hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
2303 commits 3 branches 52 tags 188 MiB
Commit graph

1184 commits

Author SHA1 Message Date
Mayeul d'Avezac
7430f9142f Can install espresso on OS/X 
Espresso uses unix utility `find dir -name \*.x` to determine the executable to
install. On OS/X, it also finds a bunch of debug symbols associated
with the exectuble. These files have the same name, but are in a
different directory. So the install process is done by hand in the
package.py file, for OS/X.
 2016-03-31 10:16:40 +01:00
Mayeul d'Avezac
397e0d1368 Fixes #454 in a simpler way than 34a8f0c 
Rather than mess with the environment, have espresso install into the
right directory (prefix/bin).
 2016-03-31 10:12:20 +01:00
Todd Gamblin
360994b638 Merge branch 'davydden-dealii' into develop 
- Modified arpack-ng to call libtoolize.
 2016-03-30 23:47:21 -07:00
Todd Gamblin
44b8947445 arpack-ng needs an extra libtoolize to build. 2016-03-30 23:33:57 -07:00
Kelly (KT) Thompson
a88c15e101 + libdrm depends_on libpciaccess. Use spack provided libpciaccess. 2016-03-30 21:18:04 -06:00
Kelly (KT) Thompson
a364ab0d0f libpng depends on zlib. 2016-03-30 17:12:32 -06:00
Todd Gamblin
ef5c973c93 Merge pull request #688 from davydden/doxygen_fix 
doxygen: add missing dependencies
 2016-03-30 15:54:02 -07:00
Todd Gamblin
35322eccc1 Merge pull request #601 from KineticTheory/pkg-numdiff 
Provide new package numdiff
 2016-03-30 15:22:56 -07:00
Todd Gamblin
892b8f155f Merge branch 'dealii' of git://github.com/davydden/spack into davydden-dealii 2016-03-30 15:09:29 -07:00
Todd Gamblin
228130ddc8 Merge pull request #693 from mathstuf/osx-ninja 
ninja: fix installation on OS X
 2016-03-30 14:59:08 -07:00
Todd Gamblin
b4580eb04c Merge pull request #604 from KineticTheory/pkg-graphviz 
Pkg graphviz
 2016-03-30 14:51:15 -07:00
Kelly (KT) Thompson
2ad5d2ea2a + For darwin, add a dependency on gettext. This change was recommended in the discussion for PR#601. 2016-03-30 15:40:04 -06:00
Kelly (KT) Thompson
be2862ef4e Merge remote-tracking branch 'upstream/develop' into pkg-numdiff 2016-03-30 15:35:46 -06:00
Ben Boeckel
f1a0619821 mpich: disable fortran without a fortran compiler 2016-03-30 17:19:29 -04:00
Kelly (KT) Thompson
4ab362ae17 + Fix variant description. 2016-03-30 14:27:23 -06:00
Kelly (KT) Thompson
d1a3adfcf0 + Make --disable-perl the default configure option. 2016-03-30 14:25:44 -06:00
Ben Boeckel
dbb25bfeed ninja: fix installation on OS X 
The cp -t flag is a GNU-ism. Instead, add a trailing slash to bindir to
ensure that it is not treated as a file.
 2016-03-30 16:17:52 -04:00
Kelly (KT) Thompson
8da62b310e Merge remote-tracking branch 'upstream/develop' into pkg-graphviz 2016-03-30 13:59:10 -06:00
Denis Davydov
5506e89aa9 rename variant doxygen to doc 2016-03-30 21:41:23 +02:00
Todd Gamblin
4bc6ace201 Merge pull request #690 from glennpj/py_updates 
Get py-pandas working plus some python package updates
 2016-03-30 12:04:30 -07:00
Todd Gamblin
213e9746ad Merge pull request #689 from KineticTheory/pkg-subversion 
Provide subversion (along with apr and apr-util)
 2016-03-30 12:02:59 -07:00
Todd Gamblin
a65519def0 Merge pull request #691 from davydden/petsc_remove_qunused 
petsc: remove no longer needed -Qunused-arguments hack
 2016-03-30 12:02:23 -07:00
Todd Gamblin
0ceb7c411b Merge branch 'davydden-trilinos_extra' into develop 2016-03-30 11:41:43 -07:00
Todd Gamblin
01657e6991 Make suite-sparse use spack compilers. 2016-03-30 11:41:25 -07:00
Denis Davydov
b909da759d petsc: remove no longer needed -Qunused-arguments hack 2016-03-30 19:26:03 +02:00
Adam J. Stewart
9519f3d988 Fix MPI-CUDA bug 2016-03-30 11:46:58 -05:00
Glenn Johnson
8ae84cfaba This commit updates pandas and fixes dependencies. 
Added version 0.18.0.
Added 'bin/f2py' to ignore so that activation works.

Removed unneccessary dependencies on
- libdrm
- libpciaccess
- llvm
- mesa

Added recommended dependencies from the pandas project site.
http://pandas.pydata.org/pandas-docs/stable/install.html
- py-numexpr
- py-bottleneck

The py-bottleneck is a new package that is also in this branch.

Removed optional dependencies
- py-scipy
- py-matplotlib

While those are most likely desired to be in the same python stack as
pandas they are not required by pandas.
 2016-03-30 11:21:38 -05:00
Glenn Johnson
78be85c84f Added version 1.11.0. 2016-03-30 11:21:17 -05:00
Glenn Johnson
e7ae983b41 Added version 2.5. 
Added 'bin/f2py' to ignore so that activation works.
 2016-03-30 11:20:27 -05:00
Glenn Johnson
f3b353f5f9 Add 'bin/f2py' to ignore so activation works. 2016-03-30 11:17:24 -05:00
Glenn Johnson
8948cb100b Add version 1.3.7. 2016-03-30 11:16:35 -05:00
Glenn Johnson
17075736a0 Add version 2.5.2. 2016-03-30 11:16:11 -05:00
Glenn Johnson
42729d9cce Added version 2016.3. 2016-03-30 11:10:32 -05:00
Glenn Johnson
9153e03e5c Added version 20.5. 2016-03-30 11:09:47 -05:00
Glenn Johnson
3b19cc303f Added version 1.10.0. 2016-03-30 11:08:28 -05:00
Glenn Johnson
5c95977dcc Added version 15.0.1 2016-03-30 11:06:04 -05:00
Glenn Johnson
bc309e42d8 New package, py-bottleneck. 2016-03-30 11:00:18 -05:00
Kelly (KT) Thompson
a7ceacb991 + Changes to swig are not needed with this PR. 2016-03-30 09:47:31 -06:00
Kelly (KT) Thompson
5b1ef64e31 + Provide basic instructions for providing subversion w/o additional language bindings. 2016-03-30 09:33:00 -06:00
Kelly (KT) Thompson
f2051f0440 Merge remote-tracking branch 'upstream/develop' into pkg-graphviz 2016-03-30 08:28:53 -06:00
Denis Davydov
2abdd71b41 add dev version and conditionals for tests; remove parmetis 2016-03-30 15:19:29 +02:00
Denis Davydov
9e9f5d01ad doxygen: add missing dependencies 2016-03-30 13:28:33 +02:00
Denis Davydov
bafc6cebe1 doxygen off by default 2016-03-30 12:00:21 +02:00
Denis Davydov
5b6eefbf04 add variants and extra dependencies 2016-03-30 11:30:35 +02:00
Gregory Lee
c017387214 Merge pull request #672 from citibeth/efischer/160327-GEOSPython3 
[WIP] GEOS Python extension did not compile with Python3.
 2016-03-29 20:35:00 -07:00
Gregory L. Lee
81b9148b9e Merge branch 'develop' of https://github.com/llnl/spack into develop 2016-03-29 20:26:22 -07:00
Gregory L. Lee
98bb151d85 updated geos version 2016-03-29 20:25:56 -07:00
Todd Gamblin
e4de235e75 Merge pull request #653 from citibeth/efischer/160325-Cython3Fix 
Added new Cython version; old versions don't work with Python3.
 2016-03-29 17:13:37 -07:00
Todd Gamblin
f42b1dfcbd Merge branch 'trilinos_extra' of git://github.com/davydden/spack into davydden-trilinos_extra 2016-03-29 17:08:51 -07:00
Kelly (KT) Thompson
c69b9b7b24 Merge remote-tracking branch 'upstream/develop' into pkg-subversion 2016-03-29 17:14:27 -06:00
Kelly (KT) Thompson
a4eff6de3f + New version of cmake (3.5.1). 2016-03-29 17:10:49 -06:00
Todd Gamblin
7f469eadff Merge pull request #684 from davydden/astyle 
astyle@2.04: add new package
 2016-03-29 15:29:14 -07:00
Todd Gamblin
3c8881487f Merge pull request #632 from sixy6e/gdal-tools 
Upload of GDAL, kealib, openjpeg, py-tuiview package builds.
 2016-03-29 15:28:38 -07:00
Elizabeth Fischer
abee9c83b4 Removed googletest FIXME... 2016-03-29 17:26:34 -04:00
Adam J. Stewart
4ddba5f7ed Add CUDA and HOOMD-blue packages 2016-03-29 14:47:16 -05:00
Todd Gamblin
a06f682e49 Merge pull request #671 from citibeth/efischer/160327-RemoveRedundantLibXML2 
Removed redundant package py-libxml2.  Use libxml2 instead.
 2016-03-29 12:38:07 -07:00
Patrick Gartung
d96ea5ba00 add modules package and have setup script find it if built 2016-03-29 12:20:11 -05:00
Denis Davydov
ad402ff85b astyle@2.04: add new package 2016-03-29 18:43:44 +02:00
Todd Gamblin
e0fdb34104 Merge branch 'eschnett-eschnett/boost-mpi-osx' into develop 2016-03-29 05:15:40 -07:00
Todd Gamblin
62ae830e49 Merge branch 'eschnett/boost-mpi-osx' of git://github.com/eschnett/spack into eschnett-eschnett/boost-mpi-osx 2016-03-29 05:14:41 -07:00
Todd Gamblin
b3a384e1d8 Merge pull request #680 from davydden/hypre_muparser_fixes 
minor fixes to hypre and muparser on Linux
 2016-03-29 05:11:50 -07:00
Todd Gamblin
275943d8df Merge branch 'eschnett-eschnett/gcc-osx-2' into develop 2016-03-29 04:16:53 -07:00
Patrick Gartung
ccc1b23bea this allows gcc4.9.3 to build on OSX10 2016-03-29 04:15:07 -07:00
Denis Davydov
63c3feb79e minor fixes to hypre and muparser on Linux 2016-03-29 10:05:08 +02:00
Todd Gamblin
7e7461e8fb Merge pull request #626 from davydden/mumps_shared_tests 
add shared variant to mumps (needed for Trilinos) plus tests
 2016-03-29 00:33:30 -07:00
Denis Davydov
7753d823cb add a comment on static mumps 2016-03-29 09:27:55 +02:00
Denis Davydov
f9bcce6a68 turn off python by default 2016-03-29 09:19:24 +02:00
Kelly (KT) Thompson
197f07306b Merge remote-tracking branch 'upstream/develop' into pkg-subversion 2016-03-28 19:56:07 -06:00
Kelly (KT) Thompson
40cea0110f Merge remote-tracking branch 'upstream/develop' into pkg-graphviz 2016-03-28 19:53:22 -06:00
Todd Gamblin
02879d94ff Merge pull request #673 from davydden/netcdf_cxx 
new package: netcdf-cxx
 2016-03-28 18:03:36 -07:00
Denis Davydov
09e77812b6 fix installation of superlu_dist headers and add it as a dependency to petsc; add a variant to hypre to disable internal superlu 2016-03-29 00:21:32 +02:00
Denis Davydov
4e87cf9d74 fix extra comma 2016-03-28 18:00:34 +02:00
Denis Davydov
207215980b make hypre and hdf5 be ON/OFF 2016-03-28 17:54:27 +02:00
Denis Davydov
dd60cc326c adopt modifed superlu and hypre 2016-03-28 17:52:22 +02:00
Denis Davydov
5eefca43e7 petsc: extend variants by mumps, complex and debug 2016-03-28 14:35:01 +02:00
Denis Davydov
0da545ecac tell amesos that we use mumps 5 2016-03-28 13:16:08 +02:00
Denis Davydov
e00cab75bd more elaborated tests/direct solvers 2016-03-28 12:12:55 +02:00
Denis Davydov
97cdd79478 fix netcdf 2016-03-28 10:49:20 +02:00
Denis Davydov
9c894f5935 new package: netcdf-cxx 2016-03-28 10:19:25 +02:00
Todd Gamblin
8b45d6f84f Merge pull request #658 from davydden/metis_parmetis_darwin 
metis/parmetis/oce/boost: correct install_name on Darwin via a global tool
 2016-03-27 16:10:05 -07:00
Elizabeth F
3bd550d6a2 GEOS Python extension did not compile with Python3. 2016-03-27 18:28:51 -04:00
Denis Davydov
7eca1284c8 metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function. 2016-03-28 00:22:25 +02:00
citibeth
ccd155572f Removed redundant package py-libxml2. Use libxml2 instead. 2016-03-27 18:18:54 -04:00
Denis Davydov
fc73e93b50 rework netcdf 2016-03-27 23:47:43 +02:00
Todd Gamblin
9061800b30 Merge branch 'eschnett/gcc-osx-2' of git://github.com/eschnett/spack into eschnett-eschnett/gcc-osx-2 2016-03-27 13:18:23 -07:00
Denis Davydov
20600b8cac add tests and netcdf-cxx4 2016-03-27 21:03:18 +02:00
Todd Gamblin
66bb71534b Better blas/lapack and scipy packages: more robust, added shared variants. 
- py-scipy now builds with netlib-lapack, openblas, and atlas.
- started a convention for passing lib info from blas/lapack implementations.

- Improved netlib-lapack:
  - Also build static libs when `shared` variant is enabled.
  - Enable CBLAS  build
    - needed minor patch to build correctly.

- Added `shared` variant to OpenBLAS.
  - Made OpenBLAS build properly shared and static.
 2016-03-27 11:32:42 -07:00
Denis Davydov
439d3b3ddb mumps: add install_name / soname 2016-03-27 17:38:25 +02:00
citibeth
cc42391e0f Added py-netcdf 2016-03-27 11:06:10 -04:00
Denis Davydov
69ebc8173e use global tool to fix install_name 2016-03-27 16:04:13 +02:00
Denis Davydov
9cff241ad5 fix install name on Darwin 2016-03-27 10:39:09 +02:00
Denis Davydov
a82a587b32 lower requirement on mumps 2016-03-27 06:17:43 +02:00
citibeth
9b130e1d19 Added googletest package. 2016-03-26 20:42:35 -04:00
Elizabeth F
11ca06b104 Added new py-cython version 2016-03-26 20:37:02 -04:00
Denis Davydov
9c391bbda1 minor changes to variants 2016-03-26 20:52:08 +01:00
Denis Davydov
965ce633c3 cleanup variants 2016-03-26 18:51:59 +01:00
Denis Davydov
f603c82e81 qualify Amesos link errors 2016-03-26 18:43:55 +01:00
Elizabeth F
497adc3b42 Added new version; old versions don't work with Python3. 2016-03-25 22:47:37 -04:00
Denis Davydov
c7011d21aa update dependencies. Builds fine on OSX 2016-03-25 22:15:39 +01:00
Todd Gamblin
42ec822379 Merge pull request #633 from davydden/netcdf_curl 
make netcdf link against Spack's curl
 2016-03-25 12:54:53 -07:00