:04 +02:00
alalazo
00f44d558a modules : started working on naming schemes and conflict 2016-04-18 13:21:41 +02:00
alalazo
1b4c4be151 modules : category is a single word (as I am not sure how dotkit will react to spaces) 2016-04-13 12:44:51 +02:00
alalazo
c422ce7c1d modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules 2016-04-13 11:26:22 +02:00
alalazo
fcd58a95dd Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-13 10:49:00 +02:00
alalazo
27280ea8be fix : added regression tests 2016-04-12 17:28:23 +02:00
alalazo
80678b2188 fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774 2016-04-12 16:54:51 +02:00
alalazo
41f365112c modules : added provenance comment in tcl header 2016-04-12 09:13:50 +02:00
alalazo
3959ca6270 modules : added possibility to blacklist or whitelist module files 2016-04-11 18:10:06 +02:00
alalazo
0e2b1359e3 modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies 2016-04-11 11:01:47 +02:00
Massimiliano Culpo
a5a5dbc408 tcl module file : added new-lines in autoload (per @glennpj bug report) 2016-04-10 13:21:41 +02:00
Mario Melara
3a281b2399 Commented out the add_x_from_string methods since we don't need to worry about it. Also, changed the way architecture is set. Todd wanted to have users be able to input just frontend and/or backend in the architecture spec. This will be able to parse those inputs. 2016-04-08 12:46:44 -07:00
Mario Melara
01a36ab333 Changed the logic of concretize. We don't have to worry about whether the part of the spec is a string since any string parsed is made into an object via the Arch constructor. Any dependencies will take the root arch spec as well 2016-04-08 12:44:27 -07:00
Mario Melara
5bcd1e7ccd If we already have the name and the platform, then we should probably go ahead and concretize it in the constructor. Else leave it as None and concretize it later. 2016-04-08 12:43:08 -07:00
Mario Melara
618b3f5f2d Changed default to default_target so the tests can pass 2016-04-08 11:18:30 -07:00
Mario Melara
277efc1dfb Added test that works on every type of combination the user could possibly enter for arch spec 2016-04-08 11:17:56 -07:00
Matthew LeGendre
1af88be371 Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list. 2016-04-08 11:06:14 -07:00
Mario Melara
0d1a1b7526 Changed _set_architecture so if user inputs only the target, then os is None. This prevents the os being referenced before assignment error 2016-04-08 10:29:37 -07:00
Mario Melara
6ff6c805af Assigned self.front_os, and back_os to self.default. Helps with testing. If we're on a darwin or linux machine, chances are there is no back end or front end operating system, but rather than have those as None, I just assign them the default which is detected via python platform. 2016-04-08 10:28:30 -07:00
Mario Melara
7b777568ed Added new concretization of architecture tests, test each combination of user input to make sure the correct os and target are chosen 2016-04-07 14:38:43 -07:00
Mario Melara
0ad317213c Changed architecture parser so that if user just enters in frontend or backend, then both the os and target will take those names. In the concretize method the frontend target/os and backend target/os will be picked to match each other 2016-04-07 14:38:04 -07:00
Mario Melara
07df403203 Cleaned up the concretize_architecture method by removing commented out code 2016-04-07 14:37:00 -07:00
Mario Melara
143a4d7f76 Changed default to default_target, also added frontend and backend to operating system 2016-04-07 14:36:26 -07:00
alalazo
1714f410f0 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-07 10:48:16 +02:00
alalazo
7dc1524c08 modules : added stub for dotkit (to be verified) 2016-04-07 10:48:05 +02:00
Glenn Johnson
b19d6ab9c5 Check for non-numeric bits in the stem. 2016-04-06 19:08:01 -05:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Mario Melara
99117cbc90 pulled from current repo the build_environment.py. Added module loading methods from our cray port 2016-04-06 14:07:22 -07:00
Mario Melara
918ad28a93 Changed all target values to architecture. Also added a sort_key method so that older architecture specs can be sorted with the newer ones 2016-04-06 13:58:29 -07:00
Massimiliano Culpo
4001663982 leftover from cherry-pick 2016-04-06 22:19:07 +02:00
alalazo
73b6214a13 module files : proper cleanup on uninstall fixes #216 
Conflicts:
	lib/spack/spack/test/database.py
 2016-04-06 22:10:04 +02:00
Mario Melara
749508af01 Found loops calling all_compilers that were always reading in the config file which lead to a slowdown, the fix is to cache the config file so we don't waste time re-reading the config file in again. 2016-04-06 12:05:29 -07:00
Mario Melara
3bf75fab3f Cleaned up architecture. Changed operating_system from dictionary method 2016-04-06 12:03:26 -07:00
alalazo
21b7734d92 modules : removed debug leftover 2016-04-06 17:08:31 +02:00
alalazo
7904f75782 modules : all the other strings are lower case 2016-04-06 17:05:47 +02:00
alalazo
e4cfe74887 modules : customization based on specs 2016-04-06 16:42:56 +02:00
alalazo
e993c17f89 modules : added environment modifications from configuration file 2016-04-06 14:02:27 +02:00
alalazo
d636b4fdde modules : more sensible name to blacklist environment variables 
modules : added skeleton to permit modifications based on specs
 2016-04-06 13:42:47 +02:00
Todd Gamblin
e104592e1f Merge pull request #738 from eschnett/eschnett/cleanup-cc 
Clean up cc script
 2016-04-05 10:50:45 -07:00
alalazo
670cb423f9 modules : iterating on all the dependencies doesn't reuire try/except KeyError 2016-04-05 18:44:40 +02:00
alalazo
5da37c573f modules : don't pass stream around 2016-04-05 18:41:38 +02:00
alalazo
2968b60ee0 module file : added autoload and prereq 2016-04-05 18:03:09 +02:00
alalazo
ca7d701007 module file : all the dependencies can affect the run_time environment, not only extendees 2016-04-05 16:10:04 +02:00
alalazo
c352249e30 EnvModules : narrowing the type of exceptions being "handled" 2016-04-05 14:55:05 +02:00
Erik Schnetter
4ce03b75bc Correct typo 2016-04-05 07:42:23 -04:00
alalazo
d546d828d3 module file : added filtering based on environment variable name 2016-04-05 13:20:28 +02:00
Mario Melara
9bfc83ac5c Changed so that py_platform.dist() grabs the major version number. 2016-04-04 15:36:10 -07:00
Todd Gamblin
0296f96c7b Resolves #739. Don't call setup_dependent_* for package itself. 2016-04-04 13:56:15 -07:00
Mario Melara
6d73c86209 Gives error on cori that [PrgEnv-xx, gcc/x.x.x] is not part of the schema. Changed it to oneOf : type : array to get rid of the error. 2016-04-04 13:45:15 -07:00
Mario Melara
9c071ea40d Changed modulecmd parameters. return_oe is not one of the parameters in the mainline spack repo. Changed the args to the appropriate ones in the new spack 2016-04-04 13:44:24 -07:00
Erik Schnetter
0ff059e388 Clean up comments and output messages 2016-04-04 16:00:09 -04:00
Erik Schnetter
83d6e04d39 Convert = to == in tests; untabify 2016-04-04 15:38:21 -04:00
Erik Schnetter
7bc28cc334 Clean up cc script 2016-04-04 14:33:48 -04:00
Todd Gamblin
5084130e71 Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules 
Added Environment Modules
 2016-04-04 10:41:54 -07:00
Todd Gamblin
c7b11360e9 Merge pull request #732 from citibeth/efischer/160403-ConditionalExtendsBugfix 
[Needs Review] Fix conditional extends (BUG #683)
 2016-04-04 10:21:26 -07:00
Todd Gamblin
a6c1cfe037 Merge pull request #670 from epfl-scitas/uninstall_improved 
enhancement : recursive uninstallation of dependent packages
 2016-04-04 10:04:14 -07:00
Todd Gamblin
bb968fc5a2 Fix #620, Resolve #664. Fix issues with build environment. 
- Also added better regression tests for build environment.
 2016-04-04 02:52:38 -07:00
alalazo
f40b0f52e0 uninstall : updated documentation and error messages 2016-04-04 10:59:01 +02:00
alalazo
401dcb3635 uninstall : renamed --recursive to --dependents 2016-04-04 10:28:47 +02:00
Elizabeth F
2f4d8a634d Fix conditional extends (BUG #683) 2016-04-03 21:41:46 -04:00
citibeth
281835887a Added documentation for recursive modules 2016-04-01 22:54:49 -04:00
Elizabeth F
c6d8208150 Added recursive module loading 2016-04-01 22:54:42 -04:00
citibeth
459aab628d Added documentation for installing Environment Modules with Spack. 2016-04-01 16:00:58 -04:00
Peter Scheibel
9eb314fcaa merge from develop 2016-03-31 12:56:34 -07:00
Todd Gamblin
220c72d67f Merge branch 'features/blas-lapack-hardening' into develop 2016-03-31 11:37:09 -07:00
Todd Gamblin
a670408617 Quick fix for pkg diff. 2016-03-31 11:34:27 -07:00
Tom Scogland
5d2151ed64 reworked to deal with stage.path as property 
This version actually pulls the path through the package to deliver it
to each stage on creation when passed through the command.  This is
necessary due to the new StageComposite class that makes setting the
path directly on the stage impractical, it also takes the logic out of
package for the most part, which seems like an improvement.
 2016-03-31 10:20:55 -07:00
Tom Scogland
63f824b218 add a path argument to the stage command 
Allow users to use spack to stage a, potentially complex, package into a
given path.  This is nice for packages with multiple resources that must
be placed, for example LLVM with all sub-projects.
 2016-03-31 09:56:26 -07:00
Massimiliano Culpo
4f6320a7eb uninstall : added unit tests 2016-03-31 13:22:48 +02:00
Massimiliano Culpo
dd1c667d8d uninstall : changed error message 2016-03-30 16:10:20 +02:00
Peter Scheibel
a0c42a3fd1 removed stale TODO 2016-03-29 18:58:18 -07:00
Peter Scheibel
c40559433b added docstring 2016-03-29 18:54:24 -07:00
Peter Scheibel
03d907e1e5 in the case of multiple digests, avoid creating different mirror filenames from run to run (as long as the available digests do not change) 2016-03-29 18:48:25 -07:00
Peter Scheibel
ce4de6227e (1) access package via spec property (2) use any digest to form archive filename 2016-03-29 18:45:58 -07:00
Peter Scheibel
bee224c567 mirror archive filename now includes the digest type as well as the digest 2016-03-29 18:25:22 -07:00
Gregory Becker
7e9baf9e25 Made architecture test robust for more architectures 2016-03-29 11:23:36 -07:00
Massimiliano Culpo
653d7c5257 uninstall : minor fixes 2016-03-29 17:28:46 +02:00
Todd Gamblin
a05bea7de5 Merge pull request #681 from LLNL/bugfix/complete-restage 
Fix bug in restage
 2016-03-29 05:11:21 -07:00
Todd Gamblin
dfc5cf288c Fix bug in restage 
- Restage previously only removed the source directory from the stage.
- Now removes any other directories in stage as well.
 2016-03-29 04:35:41 -07:00
Todd Gamblin
e1fdd4341b Merge branch 'eschnett-correct-cc' into develop 2016-03-29 04:16:18 -07:00
Todd Gamblin
f80e839ff4 Handle Darwin's ld -r option properly 
- ld -r doesn't work with RPATH on OS X.

- for GNU ld, the -r option only means 'relocatable',
  and doesn't affect RPATH.

- This adds special handling to omit RPATHs for ld -r on OS X
 2016-03-29 03:14:39 -07:00
Todd Gamblin
a14527ec06 Add command to compiler input log. 2016-03-28 15:34:25 -07:00
Massimiliano Culpo
1141f11955 uninstall : added user confirmation 2016-03-29 00:28:02 +02:00
Todd Gamblin
d8579a5b80 Simplify cc: Remove old logic and add better tests. 
- removed a lot of old logic that was only still needed for tests.

- Added better unit tests for dependency RPATH, -L, and -I args

- tests now check whether the compiler omits -I args in link mode.
 2016-03-28 04:11:54 -07:00
Todd Gamblin
f3dd889d44 Fix bug with lib64 RPATH setting in cc. 2016-03-28 03:51:05 -07:00
Todd Gamblin
eb397b5693 Merge pull request #669 from glennpj/module_format 
Wrap the long description of an environment module so it is more readable
 2016-03-27 17:30:07 -07:00
Todd Gamblin
8b45d6f84f Merge pull request #658 from davydden/metis_parmetis_darwin 
metis/parmetis/oce/boost: correct install_name on Darwin via a global tool
 2016-03-27 16:10:05 -07:00
Denis Davydov
7eca1284c8 metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function. 2016-03-28 00:22:25 +02:00
Massimiliano Culpo
e0f463c4f9 uninstall : added recursive option 2016-03-27 23:56:41 +02:00
Glenn Johnson
5695e4c03d Wrap the long description of an environment module so it is more readable. 2016-03-27 15:42:20 -05:00
Todd Gamblin
ec107b290f Merge branch 'correct-cc' of git://github.com/eschnett/spack into eschnett-correct-cc 2016-03-27 13:38:06 -07:00
Todd Gamblin
e049fc2840 Run post-install hoooks before build stage is removed. 
- Build will properly fail when post-install hoooks fail.

- Post-install hooks have a proper working directory set now.
 2016-03-27 11:47:20 -07:00
Todd Gamblin
cde3320582 Add a method to find the containing directory of a library. 2016-03-27 11:32:42 -07:00
Todd Gamblin
dce590fb21 Add a dso_suffix variable to build_environment 
- Consolidate this in one place so that we don't have to do it in every build.

- Will update further once better OS support is committed.  Shoudl
  really be an attribute of the forthcoming `Platform` class.
 2016-03-27 11:32:42 -07:00
Todd Gamblin
b0b882cbb3 Speed up directives by skipping debug info in stack traversal. 
- `caller_locals()` doesn't need debug info, only frame locals.
- `get_calling_module()` doesn't either.

- Changed calls to `inspect.stack()` -> `inspect.stack(0)`
 2016-03-27 11:30:09 -07:00
citibeth
4a6b5d5247 Update to documentation formatting. 2016-03-27 00:14:10 -04:00
citibeth
a1c965d70d Fixed imports to make `git spconfig` work after recent merge from develop. 2016-03-26 20:40:22 -04:00
Peter Scheibel
06c98320a8 handle case where file contents change but resource name does not (e.g. if resource maintainer uses same name for each new version of a package) 2016-03-25 18:38:26 -07:00
Gregory Becker
57ced37229 Fixed a bug in the testing 2016-03-25 17:03:49 -07:00
Gregory Becker
618a9b2d7b Fixed bug in platform names that I introduced yesterday 2016-03-25 15:41:22 -07:00
Elizabeth F
9889b1a5fe Added documentation for StagedPackage, etc. 2016-03-25 17:15:15 -04:00
Elizabeth F
8f675b0ee8 Made StagedPackage user-visible. 2016-03-25 17:15:06 -04:00
citibeth
358b387283 Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage 2016-03-25 17:14:35 -04:00
citibeth
8019748396 Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage 
# Conflicts:
#	lib/spack/spack/package.py
 2016-03-25 15:36:54 -04:00
Peter Scheibel
bd5abb2922 spacing issue 2016-03-24 19:48:15 -07:00
Peter Scheibel
6423eab917 implemented cache_local method for DIY stage (as a noop) 2016-03-24 19:45:10 -07:00
Peter Scheibel
142d1f5cbc stage creates cache fetcher with cache object (so it can be mocked for tests) 2016-03-24 19:28:21 -07:00
Gregory Becker
315623d361 Fixed things from merge. 2016-03-24 16:55:46 -07:00
Adam J. Stewart
9985816642 Fix spack info indentation 2016-03-24 14:49:41 -05:00
Peter Scheibel
fe71ba992d remove unused import 2016-03-24 12:16:50 -07:00
Peter Scheibel
13bf7d4ff1 (1) move definition of MockCache to test command (no definitions or extra work is required in MockPackagesTest) (2) removing outdated logic (which originated in this branch) and minor cleanup 2016-03-24 12:02:39 -07:00
alalazo
758a9c9096 python extensions : create PYTHONPATH in module files 2016-03-24 10:57:46 +01:00
alalazo
f095e619b9 module files configuration : enable/disable logic is now positive 2016-03-24 09:31:28 +01:00
Peter Scheibel
dbfa6c925e replace references to cache directory with references to new cache object. tests may assign a mock cache but by default it is None (this will avoid any implicit caching behavior confusing unit tests) 2016-03-23 20:18:58 -07:00
Peter Scheibel
ed0f6f75a7 clear test cache before and after each MockPackagesTest (I think Ive got a better way to avoid test fragility but Ill add this for now) 2016-03-23 19:49:28 -07:00
Gregory Becker
688eca23ff cleanup 2016-03-23 09:54:57 -07:00
alalazo
d93f2b335d modules : fixed annoying indent 2016-03-23 16:04:36 +01:00
alalazo
0fbdb3f65d modules : added configuration file with disable keyword 2016-03-23 15:54:26 +01:00
Todd Gamblin
38350ae33d resurrect preferred=True option for packages lost in merge of externals support. 
- Pyton 2.7.11 is preferred again.
 2016-03-23 01:32:54 -07:00
Todd Gamblin
c4134ee71e Fix #608: broken numpy build. 
- Failed to catch all instances of modify_module when it was renamed
  to setup_dependent_package.

- Refactored remaining modify_module calls.

- Also modified Python's setup_dependent_package slightly: only
  creates empty site-packages directory for Python extensions now, not
  for all dependents.
 2016-03-23 00:36:32 -07:00
Peter Scheibel
cb9fba98d8 (1) relocate cache for tests (2) initial approach for restoring unit tests (just for git tests although the same concept applies to the other unit tests which are failing - namely those for svn and hg) 2016-03-22 19:37:47 -07:00
Gregory Becker
7c729d4c3c Merged newarch into merge 2016-03-22 15:22:51 -07:00
Peter Scheibel
75460d8586 URLFetchStrategy.archive does a copy vs. a move now 2016-03-22 10:43:43 -07:00
Todd Gamblin
a26992ef55 Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package 
- Fixed in package.py
- Fixed wrong prototypes in packages that use it.
- Fixed build_environment to set module variables properly
  - added hacky fix to ensure spec/package consistency in build processes.
  - Need to think about defensive spec copy done by `Repo.get`.  May be
    time to think about an immutable spec implementation.
 2016-03-22 01:56:16 -07:00
Peter Scheibel
41a97c8f80 temporarily wrap archiving with conditional to avoid moving (this still causes a failure on the initial download) 2016-03-21 20:55:23 -07:00
Peter Scheibel
b255f02762 undoing whitespace-only diff 2016-03-21 20:50:26 -07:00
Peter Scheibel
ee5e507ff6 pursuing a strategy using fetch.archive and treating var/spack/cache as a mirror. this should support both URLFetchStrategy as well as VCSFetchStrategy (the previous strategy supported only the former). this won't work until URLFetchStrategy.archive is updated 2016-03-21 20:48:12 -07:00
Todd Gamblin
b1516f64eb Rename some environment methods to be less repetitive, add set_path. 2016-03-21 16:01:40 -07:00
Todd Gamblin
439d47b4e4 Refactor environment setup. 
- Gave setup_environment and setup_dependent_environment more similar
  signatures. They now allows editing the Spack env and the runtime
  env for *this* package and dependents, respectively.

- modify_module renamed to setup_dependent_python_module for symmetry
  with setup_dependent_environment and to avoid confusion with
  environment modules.

- removed need for patching Package objects at runtime.

- adjust packages to reflect these changes.
 2016-03-21 16:01:35 -07:00
Todd Gamblin
e88df95b42 Remove unused code from modules.py 2016-03-21 16:01:26 -07:00
Todd Gamblin
48b35bb495 Fix print function in uninstall.py 2016-03-21 16:00:50 -07:00
Todd Gamblin
861a235ecb Merge pull request #552 from epfl-scitas/features/env_objects_flying_around 
enhancement proposal : customization of module files
 2016-03-21 15:56:20 -07:00
Matthew LeGendre
5d06daeb5e Add test for issue 573, child with compiler not respected in concretization 2016-03-21 14:28:34 -07:00
Matthew LeGendre
b79fce76cb Fix issue 573 where Spack was ignoring user's compiler preference in concretization 2016-03-21 14:28:07 -07:00
alalazo
fbeffee91e Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 
Conflicts:
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/netlib-scalapack/package.py
 2016-03-21 09:46:49 +01:00
alalazo
aef6d50b08 uninstall : fixed typo (print statement vs. print function) 2016-03-21 09:23:25 +01:00
Peter Scheibel
d632266a40 move cache to var/spack/cache 2016-03-18 17:15:45 -07:00
Peter Scheibel
fd067dd8b8 since only archives with checksums can be retrieved from the cache, make sure that an archive without a checksum isnt placed there (this wouldn't cause an error but does waste space and might be confusing) 2016-03-18 17:00:13 -07:00
Peter Scheibel
ac7323118e rename for clarity 2016-03-18 16:34:45 -07:00
Peter Scheibel
16fa40b893 (1) add a var/cache directory under spack. (2) downloads from URLFetchStrategy check the cache and skip the download if the source is available there. 2016-03-18 15:50:24 -07:00
Todd Gamblin
e9126baaab Add docs for InstallError. 2016-03-18 13:42:45 -07:00
Todd Gamblin
23f3f1adfe Make InstallError and ExternalPackageError visiible in packages. 2016-03-18 13:32:37 -07:00
Todd Gamblin
741bea032c Merge pull request #574 from LLNL/features/flattener 
Created flatten_dependencies function
 2016-03-18 12:13:48 -07:00
Gregory Becker
151b04637e changed function name and removed hardcoded libs dir 2016-03-18 11:55:31 -07:00
Gregory Becker
af7e3cadde cleanup 2016-03-18 11:34:07 -07:00
Gregory Becker
76672a4e34 Refactoring flat_install 2016-03-18 11:28:44 -07:00
Todd Gamblin
4e9ba49272 Merge pull request #576 from adamjstewart/features/tar 
Add support for .tar files
 2016-03-18 11:13:17 -07:00
Adam J. Stewart
6acb830263 Add support for .tar files 2016-03-18 13:03:55 -05:00
Gregory Becker
80495e50f9 added error class for error that should never come up 2016-03-18 09:46:18 -07:00
Gregory Becker
1fa38689d8 Created flatten_dependencies function that dummy packages can use to create sane install environments. 2016-03-18 09:35:56 -07:00
alalazo
491babd5cd env modifications : added a validation rule 2016-03-18 17:09:20 +01:00
alalazo
1e468c5541 modules : added formats mapping 2016-03-18 16:02:44 +01:00
alalazo
ccd90df62f modules : turned category into a property (logic can be extended later) 2016-03-18 15:41:14 +01:00
alalazo
67ca2c704b modules : fixed bug in modify_module arguments 2016-03-18 15:18:26 +01:00
alalazo
ec8cc2b528 PYTHONPATH : python patches methods for its extensions 2016-03-18 14:40:53 +01:00
Ben Morgan
076cc764a7 Add additional suffixes for GCC compiler 2016-03-18 11:26:22 +00:00
alalazo
f9438c75d0 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-18 10:26:34 +01:00
Erik Schnetter
f3ea0420f8 Import recent changes 2016-03-17 21:53:13 -04:00
Erik Schnetter
84b7cd593f Merge branch 'develop' into correct-cc 
# Conflicts:
#	lib/spack/env/cc
 2016-03-17 21:52:24 -04:00
Todd Gamblin
90268876f7 Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554 
- Add documentation as well.
 2016-03-17 18:49:58 -07:00
alalazo
ac394718ec python : implemented possible solution 2016-03-17 18:22:07 +01:00
alalazo
e673127263 package : added documentation 2016-03-17 18:11:23 +01:00
alalazo
38c3c84969 environment : added caller information 2016-03-17 17:37:33 +01:00
alalazo
3da4d6664b environment : simplified hierarchy according to comments in review 2016-03-17 15:38:08 +01:00
alalazo
f0f0663d1b package : split environment_modifications into setup_environment and setup_dependent_environment. 
package : renamed `module_modifications` to `modify_module` for consistency
 2016-03-17 15:11:39 +01:00
alalazo
9cdd79e33f modules : restored previous logic for path inspection 2016-03-17 14:14:18 +01:00
Adam J. Stewart
bb04d5cc63 Fix grammar in mirrors documentation 2016-03-16 14:27:22 -05:00
alalazo
ac762e95a6 modules : removed dead code 2016-03-16 16:23:02 +01:00
alalazo
597727f8be tclmodules : added hooks to process EnvironmentModifications objects 2016-03-16 15:19:13 +01:00
alalazo
b45ec3f04e environment : simplified modification of the environment 2016-03-16 10:55:28 +01:00
alalazo
b2c98feea4 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-16 09:02:35 +01:00
Todd Gamblin
7eca383b10 Add sanity check paths to packages; fix #505 2016-03-15 17:16:04 -07:00
Matthew LeGendre
108ea1522a Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize 
Bugfix/gh538 less greedy concretize
 2016-03-15 16:18:54 -07:00
Todd Gamblin
15bbd088e6 Fix #551: version bug in spack create 
- `spack create` now sets a proper version in generated file, based on
  the filename, even if it can't find any tarballs for the package.
 2016-03-15 14:38:06 -07:00
alalazo
c8cc6f4fc1 test : fix for python 2.6 2016-03-15 16:59:29 +01:00
alalazo
ccced9f290 package : optimized imports 2016-03-15 15:12:39 +01:00
alalazo
cc3d9f4eb7 environment : added test, modified docs 2016-03-15 15:09:35 +01:00
alalazo
572cb93bf8 package : renamed setup_dependent_environment to module_modifications 2016-03-15 14:05:30 +01:00
alalazo
c85888eb57 package : added environment_modifications 2016-03-15 13:36:41 +01:00
alalazo
bcea1df01c environment : refactoreded set_build_environment_variables 2016-03-15 10:49:33 +01:00
alalazo
f20247ae55 environment : refactoreded set_compiler_environment_variables 2016-03-15 10:08:54 +01:00
alalazo
f9923452b3 environment : added machinery to collect modifications to the environment and apply them later 2016-03-14 14:35:48 +01:00
Todd Gamblin
f2761270f3 Make concretization less greedy: add backtracking for virtuals. 
- `_expand_virtual_packages` now gets a candidate list and will try
  all the candidates.

  - Good news: If the first virtual in the list conflicts with something else in
               the spec, we'll keep trying until we find a good one.

  - Bad news: Only looks as far as the next normalize(); can't see
              conflicts further ahead than that if they're inevitable
              some other virtual expansion.

- Refactor `concretize.py` to keep all the nasty spec graph stitching in
  `spec.py`. This is more similar to before externals support.

  - `concretize.py` now just returns a list of candidates sorted by
    ABI compatibility to `_expand_virtual_packages`, and `spec.py`
    handles testing the candidates.

- Refactor the way external paths are handled in `config.py` and `concretize.py`:

  - previously, `spec_externals` returned spec/path pairs.  Now it
    returns specs with `external` set. Makes code in `concretize.py`
    more natural.
 2016-03-14 05:04:01 -07:00
Todd Gamblin
f45b8b1083 Add some tests for packages with multiple virtual dependencies. 
- Added mock `hypre` package, depends on `lapack` and `blas`.

- test cases where some packages provide both `lapack` and `blas`, but
  others do not.
 2016-03-14 05:02:50 -07:00
Todd Gamblin
05c761dee9 Add package_class method to spec. 
- Shouldn't call .package from within things like normalize() and
  concretize() beacuse spec may be inconsistent.

- Add `.package_class` property so that we can get at package metadata
  without constructing a Package with a Spec.

- should be faster than `.package` was, anyway. Use where possible.
 2016-03-14 04:59:29 -07:00
Todd Gamblin
003fd4d834 Optimize __eq__ and __ne__ in key_ordering 
- use `is` when possible before calling `_cmp_key()`
 2016-03-14 04:55:30 -07:00
Elizabeth F
5c865b9b70 Fixed typo in typo fix. 2016-03-13 19:44:04 -04:00
Elizabeth F
6f26c45143 Fixed typo bug. Made error comment more explicit 2016-03-13 19:41:09 -04:00
Elizabeth F
3383486adc Fixed typo bug. Made error comment more explicit 2016-03-13 19:39:45 -04:00
Elizabeth F
0426796d9f Fixed typo 2016-03-13 18:14:38 -04:00
Elizabeth F
030e8dd1ac Removed Python 2.7-style string formatting 2016-03-13 18:04:23 -04:00
Elizabeth F
4c9a52044a Fixed CMakePackage import 2016-03-13 15:18:24 -04:00
citibeth
857f791286 Add missing import. 2016-03-13 00:40:50 -05:00
citibeth
9885f1a19e Fix for Python 2.6 2016-03-13 00:34:46 -05:00
Elizabeth F
c1a8574d8f Fixed for Python 2.6 2016-03-13 00:29:40 -05:00
citibeth
4236157823 (1) Added "spack spconfig" command. 
(2) Neatened up the spconfig.py auto-generated file.
 2016-03-13 00:13:00 -05:00
Elizabeth F
90bb855ffa A new subclass StagedPackage(Package) is introduced. This PR should 
not change the behavior for existing packages that subclass from
spack.Package.

If a package subclasses spack.StagedPackage instead of spack.Package,
the install() phase (run inside a forked process) is now separated
into sub-stages:

    a) spconfig: Generate a script spconfig.py that will configure the
       package (eg by running CMake or ./configure) This is for use if
       the user wishes to build externally from Spack.  Therefore, the
       Spack compiler wrappers are NOT used here.  Currently, that
       means that RPATH support is up to the user.

    b) configure: Configure the project (eg: runs configure, CMake,
       etc).  This will configure it for use within Spack, using the
       Spack wrapper.

    c) build: eg: "make"

    d) install: eg: "install"

If one chooses to use StagedPackage instead of Package, then one must
implement each of the install sub-stages as a separate method.
StagedPackage.install() then calls each of the sub-stages as
appropriate.

StagedPackage can be configured to only run certain sub-stages.  This
is done by setting the optional kwarg install_phases when calling
do_install().  Setting install_phases() ONLY has an effect on
StagedPackage, not on any existing packages.  By default,
install_phases is set to make StagedPackage run the same stages that
are normally run for any package: configure, build, install (and NOT
spconfig).

The ability for Spack to run stages selectively for StagedPackage
instances will enable new functionality.  For example, explicit
CMake/Autotools helpers that allow Spack to help configure a user's
project without fetching, building or installing it.

-------------

One implementation of StagedPackage is provided, CMakePackage.  This
has the following advantage for CMake-based projects over using the
standard Package class:

  a) By separating out the phases, it enables future new functionality
     for packages that use it.

  b) It provides an implementation of intall_spconfig(), which will
     help users configure their CMake-based projects.

CMakePackage expects users to implement configure_args() and
configure_env().  These methods provide the package-specific arguments
and environment needed to properly configure the package.  They are
placed in separated functions because they are used in both the
spconfig and configure stages.

TODO:

1. Generate spconfig.py scripts that are more readable.  This allows
   the users to understand how their project is configured.

2. Provide a practical way for the user to ACCESS the spconfig stage
   without building the project through Spack.

3. The CMAKE_TRANSITIVE_INCLUDE_PATH stuff needs to be reworked; it
   should be considered provisional for now.

4. User of Autotools might wish to make a similar ConfigurePackage
   subclass of StagedPackage.

---------------

One package using CMakePackage is introduced.  See ibmisc/package.py.
 2016-03-11 23:30:38 -05:00
becker33
3060f27909 Merge pull request #536 from adamjstewart/fixes/doc_typos 
Documentation typo fixes
 2016-03-11 10:53:57 -08:00
Adam J. Stewart
bae03404f4 Documentation typo fixes 2016-03-11 12:51:45 -06:00
Matthew LeGendre
1c7f754e5b Invert and rename the nobuild option in package.yaml configs to buildable. 2016-03-11 10:04:08 -08:00
alalazo
1d70b590fc build_environment : fixed minor spelling errors and a few style issues 2016-03-11 13:20:57 +01:00
Todd Gamblin
f40c78a064 Merge pull request #532 from mplegendre/bugfix/ordering_satisfies 
Fix issue with preferred satisfies not being respected
 2016-03-10 21:50:40 -08:00
Matthew LeGendre
ac88cab68f Fix issue with preferred satisfies not being respected 2016-03-10 17:00:27 -08:00
Todd Gamblin
30df1c838d Merge pull request #531 from mplegendre/bugfix/github-530 
Fix type error that was causing mis-ordering of compiler versions
 2016-03-10 16:31:52 -08:00
Matthew LeGendre
4693af0736 Fix type error that was causing mis-ordering of compiler versions 2016-03-10 16:23:35 -08:00
Todd Gamblin
2bbf42b49d Indentation change. 2016-03-10 16:18:11 -08:00
Todd Gamblin
670024cf77 Merge branch 'mplegendre-features/external-packages' into develop 2016-03-10 10:07:08 -08:00
alalazo
30adc4c9b8 cc : handle spaces in folders? 2016-03-10 14:59:31 +01:00
alalazo
78ef0618bc cc : converted indents to spaces 2016-03-10 14:35:09 +01:00
Massimiliano Culpo
7ae6c62ddb Fixed shell quoting error 2016-03-10 14:08:43 +01:00
Massimiliano Culpo
835b47c196 Merge branch 'develop' of https://github.com/LLNL/spack into fixes/intel_openmpi 2016-03-10 13:18:03 +01:00
Todd Gamblin
c4fddcc6e9 Add 'provders' back into packages.yaml schema 2016-03-10 03:15:49 -08:00
Todd Gamblin
b637f75164 Merge branch 'mplegendre-features/external-packages' into develop 2016-03-10 02:04:44 -08:00
Todd Gamblin
82b7067fdf Refactored external packages slightly. 
- Move `Spec.__cmp__` out of spec, into concretize as `cmp_specs`.
  - `Spec.__cmp__` was never called (except explicitly) due to rich
    comparison operators from `key_ordering`

- Refactor `_find_other_spec` to free function `find_spec`. Add a test
  for it to make sure it works.
 2016-03-10 01:29:55 -08:00
Todd Gamblin
1fe196f95c whitespace and formatting 2016-03-10 01:29:55 -08:00
Todd Gamblin
048c406f49 Remove vestigial variants in directory name. 2016-03-10 01:29:54 -08:00
Todd Gamblin
b0572a5462 Minor tweaks to abi code. 2016-03-10 01:29:54 -08:00
Todd Gamblin
0244d794cd remove unnecessary import 2016-03-10 01:29:54 -08:00
Todd Gamblin
b0377da771 update mirror config documentation. 
- mirrors.yaml uses Spack's OrderedDict rather than lists.
 2016-03-10 01:29:53 -08:00
Todd Gamblin
52cdcdde76 Fix #525: sbang handles symlinks & directories properly. 2016-03-09 17:15:10 -08:00
Todd Gamblin
f56939c16c Add unit test for sbang patching. 2016-03-09 17:13:41 -08:00
Matthew LeGendre
dd0ae255ad Merge branch 'features/external-packages' of github.com:mplegendre/spack into features/external-packages 
Conflicts:
	lib/spack/docs/site_configuration.rst
 2016-03-09 16:18:37 -08:00
Matthew LeGendre
1f06dd40f7 Update documentation for new packages.yaml config format. 2016-03-09 16:11:53 -08:00
Matthew LeGendre
a384ad5b12 Fix problem with pure integer arguments in preferred versions list (e.g, 2 instead of 2.7.3) 2016-03-09 16:11:33 -08:00
Todd Gamblin
ca10229565 Fixes #524 
- Had attempted to add more functionality by assigning different
  meanign None, True, and False values "keep_stage" (where False was
  "always delete").

- Turns out that's not really worth the complexity.  Having the third
  "always delete" sense is hardly ever useful but makes the code hard
  to understand.
 2016-03-09 14:56:21 -08:00
Matthew LeGendre
87db69478d Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/package.py
 2016-03-09 11:09:37 -08:00
Luigi Calori
bf4d51ea0b fix error exit when doing spack patch without parameters, same as spack stage 2016-03-09 09:27:53 -08:00
Todd Gamblin
9c61843737 Fix bugs in DIYStage: fetch & context handling. 
- DIYStage needs to be a context handler
- DIYStage.fetch needs to take 2 args.
 2016-03-08 13:58:41 -08:00
Todd Gamblin
df84677d16 Make diy generate verbose build output by default. 
- added -q option to shut it up
 2016-03-08 13:57:13 -08:00
Todd Gamblin
a1be45d0e7 Fix bug with setting module-scope vars in derived package classes. 2016-03-08 13:56:44 -08:00
Todd Gamblin
a4861a3072 Minor changes/bugfixes on md5/checksum PR 2016-03-08 10:39:46 -08:00
Todd Gamblin
747855b960 Merge branch 'fixes/md5' of git://github.com/epfl-scitas/spack into epfl-scitas-fixes/md5 2016-03-08 09:12:57 -08:00
Todd Gamblin
31cebb969a Merge pull request #504 from LLNL/bugfix/github-502 
Bugfix/GitHub 502: Error: No spec file found at path
 2016-03-08 03:43:52 -08:00
Todd Gamblin
214deeda54 Merge branch 'features/noexpand' into develop 
Conflicts:
	lib/spack/llnl/util/filesystem.py
 2016-03-08 03:29:57 -08:00
Todd Gamblin
5aadb6df19 Fixes #502. Create install prefix before build, clean up do_install. 
- Fix bug introduced during merge of stage refactor.
  - install prefix was not created before build_environment.fork()
    - build_environment.fork() calls setup_dependent_environment
    - python's setup_dependent_environment can inadvertently create
      the install prefix before directory_layout expects it.

- Clean up Package.do_install:
  - simplify control flow: parent process now entirely responsible for
    creating/destroying the install prefix. cleanup is now in one place.
  - Hoisting cleanup out of the child improves nesting of try/catch in
    `real_work`.
  - `real_work` renamed to `build_process`
 2016-03-08 02:50:26 -08:00
alalazo
77ec27c730 fixed bug : similar issues in checksum and md5 as were solved in ad103dcafa 2016-03-08 11:09:41 +01:00
Todd Gamblin
96e1b2d25c Merge pull request #486 from RemoteConnectionManager/paraview_fix 
Paraview new version
 2016-03-07 02:48:12 -08:00
Todd Gamblin
4d1703fc06 Merge branch 'features/repos-doc-fix' into develop 2016-03-07 02:40:59 -08:00
Todd Gamblin
12ddf241a5 Fix code block in docs. 2016-03-07 02:39:14 -08:00
Todd Gamblin
547933e7e4 Fix bug in -Xlinker argument handling 
- also update test to match.
 2016-03-07 01:48:26 -08:00
Todd Gamblin
f2bcc6cc35 Merge branch 'eschnett/rpath-comma' of git://github.com/eschnett/spack into eschnett-eschnett/rpath-comma 2016-03-06 23:50:14 -08:00
Erik Schnetter
265ef337a8 Don't quote -rpath literal 2016-03-06 23:27:30 -05:00
Todd Gamblin
108277fb5d Fix docs that have gone stale since repos were added. 2016-03-06 19:32:00 -08:00
Todd Gamblin
ada675dea2 Merge branch 'features/sbang' into develop 
Conflicts:
	lib/spack/llnl/util/filesystem.py
 2016-03-06 19:30:19 -08:00
Todd Gamblin
1ee90a6fe7 Make spack_cc, spack_cxx, spack_f77, spack_fc available in build env. 
- Add for convenience for packages that need to refer to these.
- Added an example in the documentation.
 2016-03-06 16:57:30 -08:00
Todd Gamblin
240ada5775 Add expand=False option for URL downloads. 
- Allows skipping the expand step for downloads.
  - Fixed stage so that it knows expansion didn't fail when there is a
    no-expand URLFetchStrategy.

- Updated docs to reflect new option, and provided an example.
 2016-03-06 16:51:09 -08:00
Todd Gamblin
e515042a36 Fix stage creation bug, simplify do_install code. 2016-03-06 01:41:48 -08:00
Todd Gamblin
ad103dcafa Small refactor: add keep parameter to stage, get rid of stage.destroy call. 
- package.py uses context manager more effectively.

- Stage.__init__ has easier to understand method signature now.
  - keep can be used to override the default behavior either to keep
    the stage ALL the time or to delete the stage ALL the time.
 2016-03-05 20:00:30 -08:00
Todd Gamblin
14d48eba46 Revert c5d9ee8924 for bug fixes. 
- This reverts commit c5d9ee8924.

- merged too soon before
- reverting and fixing bugs now.

Conflicts:
	lib/spack/spack/mirror.py
	lib/spack/spack/package.py
 2016-03-05 18:40:28 -08:00
Todd Gamblin
097df180e2 Merge pull request #493 from adamjstewart/features/pgi 
Modifications to get PGI working
 2016-03-05 14:19:15 -08:00
Todd Gamblin
bfce2c7508 Fix bug in hook: ensure bin directory exists before listing. 2016-03-05 04:42:52 -08:00
Todd Gamblin
fc6aa7374a Fix #104, #54: issues with overlong shebang in deep directories. 
This does several things:

- Add `sbang`: a script to run scripts with long shebang lines.
  - Documentation for `sbang` is in `bin/sbang`.

- Add an `sbang` hook that filters the `bin` directory after install
  and modifies any scripts wtih shebangs that are too long to use
  `sbang` instead.

- `sbang` is at the top level, so it should be runnable (not much we
  can do if spack itself is too deep for shebang)
  - `sbang`, when used as the interpreter, runs the *second* shebang
    line it finds in a script.
  - shoud fix issues with too long shebang paths.
 2016-03-05 04:18:48 -08:00
becker33
6449e8b1b9 Merge pull request #492 from adamjstewart/typos/compiler 
Typo fix in compiler docstring
 2016-03-04 14:25:56 -08:00
Adam J. Stewart
5db9673904 Typo fix in compiler docstring 2016-03-04 10:51:41 -06:00
citibeth
202fbc6812 Rmoved periods. Should help use of cut'n'paste from console windows. 2016-03-03 23:40:29 -05:00
Adam J. Stewart
311d71ec86 Modifications to get PGI working 2016-03-03 16:50:51 -06:00
Todd Gamblin
c5d9ee8924 Revert "refactoring proposal : turn Stage into a context manager" 2016-03-03 14:41:20 -08:00
Luigi Calori
a531a4f5e3 help spack versions paraview to get versions without v 2016-03-03 18:00:50 +01:00
alalazo
db92699c02 test : fixed tests that were broken by import optimization 2016-03-03 11:05:36 +01:00
alalazo
7f4a69319a Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/stage 
Conflicts:
	lib/spack/spack/package.py
 2016-03-03 10:19:45 +01:00
alalazo
5ef3621556 stage : minor syntax fix 2016-03-03 10:10:30 +01:00
Todd Gamblin
6701977f1a Merge pull request #475 from LLNL/features/env-and-package-provenance 
Features/env and package provenance
 2016-03-03 00:42:40 -08:00
alalazo
353d12d2e6 stage : added create function as decided in #477 comments 2016-03-03 09:18:47 +01:00
alalazo
717bcb8624 test : optimized import statements 2016-03-03 09:17:49 +01:00
Gregory Becker
4f9a309de8 made spack more conservative in compiler strategies attempted 2016-03-02 16:35:02 -08:00
Gregory Becker
487b2495a1 made spack more conservative in compiler strategies attempted 2016-03-02 16:33:10 -08:00
Mario Melara
2b48728741 Changed os subclasses CNL to change attribute to MODULES 2016-03-02 16:15:34 -08:00
Mario Melara
58efe1550d Default PATH arg 2016-03-02 16:14:42 -08:00
Gregory Becker
16d8c25b23 fixed floating 'target' 2016-03-02 16:12:32 -08:00
Gregory Becker
65d4169f00 fixed type/bug 2016-03-02 16:03:11 -08:00
Gregory Becker
ffb9574312 fixed type/bug 2016-03-02 15:59:23 -08:00
Gregory Becker
6e7b00a0f6 Made module handling much saner and safer 2016-03-02 15:54:23 -08:00
Mario Melara
b4298979fe Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-03-02 14:18:19 -08:00
Gregory Becker
676591ffc0 fixed a bug and a test bug 2016-03-02 14:17:46 -08:00
Mario Melara
975cba295b Added 'better' tests 2016-03-02 14:16:57 -08:00
Mario Melara
e46bac19fa Changed architecture to dict 2016-03-02 12:09:02 -08:00
Mario Melara
90e90f61c1 Got rid of the compiler strategy from target 2016-03-02 12:08:43 -08:00
Mario Melara
47c8e1366f Changed to_dictionary and from_dictionary methods 2016-03-02 12:08:17 -08:00
Gregory Becker
25f20b1967 bug hunting 2016-03-02 11:40:21 -08:00
Glenn Johnson
6bbadbfaac Add CPATH pointing to include directories. 2016-03-02 13:18:43 -06:00
Mario Melara
340ecf6e9a Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-03-02 11:07:52 -08:00
Gregory Becker
86e90bba87 another partial, narrowing in on proper arch 2016-03-02 11:05:05 -08:00
Mario Melara
81e236b2de Changed Arch to class instead of namedtuple. Now platform is automatically set upon creation of class 2016-03-02 11:04:55 -08:00
Gregory Becker
45887dec8e partial work on bug hunting 2016-03-02 10:56:46 -08:00
Mario Melara
f27f2f8e49 Fixed some indentation errors 2016-03-02 10:27:12 -08:00
Mario Melara
4d74784209 Changed add_architecture_from_string and split the work done into two methods add_target_from_string and add_operating_system_from_string 2016-03-02 10:27:00 -08:00
Mario Melara
527bb7abfe Changed _cmp_key 2016-03-02 10:26:09 -08:00
Todd Gamblin
9f6ebd7c6e Merge pull request #465 from citibeth/efischer/160229-RemoteRootBugfix 
Bug Fix: When Spack create roots around for other versions, it someti…
 2016-03-02 10:24:17 -08:00
Gregory Becker
615ea969f8 made arch instantiate as a tuple 2016-03-02 10:14:50 -08:00
Gregory Becker
4601c36f57 cleaned up concretize architecture 2016-03-02 09:55:44 -08:00
alalazo
21cd05aad5 package : updated doc 2016-03-02 17:28:21 +01:00
alalazo
ca41909ec5 package : removed do_clean() 2016-03-02 17:19:27 +01:00
alalazo
4d63544fe9 remove_link_tree : moved to llnl.util.filesystem 2016-03-02 16:55:57 +01:00
alalazo
901e4851b9 _cleanup_dead_links : factored method into a function and put it in llnl.filesystem 2016-03-02 16:19:32 +01:00
alalazo
9001b9ed3c package : minor syntax fixes 
mirror : extracted add_single_spec from create
 2016-03-02 15:56:09 +01:00
alalazo
d649b715ed stage : updated functions doc 
_cleanup_dead_links : fixed minor bug
 2016-03-02 13:16:04 +01:00
alalazo
65b2a24f7c stage : removed _setup method 2016-03-02 13:03:40 +01:00
alalazo
726b350689 test : fixed failing unit tests 2016-03-02 12:52:38 +01:00
Todd Gamblin
a0c6519de9 Fixes #476: create was broken for FTP URLs. 2016-03-02 01:47:54 -08:00
Todd Gamblin
52081c46d6 Fixes #469: Store package.py files in the .spack directory. 
- Adds packages in spack repos inside the .spack directory, so that
  packages can be rebuilt automatically later.
 2016-03-02 00:09:24 -08:00
Todd Gamblin
21d125c914 Fixes #175: Dump environment provenance as well as build log. 2016-03-02 00:08:36 -08:00
Todd Gamblin
be306d09e9 Move repo creation code into repository.py 2016-03-02 00:04:46 -08:00
Todd Gamblin
c488f7c4d8 Fix bug in install permission setting. 2016-03-01 23:57:34 -08:00
Adam J. Stewart
a9f0b98d4d Typo fix 2016-03-01 15:53:53 -06:00
Elizabeth F
a339ac0a72 Bug Fix: When Spack create roots around for other versions, it sometimes finds files it thinks are tarballs, but are not. Previously, it would crash if any such files are found. This change allows it to simply skip them and move on, processing the rest of the files it finds correctly. 2016-02-29 23:04:11 -05:00
Ian Lee
67f327f805 Updated links to use new llnl.gov address 2016-02-28 19:47:19 -08:00
Mario Melara
b591d2b501 Changed operating_system path 2016-02-25 18:49:52 -08:00
Mario Melara
ccd4a79b39 changed architecture.target to architecture.platform_os, so that compiler_for_spec uses operating system strategy 2016-02-25 18:49:27 -08:00
Mario Melara
eb96f38298 Got rid of debug comment 2016-02-25 18:48:25 -08:00
Mario Melara
f0149faf88 Added doc strings to functions in architecture.py 2016-02-25 18:48:00 -08:00
Mario Melara
ac55ce989d Changed compiler finding strategy to come from operating system instead of target 2016-02-25 18:47:41 -08:00
becker33
7176e5ef07 Merge pull request #299 from epfl-scitas/enhancement/os_detection 
enhancement proposal : boolean support for when=<arg>
 2016-02-25 13:38:03 -08:00
Mario Melara
5989e3f65d Changed from_dict to arch_from_dict method 2016-02-25 11:53:02 -08:00
Mario Melara
5e4d3e7b82 Changed naming convention of operating_system, makes it easier to create instance from dictionary just using name without the version attached. Object will stil display as name+version 2016-02-25 11:48:43 -08:00
Mario Melara
550df4cdd6 Some cleaning up. Finally got arch_from_dict working successfully. 2016-02-25 11:47:27 -08:00
Mario Melara
9ac2556285 Deleted old operating_system (without the s) file 2016-02-25 10:41:28 -08:00
Mario Melara
b43a5498a1 Changed import path to operating_systems 2016-02-25 10:36:47 -08:00
Mario Melara
f161609929 Renamed operating_system to operating_systems 2016-02-25 10:36:12 -08:00
Mario Melara
34be473b7c Deleted files 2016-02-25 10:35:58 -08:00
Mario Melara
863a5bc4fa Fix for 'Parent module spack.operating_systems not found while handling absolute import' 2016-02-25 10:34:55 -08:00
Mario Melara
8d1c06d141 Changed to dict method. Didn't realize this was being assigned to a dictionary already so got rid of d['architecture'] 2016-02-24 15:38:33 -08:00
Mario Melara
bd7c189c12 Added more comments 2016-02-24 15:37:50 -08:00
Mario Melara
5c3c6e7f06 Got rid of print statements 2016-02-24 15:34:32 -08:00
Mario Melara
234681306c Changed to appropriate class names for operating system 2016-02-24 15:32:23 -08:00
Mario Melara
2de81cfc62 Changed name to appropriate camelcase 2016-02-24 15:31:21 -08:00
Mario Melara
9e844d974c Added comments. Need to figure out how to make arch_tuple from_dict 2016-02-24 15:30:20 -08:00
Mario Melara
7779974143 arch_from_dict worked on 2016-02-24 15:02:40 -08:00
Mario Melara
339f4bfd23 Added unit testing for to_dict method 2016-02-24 12:16:09 -08:00
Mario Melara
5d5d3c5858 Added to dictionary method 2016-02-24 12:15:52 -08:00
alalazo
6f42dd556d stage : on-going refactoring 2016-02-24 17:37:58 +01:00
alalazo
5ce97eeda5 intel : polished code 2016-02-24 09:17:04 +01:00
Massimiliano Culpo
4316f1cd31 Modified wrapper to have a different behavior when modeis vcheck 2016-02-23 16:57:19 +01:00
Mario Melara
cfa7c4feb8 Added CNL10 as back_os and default_os 2016-02-22 16:18:25 -08:00
Mario Melara
083b7b46d9 Added more tests 2016-02-22 16:17:54 -08:00
Mario Melara
3c87d137a3 Added compiler strategy entry and also added new operating system subclass called CNL for compute node linux (name will probably change because I can't find docs on the EXACT name) 2016-02-22 16:17:33 -08:00
Mario Melara
ebc5e26c2d Added compiler strategy field to Operating System class 2016-02-22 16:16:20 -08:00
Mario Melara
a385dae1ae Unit tests to test operating system subclass creation and whether compiler strategy is set correctly 2016-02-22 14:54:30 -08:00
Mario Melara
1367ccab93 New folder that will hold operating system subclasses 2016-02-22 14:53:55 -08:00
Mario Melara
22bf4bc080 import linux distro subclass. Added method to add operating system to platform dictionary 2016-02-22 14:53:16 -08:00
Mario Melara
1a7d6ed49a import MacOSX subclass and added add_operating_system method to use subclass 2016-02-22 14:52:52 -08:00
Mario Melara
725d6d5fce import linux distro operating system subclass, set front-end os to LinuxDistro() 2016-02-22 14:52:09 -08:00
Mario Melara
a8de45ce28 Got rid of methods used to detect mac osx and linux osx. Now those methods are used my operating system subclasses 2016-02-22 14:50:51 -08:00
Mario Melara
18ddbae60e Added new module path to operating system file 2016-02-22 14:49:53 -08:00
Todd Gamblin
3c1aa9a4ad Merge pull request #298 from epfl-scitas/refactoring/resource_directive 
refactoring proposal : composite for Stage and FetchStrategy
 2016-02-18 23:13:12 -08:00
Mario Melara
28218755a5 Changed spec.target to spec.architecture 2016-02-18 13:06:55 -08:00
Todd Gamblin
d8a70166d3 Fixes #434 
Compiler detection was not getting triggered properly with some of the
new config logic.  Adjust the conditions under which Spack will serach
for compilers.
 2016-02-18 00:56:29 -08:00
Todd Gamblin
c112cf66fe Merge pull request #443 from trws/dicts-like-string-keys 
remove the unprotected key name from create.py
 2016-02-17 17:06:51 -08:00
Tom Scogland
00125e4688 remove the unprotected key name from create.py 
Small fix to use dicts correctly.
 2016-02-17 16:43:36 -08:00
Mario Melara
93a92a00ee Changed abstract.target to abstract.architecture.target and abstract.architecture.target.concrete 2016-02-17 14:53:09 -08:00
Mario Melara
d9e8bf1807 Added ARCHITECTURE field when showing specs 2016-02-17 14:51:14 -08:00
Mario Melara
54042e399b Changed target to architecture.target 2016-02-17 14:50:10 -08:00
Mario Melara
1d484dbe5f Changed so that modules use correct file path with spec.architecture instead of spec.target 2016-02-17 14:49:36 -08:00
Mario Melara
ab4006ee2c Changed so that directory layout uses the platform-os-target string version of the arch tuple 2016-02-17 14:48:53 -08:00
Mario Melara
524e9b372e From now on all targets are now architecture. Architecture is a named tuple so any time we need access to target we do architecture.target. 2016-02-17 14:47:29 -08:00
Mario Melara
2c20fc2ebf Changed module loading to use arch tuple instead of regular target.module 2016-02-17 14:45:53 -08:00
Mario Melara
2a79537ba1 Fixed silly typo that gave errors in tests 2016-02-17 14:44:38 -08:00
Mario Melara
a3039c4c67 Changed add_architecture_from_string, it now loops through the string and checks whether each piece of string is a valid platform, operating system and target. If the operating system or target are none it will use the defaults. Updated the documentation for that method. One thing that bothers me is how to account for the multitude of operating systems when cross compiling. If someone wants to compile with another operating system not found on current platform. How can spack check to see if it is valid? 2016-02-16 15:26:07 -08:00
Mario Melara
62b0293963 Cleaned up the file. Got rid of commented out sections of code since they weren't going to be used anyway 2016-02-16 15:23:38 -08:00
Mario Melara
31ab238306 Beginning attemps to fix concretization method to account for the new tuple architecture 2016-02-16 15:22:23 -08:00
Mario Melara
19dca4bcc9 Added some _cmp_key methods to OperatingSystem class, and also changed the way Platforms are compared. Created a mini inherited class named Arch that inherits from namedtuple. The reason for this is to override the namedtuple __str__ method to make arch tuples look prettier when printed out. Rather than Arch(platform= ... ) it prints to platform-os-target which makes directory paths to packages look cleaner. 2016-02-16 15:21:36 -08:00
Mario Melara
35a602baaf Changed target checking to architecture checking for abi compatible 2016-02-16 15:17:57 -08:00
Erik Schnetter
9868333e8e Shell quoting is difficult 2016-02-14 11:34:08 -05:00
Erik Schnetter
a06e29fecb More quoting experiments 2016-02-14 10:43:55 -05:00
Erik Schnetter
43670cbbd0 More games with quoting 2016-02-13 22:01:36 -05:00
Erik Schnetter
52647b9a5d Using regexes instead of globbing to match path names 2016-02-13 17:55:14 -05:00
Mario Melara
c799301011 Changed the method in which architecture is converted from string to namedtuple. Also added some TODO comments to later consider changing how architecture is handled 2016-02-13 14:37:07 -08:00
Mario Melara
7732f375d2 Changed operating system getter so that linux and darwin autodetected operating systems are set as class default_os 2016-02-13 14:36:01 -08:00
Erik Schnetter
69064395eb Add debug output 2016-02-13 15:12:09 -05:00
Erik Schnetter
9a2c1090a6 Handle -Wl,-rpath,... syntax 2016-02-13 14:54:18 -05:00
Erik Schnetter
dc6a33b716 Handle multiple -Wl,-rpath,... paths 2016-02-13 14:54:18 -05:00
Erik Schnetter
5038a38e29 Correct -Xlinker arguments 2016-02-13 14:54:18 -05:00
Erik Schnetter
2cd9ad8ce6 Use "-Wl,-rpath," instead of "-Wl,-rpath=" 
The former translates to a linker argument "-rpath DIR", whereas the latter translates to "-rpath=DIR". The latter is not support on OS X.
 2016-02-13 14:54:18 -05:00
Erik Schnetter
ff81aff254 Remove source-code optimization and cleanup 2016-02-12 13:05:42 -05:00
Erik Schnetter
64436e7752 Merge branch 'develop' into correct-cc 2016-02-12 12:55:26 -05:00
David Beckingsale
90e1b1f0ea Use hash to make shorter module and dotkit names, fixes #433 2016-02-12 09:33:19 -08:00
Mario Melara
8e8c63bd67 Using pylint, fixed some of the indentation and spacing errors 2016-02-11 11:47:39 -08:00
Mario Melara
3e1be63b0f Changed some variables to account for the fact that target is now a tuple 2016-02-11 11:15:50 -08:00
Mario Melara
b9d09202c9 changed some variables to account for the fact that target is now a tuple 2016-02-11 11:15:19 -08:00
Mario Melara
77e93e1b79 Added add_os method to platform subclasses 2016-02-10 16:16:58 -08:00
Mario Melara
cb8d5ab183 Added new add_os method 2016-02-10 16:16:35 -08:00
Mario Melara
fb234205c2 Added method to concretize target and os pair 2016-02-10 16:16:11 -08:00
Mario Melara
d0ae6dd401 Changed add_target_from_string to include methods to concretize operating_system 2016-02-10 16:15:25 -08:00
Mario Melara
2650c60374 Added operating system class prototype and some autodetect features for operating system 2016-02-10 16:14:50 -08:00
Todd Gamblin
bcf705b85e Merge pull request #432 from RemoteConnectionManager/paraview_fix 
Paraview fix
 2016-02-10 13:59:08 -08:00
Mario Melara
21a5a34041 Revert "new branch and also pushing some architecture changes where os is detected by linux and darwin and manually set by cray and bgq" 
This reverts commit 70088be24b2ed34076f7f5292a2a465a8655a886.
 2016-02-10 10:59:16 -08:00
Luigi Calori
25e2be3efd RPATH was collecting all lib from all dependencies, when dep tree is deep like in ParaView the path was growing too much, showing install problems now just direct dependencies rpath is added 2016-02-10 13:28:01 +01:00
Todd Gamblin
f7134990bd Fix #430: edit -f fails with UnknownPackageError 
- Recent external repo refactoring made `repo_for_pkg` raise an error
  when the package was not known.

- Correct behavior is to return the highest precedence repo.
 2016-02-09 08:57:27 -08:00
Mario Melara
0358522533 new branch and also pushing some architecture changes where os is detected by linux and darwin and manually set by cray and bgq 2016-02-06 15:41:22 -08:00
Nicolas Richart
824546d343 correcting a bug when url and files are mixed 2016-01-28 14:43:30 +01:00
Nicolas Richart
5850d8530e Adding the stager to checksum any url that spack can handle 2016-01-28 14:22:28 +01:00
alalazo
0cf03518f3 reverted deletion of the wrong architecture.py 2016-01-28 12:06:30 +01:00
alalazo
603f5e69ee removed outdated code : os detection (will be handled by platforms) and openssl modifications 2016-01-28 11:30:28 +01:00
alalazo
e76b722e28 Merge branch 'develop' of https://github.com/LLNL/spack into enhancement/os_detection 2016-01-28 11:26:01 +01:00
alalazo
07bb6fef01 resource directive : now works with all the fetch strategies available 2016-01-28 10:58:56 +01:00
alalazo
47035671e8 unit tests : now compliant with 2.6 2016-01-27 17:22:12 +01:00
alalazo
f7f192e12b Added unit tests for util.pattern 2016-01-27 17:12:24 +01:00
Gregory L. Lee
7891346a4f fix for issue 398, added extensions_for in RepoPath 2016-01-26 09:52:01 -08:00
alalazo
ee6f69a227 Unit tests : hack to make them pass while a decision on how to proceed is made 2016-01-26 14:25:16 +01:00
alalazo
5e3b7a4247 Fixes issues introduced after merge with conflicts 2016-01-26 14:11:23 +01:00
alalazo
093b831799 Fixes issues introduced after merge with conflicts 2016-01-26 12:08:28 +01:00
alalazo
6f11a64af5 Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/resource_directive 
Conflicts:
	lib/spack/spack/fetch_strategy.py
	lib/spack/spack/mirror.py
	lib/spack/spack/package.py
 2016-01-26 08:59:25 +01:00
Matthew LeGendre
d4a771a623 Merge pull request #1 from alalazo/features/external-packages 
doc : minor typos fixed
 2016-01-25 10:53:37 -08:00
Matthew LeGendre
fa888a4ba1 Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/cmd/mirror.py
	lib/spack/spack/concretize.py
	lib/spack/spack/config.py
	lib/spack/spack/spec.py
	lib/spack/spack/stage.py
	var/spack/packages/mvapich2/package.py
 2016-01-25 10:52:17 -08:00
Todd Gamblin
004c99ab2f Fixes #259: Apple clang compiler detection 
- Clang compilers are now versioned with the raw LLVM version or, on
  macs, with Apple's version with a suffix.
 2016-01-25 03:48:22 -08:00
Adam J. Stewart
fb5274145a Fix regex to find version on OS X 2016-01-25 03:10:13 -08:00
Todd Gamblin
41cd8f8e6d Fixes #74: minor fixes to spack mirror. 2016-01-25 02:57:23 -08:00
Todd Gamblin
5502fd1054 More thorough mirror test: test full round-trip 
- Old test: did not attempt to actually fetch mirrored packages.

- New test:
  1. Creates a temporary mirror,
  2. Registers it with spack,
  3. Fetches from it, and
  4. Verifies that the fetched archive matches the original

- This test will hopefully mean that `spack mirror` is less brittle
  from now on.
 2016-01-25 01:59:02 -08:00
Todd Gamblin
a48d0a494f Refactor mock_repo: add a destroy() method. 
- classes using mock_repo need not know about its stage now.
 2016-01-25 00:34:33 -08:00
Todd Gamblin
d3ff8ca00f Fixes #382: Issues with spack fetch. 
- urljoin() was compliant with RFC 1808 but not with my understanding
  of how paths should be joined.
- updated path joining logic to comply.
 2016-01-24 20:14:40 -08:00
Todd Gamblin
fe50593c66 Minor line width reductions. 2016-01-24 20:14:21 -08:00
Todd Gamblin
be354e85c9 Better errors for mkdirp failure in mirror. 2016-01-24 16:16:43 -08:00
Todd Gamblin
64a9549225 Minor cleanup. 80 char width for command description. 2016-01-24 15:31:07 -08:00
Adam J. Stewart
571386cdf4 Remove cxx symlink, tell NAG to look for c++ symlink 2016-01-21 13:55:59 -06:00
Adam J. Stewart
ca3edc3673 Add symlink cxx to point to cc 2016-01-21 13:20:39 -06:00
Todd Gamblin
10848c2e9a Refactor args for Executable.__call__ 
- simplify output, error, and input redirection
- `return_output=True` is now `output=str`
- `return_output=True` will still work for the time being but is
  deprecated.

- previously you could say `return_output=True` and `output=<stream>`,
  which wouldn't actually write to the stream.  Now you actually can't
  specify erroneous cases since there is only one parameter with
  mutually exclusive options..
 2016-01-21 10:46:33 -08:00
Todd Gamblin
1c2a2dde8e Merge pull request #350 from adamjstewart/features/nag 
Add NAG Fortran Compiler support
 2016-01-20 17:09:31 -08:00
Adam J. Stewart
088b6f0ea9 Fixed typo when running spack help 2016-01-20 17:19:01 -06:00
Adam J. Stewart
e25150296a Redirect STDERR to STDOUT for compiler version 
This is necessary for the NAG Fortran compiler, which prints its version message to STDERR instead of STDOUT. This message was previously being ignored, preventing spack from finding the compiler's version or automatically adding it to the compilers.yaml configuration file.
 2016-01-20 14:44:43 -06:00
Mario Melara
840b41c450 Removed unneccessary $. Still learning regexp 2016-01-20 10:36:15 -08:00
Mario Melara
15713219e5 Better regular expression searching. Tested on edison was finding test compilers and then spack was giving multiple compiler match errors 2016-01-20 10:32:56 -08:00
alalazo
72d5cdf9ab fixed two minor typos 2016-01-20 11:19:36 +01:00
Ben Boeckel
6c9800bcc3 typos: fix some letter transposes 2016-01-19 15:22:16 -05:00
Adam J. Stewart
83de658ee4 Modify nag.py to match new compiler package structure 2016-01-19 13:28:35 -06:00
Adam J. Stewart
e6aa2610bc Add symlink for NAG Fortran Compiler 2016-01-19 13:07:07 -06:00
Adam J. Stewart
fe640d764a Merge branch 'develop' into features/nag 
* develop: (77 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 09:56:02 -06:00
Todd Gamblin
cee7bfa9f0 Simplify output redirection in spack.util.executable 
- By default inherit parent's input/output descriptor
- Only use pipes if we need to return output.
- Allows subprocesses (like emacsclient) to detect terminal correctly
 2016-01-19 01:16:14 -08:00
Todd Gamblin
ad32f64ef6 Allow completely empty config files. 
- Previous version would give validation error for an empty file.
  Now this is properly ignored.

- Also includes bugfix in ConfigFormatError
 2016-01-19 01:16:14 -08:00
Todd Gamblin
8d6342c53d Merge branch 'mplegendre-multi_pkgsrc_roots' into develop 
- This moves var/spack/packages to var/spack/repos/builtin/packages.

- Packages that did not exist in the source branch, or were changed in
  develop, were moved into var/spack/repos/builtin/packages as part of
  the integration.

Conflicts:
	lib/spack/spack/test/unit_install.py
	var/spack/repos/builtin/packages/clang/package.py
 2016-01-19 01:16:08 -08:00
Todd Gamblin
c1e57e49ae Merge pull request #202 from scheibelp/features/unittest-xml-output-nose 
Features/unittest xml output nose
 2016-01-17 19:14:49 -08:00
Todd Gamblin
97b492756a Fix create, diy, edit, and repo commands to use multiple repos. 2016-01-17 18:14:35 -08:00
Todd Gamblin
5984bc2ad3 Add namespace option to find command. 2016-01-17 18:12:53 -08:00
Todd Gamblin
358b2ab4ba Temporary fix: Clang is the default compiler on Mac OS X. 2016-01-17 18:12:08 -08:00
Gregory Becker
8e54babf10 minor parsing bug fix 2016-01-15 17:21:32 -08:00
Gregory Becker
e1a0af8745 cleanup 2016-01-15 16:51:41 -08:00
Gregory Becker
16e9d658d5 Fixed the way flags on deps are attached so that they aren't moved onto the root before normalize/concretize 2016-01-15 16:18:40 -08:00
Gregory Becker
342f4bc2e0 Fixed virtual/cflag combination bug 2016-01-15 14:27:50 -08:00
Todd Gamblin
aa00999fca update compiler config test. 2016-01-14 12:00:56 -08:00
Todd Gamblin
d869d8e86f add sanity check on config write as well as validation on read. 2016-01-14 12:00:44 -08:00
Todd Gamblin
b567cb57e1 Add jsonschema validation for config files. 2016-01-14 10:41:35 -08:00
Todd Gamblin
05b30bf83e Make text wrapping off by default in tty, add a kwarg for it. 2016-01-14 10:26:31 -08:00
Adam J. Stewart
f9fbb57d31 Add NAG Fortran Compiler support 2016-01-13 12:32:04 -06:00
Gregory Becker
848728858c Removed extra plus signs from command line syntax. Did not yet remove them from printed format 2016-01-12 18:34:26 -08:00
Gregory Becker
5e3c883f2c Cleanup and proper flag satisfaction for partial specs 2016-01-12 16:25:54 -08:00
Gregory Becker
528f9cd583 Implemented flags as lists for subsetting 2016-01-12 15:22:15 -08:00
Gregory Becker
2ac5ea42af Fixed concretization 2016-01-11 13:55:11 -08:00
Mario Melara
aab1a67d05 Adding needed import modules. Changed platform_name to platform to prevent syntax errors 2016-01-09 09:42:36 -08:00
Gregory Becker
9615efd940 cleanup: Removing an unnecessary line in an otherwise unchanged file 2016-01-08 18:53:19 -08:00
Gregory Becker
41046499c6 minor bug chasing 2016-01-08 18:51:38 -08:00
Gregory Becker
6e5238d037 Fixing the fix and removing debug printing 2016-01-08 17:44:16 -08:00
Gregory Becker
2b2d4bae4e Fixing multimethod test for new platforms 2016-01-08 17:38:37 -08:00
Gregory Becker
2b4dd8b9af Fixed target satisfaction and updated tests accordingly 2016-01-08 16:30:27 -08:00
Gregory Becker
aa28e4e81f Improved error messages for compiler_for_spec when either zero or multiple compilers returned. 2016-01-08 15:13:48 -08:00
Gregory Becker
d3d37ad0ce removed the submodule as part of reversion of extraneous commits 2016-01-08 14:29:42 -08:00
Gregory Becker
ba63111f45 brought the architecture test up to date with new changes 2016-01-07 13:05:58 -08:00
Gregory Becker
53d4f82ce1 Improved cray architecture class 2016-01-07 13:01:05 -08:00
Gregory Becker
83917c4c30 Improved target specification 2016-01-07 12:43:39 -08:00
Gregory Becker
6ccd9d6fa4 Cleaned up naming conventions for architecture, split into platform and target 2016-01-07 11:49:01 -08:00
Gregory Becker
b4a0004f44 Improved target cmp_key and to/from yaml functions 2016-01-06 14:50:31 -08:00
Gregory Becker
51bd91edc0 made the compiler strategy more easily controllable 2016-01-06 13:00:22 -08:00
Gregory Becker
61b03b72b0 improved concretize efficiency for determining whether compilers come from the proper strategy 2016-01-05 19:03:25 -08:00
Gregory Becker
93c9c45580 minor tweak of compiler priority while waiting for customizable compiler priorities 2016-01-05 17:19:04 -08:00
Gregory Becker
29e0ff61d7 fixed compiler finding so as not to identify non-existent versions of the intel compiler based on the version numbers of the PrgEnv-intel module 2016-01-05 17:14:35 -08:00
Gregory Becker
c649610473 fixed concretization to only consider compilers found by the proper strategy 2016-01-05 17:00:28 -08:00
Gregory Becker
d6768cf921 minor bug fix 2016-01-05 16:23:32 -08:00
Gregory Becker
48b9023de4 removed debug printing 2016-01-05 14:51:18 -08:00
Gregory Becker
751503c434 fixed haswell targeting bug 2016-01-05 14:47:14 -08:00
Gregory Becker
1edbaa4e62 removed debug printing 2016-01-05 14:13:09 -08:00
Gregory Becker
9848ad32fd fixed errors caused by crayport on linux and added a darwin architecture 2016-01-05 13:39:53 -08:00
Gregory Becker
d2c2c46541 bug hunting 2016-01-05 11:12:14 -08:00
Gregory Becker
751208cedf pick last compiler instead of first, will be overwritten by more advanced preferences as mentioned in the email group 2016-01-04 16:35:06 -08:00
Gregory Becker
53808f254e Support for cray external dependencies implemented in modules 2016-01-04 12:36:48 -08:00
Gregory Becker
ff82e41404 Merge branch 'externals' into crayport 2016-01-04 10:46:25 -08:00
Todd Gamblin
b02faf5641 add/remove/list working for new config format. 
- mirrors.yaml now uses dict order for precedence, instead of lists of
  dicts.

- spack.cmd now specifies default scope for add/remove and for list
  with `default_modify_scope` and `default_list_scope`.
  - commands that only read or list default to all scopes (merged)
  - commands that modify configs modify user scope (highest
    precedence) by default
  - These vars are used in setup_paraser for mirror/repo/compiler.

- Spack's argparse supports aliases now.
  - added 'rm' alias for `spack [repo|compiler|mirror] remove`
 2016-01-03 02:27:50 -08:00
Todd Gamblin
21fae634a5 Add Python 3 aliases to our argparse backport. 2016-01-03 01:19:03 -08:00
Todd Gamblin
56937416a9 All tests that call concretize() need to be MockPackagesTests. 2016-01-02 18:18:00 -08:00
Todd Gamblin
20b7f8a8e0 Fix bug in tests. 2016-01-02 14:25:10 -08:00
alalazo
bf4231dd4b depends_on and when multimethod support boolean 2016-01-02 22:48:14 +01:00
alalazo
d95d169ac5 fixed broken unit tests 2016-01-02 19:04:06 +01:00
alalazo
f499f71f64 Package : factored out code in do_stage and do_fetch, changed mirror command accordingly 2016-01-02 16:15:30 +01:00
alalazo
dcddb19e5b added class decorator to define composite classes 2016-01-01 17:35:01 +01:00
Tom Scogland
4ae98f8b21 significant llvm update 
This update significantly reworks the llvm and clang packages.  The llvm
package now includes variants allowing it to build and install any and
all of:

* clang
* lldb
* llvm's libunwind (why, WHY did they name it this?!?)
* polly (including building it directly into the clang tools, 3.7.0 only)
* clang extra tools
* compiler-rt (sanitizers)
* clang lto (the gold linker plugin that allows same to work)
* libcxx/libcxxabi
* libopenmp, also setting the default openmp runtime to same, when
  parameters happen this shoudl be an option of libomp or libgomp

Ideally, this should have rpath setup like the gcc package does, but
clang's driver has no support for specs as such, and no clearly
equivalent mechanism either.  If anyone has ideas on this, they would be
welcome.

One significant note related to gcc though, if you test this on LLNL
systems, or anywhere that has multiple GCCs straddling the dwarf2
boundary and sharing a libstdc++, build a gcc with spack and use that to
build clang.  If you use a gcc4.8+  to build this with an older
libstdc++ it will fail on missing unwind symbols because of the
discrepancy.

Resource handling has been changed slightly to move the unpacked archive
into the target rather than use symlinks, because symlinks break certain
kinds of relative paths, and orders resource staging such that nested
resources are unpacked after outer ones.
 2015-12-30 16:59:39 -08:00
Tom Scogland
fcdf08e4d7 allow nested resources 
This solution doesn't really make me happy, but does seem to work.  It
sorts the resources by the length of the string representing their
destination.  Since any nested resource must contain another resource's
name in its path, it seems that should work, but there should be a
better way to do this.
 2015-12-30 16:59:39 -08:00
Tom Scogland
cc8c783bb2 adding errno import for the deep directory creation patch 2015-12-30 16:59:39 -08:00
Tom Scogland
30f5ccb80d create leading directories for resources 
This allows resources to be placed into subdirectory trees that may not
exist in the base package, and may depend on other resources to be
staged later.
 2015-12-30 16:59:39 -08:00
Todd Gamblin
e8e6368cc8 Rework mirror configuration. 
- All of these work:
  - `spack mirror add`
  - `spack mirror remove`
  - `spack mirror list`

- `spack mirror` subcommands (except create) now have their own
  --scope argument.

- Mirror config is now stored sanely as an ordered list.
 2015-12-28 01:14:41 -08:00
Todd Gamblin
1f8ba53ca7 Rework compiler configuration and simplify config.py logic. 
- `spack compiler` subcommands now take an optional --scope argument.

- no more `remove_from_config` in `config.py` -- `update` just
  overwrites b/c it's easier to just call `get_config`, modify YAML
  structures directly, and then call `update`.

- Implemented `spack compiler remove`.
 2015-12-28 00:46:51 -08:00
Todd Gamblin
ff0d871612 Remove mock_configs; tests no longer modify spack home directory. 2015-12-27 21:13:18 -08:00
Todd Gamblin
39e360f93a Add custom YAML loader & dumper to track lines & maintain dict order. 
- Configs are now parsed with `spack.util.spack_yaml.load/dump`

- Parser annotates returned data with `_start_mark` and `_end_mark`
  properties, so that we can recover what lines/files they came from.

- Parser uses `OrderedDict` instead of `dict`.  This will help
  maintain some sanity when round-tripping config files.
 2015-12-27 17:51:11 -08:00
Todd Gamblin
4e8e298eb3 Uncomment disabled tests. 2015-12-27 17:40:31 -08:00
Todd Gamblin
487ac9cd19 Merge pull request #277 from LLNL/bugfix/vcs-mirror-fetch 
Fix #85 and #228: errors fetching VCS packages from a mirror.
 2015-12-26 09:28:38 -08:00
Todd Gamblin
bef52570ae Default to scope with highest precedence instead of user scope, 
- Generalizes config scopes a bit more: nothing assumes there is a
  'user' scope (this would break testing sometimes).
 2015-12-25 18:42:06 -08:00
Todd Gamblin
c65fd3a289 Merge branch 'develop' into mplegendre-multi_pkgsrc_roots 
Conflicts:
	lib/spack/spack/cmd/create.py
	lib/spack/spack/cmd/extensions.py
	lib/spack/spack/cmd/fetch.py
	lib/spack/spack/cmd/uninstall.py
	lib/spack/spack/config.py
	lib/spack/spack/database.py
	lib/spack/spack/directory_layout.py
	lib/spack/spack/packages.py
	lib/spack/spack/spec.py
 2015-12-25 16:35:55 -08:00
Todd Gamblin
34401cf0c3 Rework Spack config: keep user & site config in memory. 
- User and site config are now kept separately in memory.
- Merging is done on demand when client code requests the configuration.
- Allows user/site config to be updated independently of each other by commands.
- simplifies config logic (no more tracking merged files)
 2015-12-25 14:00:33 -08:00
Todd Gamblin
52625de52c Fix #154 -- better log messages for do_patch() 2015-12-24 11:37:40 -08:00
Todd Gamblin
f37f872e5f Fix #85 and #228: errors fetching VCS packages from a mirror. 
- Stage and fetcher were not being set up properly when fetching using
  a different fetch strategy than the default one for the package.

- This is fixed but fetch/stage/mirror logic is still too complicated
  and long-term needs a rethink.

- Spack will now print a warning when fetching a checksum-less tarball
  from a mirror -- users should be careful to use https or local
  filesystem mirrors for this.
 2015-12-23 16:23:58 -08:00
Todd Gamblin
5ca5884ad6 Fix #235: Smarter web spidering -- use parsed links instead of reconstructing. 
- Move `find_versions_of_archive` from spack.package to `spack.util.web`.

- `spider` funciton now just uses the link parsing it already does to
  return links.  We evaluate actual links found in the scraped pages
  instead of trying to reconstruct them naively.

- Add `spack url-parse` command, which you can use to show how Spack
  interprets the name and version in a URL.
 2015-12-23 13:16:57 -08:00
Todd Gamblin
d63cb8b537 Fix bug in URL regex. 2015-12-22 17:05:23 -08:00
Todd Gamblin
0d4b77a24b revert accidental print statements. 2015-12-22 17:02:14 -08:00
Todd Gamblin
2b89d9b1db More consistent URL parsing when finding versions. 
Versions found by wildcard URLs are different from versions found by
parse_version, etc.  The wildcards are constructed more haphazardly
than the very specific URL patterns in url.py, so they can get things
wrong.  e.g., for this URL:

    https://software.lanl.gov/MeshTools/trac/attachment/wiki/WikiStart/mstk-2.25rc1.tgz

We miss the 'rc' and only return 2.25r as the version if we ONLY use
URL wildcards.

Future: Maybe use the regexes from url.py to scrape web pages, and
then compare them for similarity with the original URL, instead of
trying to make a structured wildcard URL pattern?  This might yield
better results.
 2015-12-22 16:59:00 -08:00
Erik Schnetter
9017ec5865 Merge branch 'develop' into correct-cc 2015-12-22 15:49:43 -05:00
Erik Schnetter
3427174eb0 Correct quoting 2015-12-22 15:49:14 -05:00
Todd Gamblin
b1d40efd99 Merge pull request #261 from LLNL/features/prefer-versions-in-packages 
Add ability to prefer particular versions in packages.
 2015-12-22 08:25:52 -08:00
Todd Gamblin
157e42de22 Merge pull request #264 from nolta/typos 
fix a few comment typos
 2015-12-22 07:56:54 -08:00
Todd Gamblin
792b033255 Slightly more robust tmp directory search. 
- remove getcwd() check (seems arbitrary -- if users set their TMPDIR
  to this why stop them?)

- try a number of common locations and try per-user directories in
  them first.
 2015-12-22 07:54:25 -08:00
Mike Nolta
61f07b0c4d fix a few comment typos 2015-12-21 19:24:16 -05:00
Mike Nolta
2ba6bb21fb fix #249 (tmp spack-stage directories conflict) 2015-12-21 18:50:58 -05:00
Todd Gamblin
fe0fdf60b4 Add ability to prefer particular versions in packages. 
- Adding `preferred=True` to a version directive will change its sort
  order in concretization.

- This provides us a rudimentary ability to keep the Spack stack
  stable as new versions are added.

- Having multiple stacks will come next, but this at least allows us
  to specify default versions of things instead of always taking the
  newest.
 2015-12-21 15:35:47 -08:00
Todd Gamblin
73ea15db8e Merge pull request #208 from epfl-scitas/features/resource_directive 
resource directive : implementation + clang / llvm use case
 2015-12-21 10:34:16 -08:00
Erik Schnetter
611537eaed Merge branch 'develop' into correct-cc 2015-12-21 13:18:35 -05:00
Erik Schnetter
ba22fc8b78 Simplify Spack cc script 2015-12-21 10:21:33 -05:00
Todd Gamblin
dccfcd10f7 Merge pull request #255 from LLNL/bugfix/254-libtool-compiler-name-issues 
Fix #254: libtool & distutils want certain compiler names.
 2015-12-20 16:56:59 -08:00
Todd Gamblin
1b086c928c Merge pull request #227 from trws/fetch-deps 
fetch: add options to fetch missing or all deps
 2015-12-19 21:02:42 -08:00
Todd Gamblin
9edba18489 Merge pull request #230 from nolta/fix-env-mod-sys-type 
fix environment module path when $SYS_TYPE isn't defined
 2015-12-19 20:59:13 -08:00
Todd Gamblin
32f96b5c73 Fix stale code in python version test so that it actually works. 2015-12-19 20:04:00 -08:00
Mike Nolta
429e15c4a6 spack python: add -c option 
Allows passing program in as a string. Example:

    $ spack python -c 'print 2+3'
    5

Also imports spack module by default into the environment.
 2015-12-19 16:32:17 -05:00
Gregory Lee
df5dc1c9bb Merge pull request #253 from LLNL/bugfix/244-uninstall-errors 
Bugfix/244 uninstall errors
 2015-12-19 08:06:36 -08:00
Todd Gamblin
7cc4d88726 Fix #254: libtool & distutils want certain compiler names. 
This changes the compiler wrappers so that they are called by the same
name as the wrapped compiler.  Many builds make assumptions about
compiler names, and we need the spack compilers to be recognizable so
that build systems will get their flags right.

This adds per-compiler subdirectories to lib/spack/spack/env directory
that contain symlinks to cc for the C, C++, F77, and F90
compilers. The build now sets CC, CXX, F77, and F90 to point to these
links instead of to the generically named cc, c++, f77, and f90
wrappers.
 2015-12-19 02:06:47 -08:00
Todd Gamblin
52e3364efa Fix #244: errors on uninstall 
- Extension logic didn't take conditional deps into account.

- Extension methods now check for whether the extnesion is
  in the extendee map AND whether the dependency is actually present
  in the spec yet.
 2015-12-18 22:24:35 -08:00
Todd Gamblin
b7e926eef6 minor formatting. 2015-12-18 22:24:22 -08:00
Todd Gamblin
ce8bd20944 Fix import error. 2015-12-18 22:23:51 -08:00
Todd Gamblin
abd3d3946d Format to 80 char width. 2015-12-18 19:23:45 -08:00
Gregory Becker
217a2d9ea5 fixed yaml error 2015-12-17 15:26:27 -08:00
Erik Schnetter
5d61888657 Correct Spack cc script 2015-12-17 10:13:39 -05:00
Gregory Lee
9cab88071b Merge pull request #239 from LLNL/bugfix/238-db-specs-not-concrete 
Fix #238: Database specs need to be concrete when read in as well.
 2015-12-16 11:37:51 -08:00
Mike Nolta
82aa366adf minor comment tweak in modules.py 2015-12-16 11:43:07 -05:00
Todd Gamblin
2f9ee88408 Fix #238: Database specs need to be concrete when read in as well. 2015-12-15 17:15:37 -08:00
Todd Gamblin
6e074a196a Fix #206: need to make deps AND root concrete when read in. 2015-12-14 21:06:32 -08:00
Todd Gamblin
afbd0e77d0 Make internal hash dep sort order match external one. 2015-12-11 16:47:34 -08:00
Todd Gamblin
3dd6cbc556 Fix #217: update spec_dag test for new _cmp_key. 2015-12-11 13:07:20 -08:00
Todd Gamblin
6ee2eb21dd Fix #217: Use MUCH faster hashing, reduce number of DAG copies. 
This changes the hash algorithm so that it does much less object
allocation and copying, and so that it is correct.

The old version of `_cmp_key()` would call `sorted_deps`, which would
call `flat_dependencies` to get a list of dependencies so that it
could sort them in alphabetical order.  This isn't necessary in the
`_cmp_key()`, and in fact we want more DAG structure than that to be
included in the `_cmp_key()`.

The new version constructs a tuple without copying the Spec DAG, and
the tuple contains hashes of sub-DAGs that are computed recursively
in-place.  This is way faster than the previous algorithm and reduces
the numebr of copies significantly. It is also a correct DAG hash.

Example timing and copy counts for the different hashing algorithms
we've tried:

Original (wrong) Spec hash:
```
106,170 copies
real    0m5.024s
user    0m4.949s
sys     0m0.104s
```

Spec hash using YAML `dag_hash()`:
```
3,794 copies
real    0m5.024s
user    0m4.949s
sys     0m0.104s

New no-copy, no-YAML hash:
```
3,594 copies
real    0m2.543s
user    0m2.435s
sys     0m0.104s
```

So now we have a hash that is correct AND faster.

The remaining ~3k copies happen mostly during concretization, and as
all packages are initially loaded.  I believe this is because Spack
currently has to load all packages to figure out virtual dependency
information; it could also be becasue there ar a lot of lookups of
partial specs in concretize.  I can investigate this further.
 2015-12-11 12:40:27 -08:00
Mario Melara
b5216f6ec8 Commented out cxxflag. Not 100% sure it's needed 2015-12-11 12:07:32 -08:00
Mario Melara
31df2dd9dd Fixed targets ti be x86_64, important note: have not tested this on linux machine 2015-12-11 12:04:47 -08:00
Mario Melara
fee88d289d Rewrote docstrings for sys_type() and got rid of unused functions 2015-12-11 12:03:13 -08:00
Todd Gamblin
7526a89463 Fix #217: Make package cache use DAG hash instead of sorted deps. 
- Gets rid of last vestige of old-style specs.
- Uses new hashing for lookup
 2015-12-11 02:17:17 -08:00
Tom Scogland
281a869ef6 fix path resolution for mirror packages, especially with dependency fetching 2015-12-10 09:24:01 -08:00
Tom Scogland
786f4cd2c2 add dependency fetching to mirror creation 2015-12-10 08:32:51 -08:00
Tom Scogland
25f2b01a3c fetch: add options to fetch missing or all deps 
Small additions to fetch to make it easier to fetch all files necessary for a
build on a system without network connectivity.
 2015-12-10 07:27:06 -08:00
alalazo
20e67bc5e6 clang : solve the issue with missing default include paths for OpenMP and libc++ 
resource : support for finer grained linking of resources
 2015-12-09 17:15:26 +01:00
Todd Gamblin
537451f0b1 bugfix: doc build needed additional sys.path due to externals change. 2015-12-09 01:32:12 -08:00
Todd Gamblin
c41b9b7ddc Change github.com/scalability-llnl to github.com/llnl everywhere. 2015-12-09 01:24:15 -08:00
Peter Scheibel
530e049d4a Added nose 1.3.7 source along with with the lgpl license (renamed from lgpl.txt 
to LICENSE)
 2015-12-04 17:55:20 -08:00
Massimiliano Culpo
50bd4d2e4e mirror : deals correctly with variants that optionally enable resources (if they are archive URLs) 2015-12-03 11:21:11 +01:00
Mario Melara
028cca16e6 Got rid of the unusued default strategy=None 2015-12-02 10:15:33 -08:00
Massimiliano Culpo
39a3cfd4d9 reource directive accepts 'basename' keyword 
llvm : libc++ variant
 2015-12-02 12:24:37 +01:00
Massimiliano Culpo
4b2168ab8e resources : added missing check after fetch 2015-12-02 10:13:39 +01:00
Mario Melara
d7fdb8e015 Got rid of hard coded strings for adding default 2015-12-01 11:57:54 -08:00
Mario Melara
58f2b39bc8 Changed default to CPU_TARGET env var. Helps deal with target differences between cori and edison 2015-12-01 11:57:17 -08:00
Mario Melara
89fbe4fdfa Changed add_target to include variables rather than hard-coded strings 2015-12-01 11:55:38 -08:00
Massimiliano Culpo
b85dccca92 resources : added error handling for destination keyword on resource directive 2015-12-01 15:12:26 +01:00
Massimiliano Culpo
d3d9b5401b resources : changed name of stage folder 2015-12-01 13:26:44 +01:00
Massimiliano Culpo
a075d581ef resource : fetch strategy constructed from kwargs instead or hardcoded URLFetchStrategy 2015-12-01 12:56:46 +01:00
Todd Gamblin
dfcf567de0 Add a cleaned up repo command. 2015-11-28 19:00:24 -08:00
Todd Gamblin
73ef06018e Integrate namespace attribute into spec, spec DAG, spec YAML. 2015-11-28 16:26:23 -08:00
Todd Gamblin
7383bd393e Fixed bug #42: problem with satisfies() for virtual dependencies. 
- _cross_provider_maps() had suffered some bit rot (map returned was
  ill-formed but still worked for cases with one vdep)

- ProviderIndex.satisfies() was only checking whether the result map
  was non-empty.  It should check whether all common vdeps are *in*
  the result map, as that indicates there is *some* way to satisfy
  *all* of them.  We were checking whether there was some way to
  satisfy *any one* of them, which is wrong.

- Above would cause a problem when there is more than one vdep provider.

- Added test that covers this case.

- Added `constrained()` method to Spec. Analogous to `normalized()`:
  `constrain():constrained() :: normalize():normalized()`
 2015-11-27 23:06:18 -08:00
Todd Gamblin
763d850a0e Add tests for importing packages directly. 
Added test for, e.g.:

    import spack.pkg.builtin.mock.mpich
    import spack.pkg.builtin.mock.mpich as mpich
    from spack.pkg.builtin.mock.mpich import Mpich

Among others.  These ensure that direct package imports work so that
packages can be extended.
 2015-11-26 14:23:12 -08:00
Todd Gamblin
89d5127900 New, cleaner package repository structure. 
Package repositories now look like this:

    top-level-dir/
        repo.yaml
        packages/
            libelf/
                package.py
            mpich/
                package.py
            ...

This leaves room at the top level for additional metadata, source,
per-repo configs, indexes, etc., and it makes it easy to see that
something is a spack repo (just look for repo.yaml and packages).
 2015-11-26 14:19:27 -08:00
Massimiliano Culpo
1fe626ec7c resource directive : sketch of implementation + clang / llvm use case 2015-11-26 17:53:33 +01:00
Peter Scheibel
fc96f62794 Updated documentation/naming in tally_plugin to reflect that the count of the 
total number of tests run excludes skipped tests
 2015-11-25 18:08:17 -08:00
Peter Scheibel
d50a18d9eb XML output for unit tests is now enabled with an option (disabled by default) 2015-11-25 17:10:45 -08:00
Peter Scheibel
60f7756626 Executable.__call__ original semantics were to avoid redirecting process output 
to the output stream if return_output was set. This branch undid that and this
commit restores those semantics.
 2015-11-25 12:28:43 -08:00
Todd Gamblin
04f032d6e3 Rename spack.db -> spack.repo 
Making distinction between install database and package repositories clearer.
 2015-11-25 10:01:44 -08:00
Todd Gamblin
e6d232bfef Rename packages.py to repository.py, PackageFinder to RepoPath. 2015-11-25 09:58:10 -08:00
Peter Scheibel
18dea24df8 Use the xunit nose plugin to generate JUnit XML test results from Spack's unit 
tests.
 2015-11-24 19:08:37 -08:00
Peter Scheibel
0adf93853d Update log_output to handle cases where sys.stdout/stderr streams do not have 
an associated file descriptor (e.g. holds for nose tests where sys.stdout is
assigned to a StringIO object)
 2015-11-24 17:58:17 -08:00
Peter Scheibel
5081ba6802 It appears the same test object was returned multiple times for different 
unit tests, so tracking tests with sets wouldn't work unless I extracted the
details relevant to the particular test. For now a simple count will work so
using a set was unnecessary anyways.
 2015-11-24 10:45:07 -08:00
Peter Scheibel
70049185a5 Activation of Tally plugin to count tests. It doesn't appear to be actually 
counting the individual unit tests correctly so I need to chase that down.
 2015-11-24 10:39:42 -08:00
Peter Scheibel
099fa1df34 Use nose to run unit tests. 
1. Adding a plugin to keep track of the total number of tests run as well as the
number of tests with failures/errors.
2. Some nose plugins (including xunit which will be added in a future commit)
assign stdout to a stream object that does not have a .fileno attribute.
spack.util.executable.Executable now avoids passing stdout to subprocess (and
always uses subprocess.PIPE)

TODO:
1. Still need to figure out how to activate the plugin (as of now it is
being ignored by nose). Newer versions of nose appear to make this simpler
(e.g. the "addplugins" argument to nose.run)
2. Need to include new version of nose in order to use xunit
 2015-11-23 18:59:48 -08:00
Todd Gamblin
cf3d236b9f Merge branch 'scheibelp-features/externaldeps' into develop 2015-11-23 17:50:49 -08:00
Todd Gamblin
1447fd0a12 Merge pull request #160 from SteVwonder/stevwonder/develop 
Fixed -l flag for 'spack extensions'
 2015-11-23 15:50:18 -08:00
Todd Gamblin
8c06b92225 Working PackageFinder / Repo 2015-11-22 20:28:59 -08:00
Tom Scogland
5e93dd6592 modified warning to reference spack clean 
clean --dist has been removed, command fixed to something that works.
 2015-11-20 11:49:46 -08:00
Mario Melara
fceb5a75b0 Adding new files to compilers 2015-11-13 11:53:38 -08:00
Mario Melara
bfd05d3d27 Changed name of file and class to craype to avoid spack freaking out about versions 2015-11-13 11:48:49 -08:00
Mario Melara
72fa3c0492 Added craype support 2015-11-13 11:48:15 -08:00
Mario Melara
9458f7c7d0 Got rid of my old method of finding in LOADEDMODULES 2015-11-13 11:47:36 -08:00
Mario Melara
a5ba69d68d Added a _cmp_key for the architecture class 2015-11-13 11:46:13 -08:00
Todd Gamblin
38fdd063d9 Fix and move NamespaceTrie to spack.util.naming 
- fix up routines in namespace trie.
- trie can now hold intermediate elements.
- trie now has a test case.
 2015-11-12 15:17:39 -08:00
Todd Gamblin
72c9604bcb Small fix to prevent this test from interfering with others. 2015-11-12 15:17:09 -08:00
Todd Gamblin
55662eca69 Merge branch 'develop' into mplegendre-multi_pkgsrc_roots 
Conflicts:
	lib/spack/spack/__init__.py
	lib/spack/spack/directives.py
	lib/spack/spack/packages.py
 2015-11-12 15:16:06 -08:00
Gregory Becker
7c89f9d18c Added the basic ouline of a cray compiler class in lib/spack/spack/compilers/cray.py 2015-11-12 14:31:41 -08:00
Gregory Becker
e78b8c16be used key_comparator decorator from util.lang to compare targets. Fixes find bug 2015-11-12 13:27:10 -08:00
Stephen Herbein
9c30e0210b Fixed -l flag for 'spack extensions' 2015-11-12 08:15:38 -08:00
Peter Scheibel
6d7b26d4e0 Insert lib/spack/external into sys.path. This avoids cases where the system 
python install and lib/spack/external have the same library installed. This
requires modifying the names of some modules in lib/spack/external in cases
where both the system python and backported features of future python versions
(i.e. after 2.6) are used (previously distinguished by "from external import X"
and "import X").
 2015-11-11 18:04:22 -08:00
Gregory Becker
eb2c083159 Fixed the to_dict from_dict for targets on cray. First version to build/find properly on Cray 2015-11-11 17:29:47 -08:00
Gregory Becker
185f40eb8b fixed my git problems 2015-11-11 16:33:22 -08:00
Gregory Becker
3067705c10 made a to_dict for targets. Also a from_dict for sanity 2015-11-11 16:16:47 -08:00
Gregory Becker
8a13d344a8 bug fix in spec.py 2015-11-11 15:07:57 -08:00
Gregory Becker
271a839957 First possibly working version of the crayport. Not sufficiently tested at all. 2015-11-11 14:22:07 -08:00
Gregory Becker
95a34628a3 Add modules to compilers. Changed compiler to take paths as a list. Changed compiler_for_spec to be aware of different compiler stratigies 2015-11-11 11:32:18 -08:00
Gregory Becker
7e6fc79eb2 Merge branch 'features/spackathon' of github.com:NERSC/spack into crayport 
Conflicts:
	lib/spack/spack/compiler.py
 2015-11-11 10:35:59 -08:00
Gregory Becker
5347f460b4 adding module find to find command 2015-11-11 10:31:37 -08:00
Gregory Becker
cd69681ae5 merged in work from other computer and starting to track down bugs 2015-11-11 10:09:03 -08:00
Todd Gamblin
5417a514e9 Eliminated two bugs found by spack test and rewrote the parser to be more sane 2015-11-10 18:44:01 -08:00
Gregory Becker
5e75a5c81c Fixed bug that spack.db.exists() returned True for anonymous specs 2015-11-10 15:45:22 -08:00
Gregory Becker
6f339939c4 Removed "any-pkg-name" and replaced it with empty string. Also changed cflag concretizer to concretize each flag individually, allowing us to have unconcretized FlagMap objects for find and uninstall. Now empty flags in find match any, whereas specifying +cflags=\'\' matches only those with empty strings for flags 2015-11-10 15:45:22 -08:00
Gregory Becker
6fa0bb991a Removed cflags from default format string and made them an option within the compiler string. Added -f option to find command; with -f, find prints flags 2015-11-10 15:45:22 -08:00
Gregory Becker
5a9394c65f added default compilers into spec and fixed constrain/concretize bug 2015-11-10 15:45:22 -08:00
Gregory Becker
cb5bc242db Changed flag default to "". Updated printing and other logic to match. Seems to have solved error in normalize. 2015-11-10 15:45:22 -08:00
Gregory Becker
2d77173dfa partial commit of cflags for debugging 2015-11-10 15:45:22 -08:00
Gregory Becker
42b5b7d2dd Commit of compiler flags addition: 
Flags are passed from the command line all the way through
build environments to environment variables.
      Flags are specified using +name=value and values are quoted
using escaped quotes when necessary.

Future work includes using the flags in the compiler wrapper script
and hopefully updating the parser for a gentler user experience of
the spec language.
 2015-11-10 15:45:22 -08:00
Gregory Becker
db1b21b9aa reclaimed the = sign. Architectures now specified by +arch= instead. Decided to prepend flag names with + for clarity in spec names and ease of parsing. Also generalized variants, although there is not yet a way to specify a generalized (name=value) variant. 2015-11-10 15:45:22 -08:00
Gregory Becker
7989a7f903 Headless specs and /hash spec specification 2015-11-10 15:42:10 -08:00
Gregory Becker
f9c8c4d216 partial commit to merge database 2015-11-10 15:40:00 -08:00
Gregory Becker
4ed22ad932 partial commit of cflags work 2015-11-10 15:39:27 -08:00
Gregory Becker
08729315c6 Added bgq architecture subclass: may require additional functionality to support 2015-11-05 09:21:56 -08:00
Todd Gamblin
0d993947ee Fix SPACK-93, SPACK-94, GitHub #150 
- `remove_prefix` was modified to remove from the DB, but the package
  may not have been added to the DB yet when `remove_prefix` is called
  from `cleanup`.

- Made `remove_prefix` a pure utility function (it just removes the prefix)

- Added `installed_db.remove()` call only after the `remove_prefix` in
  `uninstall`.
 2015-11-04 16:44:33 -08:00
Mario Melara
b61d554dc8 Fixed architecture.py file so it doesn't have the weird merge changes i.e <<<HEAD etc. Also added target method of recognizing it's own architecture 2015-11-04 13:28:12 -08:00
Mario Melara
2bc73b4a27 Merge branch 'features/spackathon' of https://github.com/NERSC/spack into features/spackathon 2015-11-04 13:21:33 -08:00
Gregory Becker
3a73ae1683 Fixed the previous commit 2015-11-04 13:12:11 -08:00
Mario Melara
9bf8e8573c generic linux architecture subclass 2015-11-04 13:08:48 -08:00
Mario Melara
e3a02ea5c7 Merge branch 'features/spackathon' of https://github.com/NERSC/spack into features/spackathon 
Conflicts:
	lib/spack/spack/architecture.py
 2015-11-04 13:06:56 -08:00
Gregory Becker
35532d6b0a Changed cray architecture subclass to add proper targets for front at back end nodes 2015-11-04 13:00:35 -08:00
Mario Melara
37260962e5 changed some potential syntax errors and added a way for target to recognize class 2015-11-04 12:57:29 -08:00
Gregory Becker
5ac974c9b2 Enforced that the architecture subclass cannot add a target that shares a name with a target alias 2015-11-04 12:50:22 -08:00
Todd Gamblin
339da1da3d Make architecture reflect OS *and* machine. Use Python's platform module. 2015-11-04 07:46:17 -08:00
Mario Melara
058e72d29c Added default target and also front end and back end targets 2015-11-02 11:08:55 -08:00
Mario Melara
eb2cf1698f Fixed some issues with naming 2015-11-02 11:08:08 -08:00
Mario Melara
9a91da9ccd Added arch_path to list of modules path 2015-10-30 15:59:28 -07:00
Mario Melara
e39586c81d Reverted back all architecture way of finding modules 2015-10-30 15:58:49 -07:00
Mario Melara
2d87bb92ed Changed front-end and back-end to front_end and back_end to avoid error 2015-10-30 15:58:20 -07:00
Mario Melara
db0695e46a architectures folder where the Architecture subclasses reside 2015-10-30 15:57:00 -07:00
Gregory Becker
6e56070386 improved aliasing in target method in architecture.py 2015-10-30 15:15:36 -07:00
Gregory Becker
d177184777 added target method to architecture.py and minor cleanup 2015-10-30 15:12:29 -07:00
Mario Melara
0a004e0fce Merge branch 'features/spackathon' of https://github.com/NERSC/spack into features/spackathon 
Merge Gregory Becker's commits with my own architecture commits
 2015-10-30 14:53:49 -07:00
Mario Melara
7ab921ff02 Changed architecture class and added class Target 2015-10-30 14:46:26 -07:00
Gregory Becker
382d8478bf prototype of new architecture concretization saved as new_concretize_architecture in concretize.py 2015-10-30 10:23:33 -07:00
Gregory Becker
09597fe8dc updated the executible to return stderr when specified. Added load_module to build_environment.py, loads target 2015-10-30 09:44:28 -07:00
Massimiliano Culpo
6db2a58008 Fixed typo : write_lock() -> write_transaction() 2015-10-30 07:42:58 +01:00
Todd Gamblin
a1c42c2753 Merge Greg Becker's build database support into develop. 2015-10-29 02:22:20 -07:00
Todd Gamblin
671faa4b99 Merge pull request #124 from scheibelp/features/testinstall-cmd 
Features/testinstall cmd
 2015-10-29 00:16:52 -07:00
Todd Gamblin
ed0c80e1cb Merge pull request #145 from markcmiller86/v-char-bugfix 
generalize one of the cases to handle many more kinds of formatting o…
 2015-10-29 00:02:01 -07:00
Todd Gamblin
fec6674597 Merge pull request #139 from mathstuf/use-uname-for-arch 
architecture: use uname if available
 2015-10-29 00:01:30 -07:00
miller86
21e9d5c5c3 generalize one of the cases to handle many more kinds of formatting options 2015-10-27 17:05:27 -07:00
Todd Gamblin
a58ae0c5d0 Build database working with simple transaction support; all tests passing. 2015-10-27 16:36:44 -07:00
Todd Gamblin
bf8479bec6 Fix stupid lock bug. 
- Code simplification ignored case where exception was raised.
- If LockError was raised, read and write counts were incremented erroneously.
- updated lock test.
 2015-10-27 16:34:26 -07:00
Peter Scheibel
50d0a2643b Not all package stages have an archive file (e.g. source code repos) but all of 
them do have a source_path: use this instead to check whether the package
resources were successfully retrieved.
 2015-10-27 13:34:46 -07:00
Todd Gamblin
af7b96c14a Lock acquires return True/False depending on whether they got POSIX lock. 2015-10-27 00:35:06 -07:00
Ben Boeckel
6c9b10f73d architecture: remove custom mac_type method 2015-10-26 18:55:10 -04:00
Ben Boeckel
17a58ee0a9 architecture: use uname if available 2015-10-26 18:54:04 -04:00
Peter Scheibel
3b554c709b Fetch errors were also terminating runs of test-install with system exit, so 
stage.fetch() was updated to raise a FetchError instead of calling tty.die().
Output is the same for spack install in case of a fetch error.
 2015-10-26 15:26:08 -07:00
Ben Boeckel
9d90cb6962 python: use the setdefault method on dict 
It allows more concise code and skips some key lookups.
 2015-10-26 17:38:19 -04:00
Peter Scheibel
9576860f8c Making SpackError reference consistent. 2015-10-26 14:27:44 -07:00
Peter Scheibel
6a16040462 Automatically create a 'test-output' directory in the current directory if no 
output path is specified. Test output files are placed in this directory.
Furthermore the filenames now have the prefix "test" (but otherwise are the
string representation of the spec ID as before).
 2015-10-26 11:58:52 -07:00
Todd Gamblin
ead8ac58c6 Working Lock class, now uses POSIX fcntl locks, extensive unit test. 
- llnl.util.lock now uses fcntl.lockf instead of flock
  - purported to have more NFS compatibility.

- Added an extensive test case for locks.
  - tests acquiring, releasing, upgrading, timeouts, shared, & exclusive cases.
 2015-10-24 19:57:43 -07:00
Todd Gamblin
908a93a470 Add a multiprocess Barrier class to use for testing parallel code. 2015-10-24 19:54:52 -07:00
Peter Scheibel
cc0ee3dc29 The HTML number conversion regex operating against a byte string will only 
convert individual bytes, so therefore incorrectly converts utf-8 encoded
characters. Decoding byte strings to unicode objects results in correct HTML
number encodings.
 2015-10-23 20:56:06 -07:00
Peter Scheibel
d76c923623 1. Rename CommandError -> InstallError 
2. InstallError now subclasses SpackError vs. StandardError (so it is now
handled by the spack shell script)
 2015-10-23 16:18:06 -07:00
Peter Scheibel
ea872f8098 1. Added CommandError exception to build_environment 
2. The parent of a failed child process in build_environment.fork no longer
calls sys.exit - instead it raises a CommandError (from [1])
3. test-install command now attempts to install all packages even if one fails
 2015-10-22 17:44:16 -07:00
Peter Scheibel
246423b4b4 Generate test results (designated as skipped) for parents of failed dependencies 2015-10-22 16:00:03 -07:00
Mario Melara
38508c5a3f Created a control flow logic that will loop through the strategies and find compilers using that. TODO: Need to find a way to locate their executables 2015-10-22 12:02:26 -07:00
Todd Gamblin
b6833f08df Merge pull request #129 from mathstuf/separate-prefix 
spack: split spack_root from prefix
 2015-10-21 16:04:36 -04:00
Mario Melara
a89abb435f Changed structure of class, add compiler strategy is a method and can create a dict 2015-10-21 11:32:59 -07:00
Mario Melara
9b387e7682 Added strategy method in init 2015-10-21 11:09:05 -07:00
Gregory Becker
51b69ef00b initial fetch on crayport 2015-10-21 09:27:57 -07:00
Mario Melara
c31da9bc8f Made sure architecture works with yaml file 2015-10-20 14:10:54 -07:00
Mario Melara
ca3cc5b23e Refactored architecture class. Now it will automagically create a dict upon instantiation. 2015-10-20 13:37:06 -07:00
Mario Melara
3ba2842b53 Got Architecture class working the way i wanted to. Next to write tests 2015-10-20 13:33:21 -07:00
Todd Gamblin
3c788147ca Add Spack logo. 2015-10-18 19:14:40 -07:00
Todd Gamblin
7598612b86 Better info variant output. 2015-10-17 17:34:39 -07:00
Peter Scheibel
39f0f000f8 Created unit test for core logic in test-install command. 2015-10-15 22:02:14 -07:00
Peter Scheibel
6cd976d036 Better description for test-install command 2015-10-15 20:13:08 -07:00
Peter Scheibel
49b91235bb Minor edit for clarity (generate output for single top level spec vs. iterating 
through collection of size 1)
 2015-10-15 19:59:57 -07:00
Peter Scheibel
82ed1bc343 Originally I enforced specifying 1 top-level package with the test-install 
command by having it consume exactly 1 positional argument (i.e. by removing
"nargs=argparse.REMAINDER") but this does not work when configuring dependencies
of a top-level package (which show up as additional positional args). Instead
now there is an explicit check to ensure there is only 1 top-level package.
 2015-10-15 19:38:47 -07:00
Peter Scheibel
e451421db3 1. Specifying the output file path for test-install is now an option (vs. an 
argument). The default path is [package id].xml in the CWD where test-install
is called from.

2. Fixed a bug with package.build_log_path (which was added in this branch).

3. keep_stage for package.do_install is now set. This allows uninstalling and
reinstalling packages without (re) downloading them.
 2015-10-15 19:22:36 -07:00
Mario Melara
fec197ccac Fixed the output of sys_type(), might need to add back the error handling part 2015-10-15 15:25:13 -07:00
Mario Melara
ccdf105759 Commented out a long list of tests to just include my arch test 2015-10-15 12:48:12 -07:00
Mario Melara
d328f4c3b6 Test suite for architecture class and functions 2015-10-15 12:47:26 -07:00
Mario Melara
29e03ac851 Added __eq__ testing method. Created tests for it in test/ folder 2015-10-15 12:46:44 -07:00
Peter Scheibel
4997f0fe57 Move logic for tracking the build log into package.py (since that is what is 
managing the build log) and expose as package.build_log_path.
 2015-10-15 12:44:02 -07:00
Peter Scheibel
c985ad7644 Update test failure output: don't include the entire build log, just lines which 
mention errors (or if no such lines can be found, output the last 10 lines from
the log).
 2015-10-15 12:23:56 -07:00
Peter Scheibel
b9bf0b942c Use spec.traverse vs. recursive function. 
Also even though I calculated which installs are new (e.g. vs. packages that
have already been installed by a previous command) I forgot to make use of that
in create_test_output (so I was always generating test output even if a package
had been installed before running the test-install command).

Note to avoid confusion: the 'handled' variable (removed in this commit) did not
serve the same purpose as 'newInstalls': it was originally required because the
recursive approach would visit the same dependency twice if more than one
package depended on it.
 2015-10-15 11:52:08 -07:00
Peter Scheibel
f2b4341ad6 Always run with verbose output (so eliminate it as an option). Also remove other 
commented options.
 2015-10-15 10:45:03 -07:00
Peter Scheibel
11861fb8d7 Changing name of file requires changing function name to be invoked as a command 2015-10-15 10:35:42 -07:00
Peter Scheibel
e3d703b80f Change name of file to conform to conventions. 2015-10-15 10:33:39 -07:00
Peter Scheibel
2ae7839b66 Edit function names to conform to naming conventions. 2015-10-15 10:26:13 -07:00
Peter Scheibel
0d66362cee Only install 1 top-level package with testinstall. Otherwise if multiple 
packages are specified and a prior one fails, it will prevent any of the others
from succeeding (and generating test output) even if they don't share
dependencies.
 2015-10-15 10:17:08 -07:00
Ben Boeckel
3ce85b2270 spack: split spack_root from prefix 
A foundation for allowing runtime configuring of the prefix.
 2015-10-15 09:27:05 -04:00
Mario Melara
4f21344e87 Started created the Architecture class for Spack to use 2015-10-14 19:41:07 -07:00
Peter Scheibel
71dcf8833c Make sure to generate output for dependencies as if they were separate tests: 
the original intent was to generate output as if each package was a unit test,
but I noticed that I was only generating test output for top-level packages.
 2015-10-13 19:02:41 -07:00
Peter Scheibel
1ce6d8b627 Add spec YAML format to test output. 2015-10-13 10:41:47 -07:00
Todd Gamblin
d16095c856 Add forgotten file from previous commit. 2015-10-13 10:35:19 -07:00
Peter Scheibel
9f56d9c807 Don't create test output for any package that was already installed. 2015-10-12 20:56:03 -07:00
Peter Scheibel
6cd22e5786 1. Added Junit XML format 
2. Specify output to a file vs. a directory
3. Use [1] and [2] to write an XML file tracking success of package installs in
Junit XML format
 2015-10-12 20:49:23 -07:00
Peter Scheibel
b7249d66b3 Adding command testinstall. See "spack testinstall -h" for documentation. 
Still need to add output formatting (in a commonly parse-able format like Junit
or TAP). May want to adjust how the build log is accessed in case of a build
failure.
 2015-10-12 19:18:31 -07:00
Todd Gamblin
2c81875019 Fix bug in colify color handling. 2015-10-12 14:44:41 -07:00
Mario Melara
b6d2a12ceb Started changing the find in modules method written by Todd 2015-10-07 15:57:29 -07:00
Mario Melara
06fe879745 Merge branch 'features/crayproto' of https://github.com/scalability-llnl/spack into develop 2015-10-07 14:55:05 -07:00
Matthew LeGendre
fac4428766 Documentation for external packages. 2015-10-05 14:04:33 -07:00
Matthew LeGendre
18f0b24a7f Add tests for spack external dependencies, plus fixes for issues found by those tests. 2015-10-05 11:37:36 -07:00
Matthew LeGendre
e4d2ba30b5 Fix failure in spack.test.config.ConfigTest from incorrect compiler config merging 2015-10-05 11:37:36 -07:00
Matthew LeGendre
650c9d4e36 Allow spack to build against external non-spack-installed packages. 2015-10-05 11:37:36 -07:00
Matthew LeGendre
53d70fff01 Fix type error with YAML config when merging lists from different configs. 2015-10-05 11:36:06 -07:00
Matthew LeGendre
53cde110b1 Update Spack mirror command to match docs 2015-10-05 11:36:06 -07:00
Matthew LeGendre
987cd9e78f Update docs for YAML configuration files and preferred concretization 2015-10-05 11:36:06 -07:00
Matthew LeGendre
ee68a76a19 Bug fixes from testing spack preferred packages 2015-10-05 11:36:06 -07:00
Matthew LeGendre
8d7b7e5d5d Use preferred package rules when concretize'ing specs 2015-10-05 11:36:06 -07:00
Matthew LeGendre
b5c597b318 Allow specs to be sorted based on preferred packages, versions, compilers, variants and dependencies. 2015-10-05 11:36:05 -07:00
Matthew LeGendre
59f89dd3be Allow long names in format string variables 2015-10-05 11:36:05 -07:00
karenyyng
f4e72f33c8 added dependencies for py-h5py 2015-10-05 08:24:33 -07:00
Todd Gamblin
d00314c621 Protptype cray compiler detection and support 2015-10-05 01:30:25 -07:00
karenyyng
e9f7d033ff make sure submodule is added in the correct location 2015-10-03 19:13:08 -07:00
Gregory Becker
5fda7daf57 an ordered database test 2015-09-27 17:54:24 -07:00
Todd Gamblin
8818f4ac5e Remove enabled variants from install prefix. 
- these make the prefix too long in many cases.
- users can figure out which install is which by querying.
 2015-09-27 17:01:35 -07:00
Todd Gamblin
adbd393c39 Remove special characters (@, %, +, ~, etc) from stage name 2015-09-27 17:01:35 -07:00
Todd Gamblin
d0e22b2240 Add ref counting to database. This does not handle removal properly yet. 2015-09-18 11:40:05 -07:00
Todd Gamblin
fb73979345 Allow custom timeout for database locking. 2015-09-17 16:09:59 -07:00
Todd Gamblin
e17ad6a684 Simplify lock context managers. 2015-09-17 01:05:19 -07:00
Todd Gamblin
6dff42be09 WIP for Matt's branch 2015-09-17 00:21:33 -07:00
Todd Gamblin
ccf311c9c6 Several changes to DB implementation. 
1. Database stores a file version, so we can add to it in the future.
2. Database indexed by hashes and not numerical indexes.
3. Specs built by database have consistent hashes and it's checked.
4. minor naming and whitespace changes.
 2015-09-17 00:16:12 -07:00