Satish Balay
23bedc276c
plasma: extract plasma changes from xsdk-0.3.0 ( #6280 )
...
* plasma: extract plasma changes from xsdk-0.3.0
* plasma: cleanup per review
- netlib-lapack: add support for spec['lapack:c'].libs, spec['blas:c'].libs
- add getblaslapacklibs() to eliminate duplicate code in edit() and build_targets()
- eliminate string manipulation of ld_flags
- remove gfortran check (will check later)
- remove build() (will check later)
* netlib-lapack: fix tuple per review
* netlib-lapack: use spec[lapack:c,fortran]
2017-11-27 11:38:10 -08:00
Adam Fidel
557309618f
New Package: GAP Benchmark Suite ( #6452 )
2017-11-27 06:50:49 -07:00
Choong Jun Jin
45e1562162
fixed glog compilation for < 0.3.5 ( #6463 )
2017-11-27 06:50:26 -07:00
Massimiliano Culpo
eacaa1551e
r-rcpp: adds new versions, fixes failing download in Travis CI ( #6464 )
2017-11-27 10:15:47 +01:00
Eric
fcf331f176
r-tsne: Create new package ( #6461 )
2017-11-27 09:30:52 +01:00
Eric
0bb789eb23
r-rcpp: fix list_url to install archived versions ( #6462 )
2017-11-27 09:20:49 +01:00
peetsv
09eeb991a2
dialign-tx adding patch for gcc@5.4.0 ( #6413 )
2017-11-26 16:14:18 -07:00
Michael F. Herbst
41eb496021
New Package: Add libcint to spack ( #6456 )
...
* Add libcint to spack
* Clearifying comment
2017-11-25 21:01:30 -07:00
Michael F. Herbst
178381edf9
Implement opencv libs property ( #6457 )
2017-11-25 21:00:18 -07:00
Eric
9b5e3434ad
r-sn: Create new package ( #6433 )
...
* r-sn: Create new package
* r-sn: fix whitespace and depends_on
2017-11-25 12:50:13 -07:00
Axel Huebl
a465bf3bec
pocl: fix link to libtool ( #6440 )
...
libtool is also needed for linking, otherwise downstream
dependencies such as clfft will fail linking against pocl's
libOpenCL.so with errors such as:
```
>> 182 /usr/bin/ld: warning: libltdl.so.7, needed by /usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pocl-0.14-rwo73qzkcxfupndxoz3pcl2s34o5pt6i/lib/libOpenCL.so, not found (try using -rpath or -rpath-link)
>> 183 /usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pocl-0.14-rwo73qzkcxfupndxoz3pcl2s34o5pt6i/lib/libOpenCL.so: undefined reference to `lt_dlinit'
>> 184 /usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pocl-0.14-rwo73qzkcxfupndxoz3pcl2s34o5pt6i/lib/libOpenCL.so: undefined reference to `lt_dlerror'
>> 185 /usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pocl-0.14-rwo73qzkcxfupndxoz3pcl2s34o5pt6i/lib/libOpenCL.so: undefined reference to `lt_dlopen'
>> 186 /usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pocl-0.14-rwo73qzkcxfupndxoz3pcl2s34o5pt6i/lib/libOpenCL.so: undefined reference to `lt_dlsym'
>> 187 collect2: error: ld returned 1 exit status
```
2017-11-25 11:55:08 -07:00
Gregory Lee
1f2867415a
added intel 18.0.1 compilers ( #6381 )
2017-11-25 11:49:02 -07:00
Michael F. Herbst
25d7ef495c
Expand bohrium package ( #6438 )
...
* GCC greater 4.7 required
* Add variant with opencv extmethods
* Fix and export the config path
2017-11-25 11:46:32 -07:00
healther
d7344d2987
add package py-linecache2 ( #6448 )
2017-11-25 11:42:16 -07:00
healther
8c5c46a7a2
add missing dependencies to py-pylint ( #6445 )
2017-11-25 11:41:45 -07:00
healther
835b1ff03d
add missing build dependency to py-execnet ( #6443 )
2017-11-25 11:40:53 -07:00
Axel Huebl
ed685b0262
gearshifft: enable OpenCL ( #6441 )
...
With pocl builds fixed, we can now also use the OpenCL
implementations in gearshifft :)
2017-11-25 11:40:12 -07:00
healther
86e771bdb3
add missing dependency to py-scikit-image ( #6446 )
2017-11-25 11:39:16 -07:00
healther
ca90372f74
add missing dependency to py-unittest2 ( #6447 )
2017-11-25 11:38:42 -07:00
healther
65fd350eb4
add package py-setuptools-scm ( #6449 )
2017-11-25 11:38:10 -07:00
healther
0c7cf0c7a4
add package py-traceback2 ( #6450 )
2017-11-25 11:37:38 -07:00
健美猫
0d91f51a27
Python: add 3.6.3 . ( #6454 )
2017-11-25 11:34:24 -07:00
健美猫
086a1cfe7e
r: add version 3.4.2. ( #6455 )
2017-11-25 11:34:05 -07:00
healther
7c174f11ec
add new version to node-js ( #6444 )
2017-11-25 09:30:06 +01:00
Eric
be095fdb21
r-lars: Create new package ( #6453 )
2017-11-25 09:24:53 +01:00
Robert Cimrman
77bfda4da6
sfepy: Create new package ( #6439 )
2017-11-24 12:21:09 +01:00
健美猫
70adbaeeba
Octave depends on qt+opengl. ( #6437 )
2017-11-24 09:40:48 +01:00
Massimiliano Culpo
cde5fdde20
Openblas needs FC, not F77 ( #6435 )
...
fixes #5591
2017-11-24 07:15:01 +01:00
Michael Kuron
ff4a4fcd9e
siesta: add netcdf support ( #6431 )
2017-11-23 13:39:32 -07:00
George Hartzell
2a2670175d
boost@1.54 alse needs the call_once patch ( #6434 )
2017-11-23 20:17:17 +01:00
Michael Kuhn
5bbbfe9446
Introduce virtual dependency pkgconfig ( #5198 )
...
There are two providers, pkgconf and pkg-config, with the former being
the default provider.
2017-11-23 08:05:38 -07:00
Sergey Kosukhin
7f0659f032
New version and patch for 'sqlite'. ( #6303 )
2017-11-23 08:04:41 -07:00
Audrey Thoma
cd7d812be9
express: new package ( #6281 )
2017-11-23 08:04:02 -07:00
Ondřej Čertík
7a2b3b2588
Add a patch for Intel 18.0.1 ( #6392 )
2017-11-23 07:28:35 -07:00
Michael F. Herbst
a955f63530
Add bohrium to spack ( #6395 )
...
* Add bohrium package.py
* Changes suggested by @davydden
* Add +cuda guard
* Specify required environment setup
2017-11-23 07:24:55 -07:00
Eric
1dba6435bd
r-plotly: Create new package ( #6423 )
2017-11-23 07:17:17 -07:00
Denis Davydov
ddf10fa322
dealii: limit CMake to 3.9 as 3.10.0 is not supported yet ( #6427 )
2017-11-23 07:16:44 -07:00
sknigh
e2cf933ec1
gcc environment module will set CC, CXX, FC, F77, and F90 flags ( #3954 )
2017-11-23 12:44:55 +01:00
Cameron Smith
951679376e
zoltan: add optional dependency on parmetis ( #6387 )
2017-11-23 09:03:02 +01:00
Eric
6fd1009081
r-mixtools: Create new package ( #6421 )
2017-11-23 09:01:10 +01:00
Eric
bdd8bb1fd9
r-ranger: Create new package ( #6422 )
2017-11-23 09:00:32 +01:00
Chien-Chang Feng
630d7e19db
py-yt: Yt-project is moved. Add new version. ( #6409 )
2017-11-23 07:25:35 +01:00
Jon Rood
8b63cc6ad6
Using MPI environment compiler variables for pnetcdf. ( #6424 )
2017-11-22 21:34:21 -08:00
Massimiliano Culpo
0fc6611dc2
Changed every docs variant into doc as decided in #2663 ( #6412 )
...
fixes #2663
2017-11-22 15:06:59 +01:00
Sergey Kosukhin
d4ab511f73
Script for 'eccodes' is compatible with Python 3. ( #6402 )
2017-11-21 15:59:04 -07:00
Audrey Thoma
a0df5ae3e0
phantompeakqualtools: new package ( #6403 )
2017-11-21 15:58:20 -07:00
Eric
9e013ee036
r-pbapply: Create new package ( #6377 )
2017-11-21 13:45:12 -07:00
Eric
5a72d30816
r-ggjoy: Create new package ( #6399 )
2017-11-21 13:44:25 -07:00
Eric
60b50a7bd2
r-ica: Create new package ( #6400 )
2017-11-21 13:43:02 -07:00
Eric
d6a5310df5
r-cppprogress: Create new package ( #6398 )
2017-11-21 13:42:44 -07:00
Eric
d725904803
r-sdmtools: Create new package ( #6397 )
2017-11-21 13:42:28 -07:00
BenBrands
27b9d2614c
CMake: add 3.10.0 ( #6393 )
2017-11-21 08:04:53 -07:00
David Poliakoff
003f83db50
gotcha: new package ( #6391 )
...
* Initial stab at a package for Gotcha
* Commit with no boilerplate
* Flake8
2017-11-21 08:04:43 -07:00
Audrey Thoma
c4613b8e1f
mira: new package ( #6385 )
2017-11-21 08:04:08 -07:00
Michael F. Herbst
f0c0243cd4
Fix to allow installing pocl 0.14 again ( #6372 )
...
* Resolve issue 4669
* Use prefix path magic attribute
2017-11-21 08:03:36 -07:00
Yifan Zhu
5250c8eb0a
r-broom: new package ( #6282 )
2017-11-21 10:49:09 +01:00
Yifan Zhu
e3abc7bfa4
r-haven: created new package ( #6293 )
2017-11-21 09:54:43 +01:00
Yifan Zhu
b7189ecf9e
r-psych: created new package ( #6286 )
2017-11-21 09:40:10 +01:00
Yifan Zhu
ef8429c99c
r-modelr: created new package ( #6289 )
2017-11-21 09:26:44 +01:00
Eric
0743c5bde6
r-crosstalk: Create new package ( #6383 )
2017-11-20 21:52:58 -07:00
Eric
cd5e6a14bb
r-fnn: Create new package ( #6384 )
2017-11-20 21:52:39 -07:00
Audrey Thoma
8b2abfb28b
masurca: new package ( #6386 )
2017-11-20 21:51:35 -07:00
Eric
70ce7e2099
meme: add version 4.12.0 ( #6388 )
2017-11-20 21:50:46 -07:00
Eric
035cce2b81
py-biopython: add version 1.70 ( #6389 )
2017-11-20 21:50:25 -07:00
Eric
17e0b81463
r-ggridges: Create new package ( #6376 )
2017-11-20 14:18:16 -07:00
Eric
30b794254f
py-pysam: add version 0.13 ( #6382 )
2017-11-20 14:08:25 -07:00
BenBrands
93d5a91a56
dealii: fix HDF5 dependency ( #6374 )
2017-11-20 11:57:53 -07:00
BenBrands
83db25967e
Atlas: add 3.11.39 ( #6375 )
2017-11-20 11:57:34 -07:00
Eric
9040f34aba
r-tclust: Create new package ( #6380 )
2017-11-20 11:57:04 -07:00
Eric
1d69dbe7ae
r-diffusionmap: Create new package ( #6378 )
2017-11-20 11:56:47 -07:00
Eric
012acdc7a2
r-chemometrics: Create new package ( #6379 )
2017-11-20 11:56:33 -07:00
Denis Davydov
4e878c21cd
elpa: add 2017.05.002 and 2017.05.003 ( #5306 )
...
* elpa: add 2017.05.002 and 2017.05.03
* add a variant for optimization flags
2017-11-20 11:17:22 -07:00
Denis Davydov
34da07db9b
dealii: add cuda_arch variant via CudaPackage ( #6070 )
2017-11-19 12:39:13 -07:00
Adam J. Stewart
acbdf516f7
Add a new package for rlwrap ( #6371 )
2017-11-19 06:45:25 -07:00
lingnanyuan
cf3df2a321
r-dose: Create new package. ( #6355 )
2017-11-18 12:54:14 -07:00
Eric
20092adb94
r-vgam: Create new package ( #6363 )
2017-11-18 06:39:55 -07:00
Eric
618f4dff6d
r-bindrcpp: Create new package ( #6366 )
2017-11-18 06:36:39 -07:00
Eric
1c55a401b1
r-dtw: Create new package ( #6365 )
2017-11-18 06:35:47 -07:00
Eric
ebfc7bd7aa
r-som: Create new package ( #6364 )
2017-11-18 06:35:21 -07:00
Michael Kuron
e2fea1e1e6
siesta: new package ( #6346 )
...
* siesta: new package
* siesta: use libs instead of ld_flags everywhere
2017-11-17 19:01:15 -07:00
Stephen Hudson
b2f0306c6f
Mpi4py update ( #6342 )
2017-11-17 19:00:36 -07:00
Javier Cervantes
21da747a5d
hepmc: fix hash and urls, add new version 3.0.0 ( #6348 )
2017-11-17 18:59:52 -07:00
健美猫
8bc024d2d9
Add cluster.2017.5 and cluster.2018.1. ( #6349 )
2017-11-17 18:59:18 -07:00
lingnanyuan
9647038f27
r-rvcheck: Create new package. ( #6351 )
2017-11-17 18:59:00 -07:00
lingnanyuan
eda91bebd7
r-gosemsim: Create new package. ( #6352 )
2017-11-17 18:58:43 -07:00
lingnanyuan
d836d7e7ea
r-do-db: Create new package. ( #6353 )
2017-11-17 18:58:23 -07:00
lingnanyuan
c604638681
r-fgsea: Create new package. ( #6354 )
2017-11-17 18:58:01 -07:00
lingnanyuan
5c06255b24
r-clusterprofiler: Create new package. ( #6356 )
2017-11-17 18:57:40 -07:00
sknigh
1f8f593dd6
Added libhio 1.4.0.0 ( #6357 )
2017-11-17 18:57:17 -07:00
Brian Homerding
17debcb9b2
NuT: Add Installation of lib and demo app ( #6341 )
2017-11-16 16:30:42 -07:00
Matthias Vogelgesang
a62f8698c3
Add UFO and dependencies ( #6337 )
...
* Add json-glib
* Add ufo-core
* Add ufo-filters
2017-11-16 09:37:17 -08:00
healther
ef3c909701
add package py-numba ( #6323 )
...
* add package py-numba
* Update package.py
* Update package.py
* Update package.py
2017-11-16 10:13:20 -07:00
Audrey Thoma
e941f33eaf
meraculous: new package ( #6292 )
...
* meraculous: new package
* adding gcc version conflict
* Update package.py
* Update package.py
2017-11-16 09:40:46 -07:00
lingnanyuan
bb3d5fd313
r-rhdf5: Create new package. ( #6330 )
2017-11-16 09:40:15 -07:00
lingnanyuan
e732a554ff
r-shortread: Create new package. ( #6332 )
2017-11-16 09:30:18 -07:00
lingnanyuan
cca06422fa
r-sva: Create new package. ( #6333 )
2017-11-16 09:28:59 -07:00
David Hows
d89b09493c
Minor package fixes ( #6334 )
...
* Add no-implicit-fallthrough to MsgpackC
* Add 0.2.1 of Neovim
* Lint
2017-11-16 09:28:40 -07:00
Stephen Hudson
9d1224e5d8
py-petsc4py: Update version to 3.8.0 and add dependencies ( #5792 )
...
* py-petsc4py: Update version to 3.8.0 and add dependencies
- Added explicit dependency on python and numpy
* Kept old version - and corrected minimal python version
* Update to 3.8.1
2017-11-15 16:49:36 -07:00
baip
697f3ea71d
cp2k: add dependency on smm and libxc & new version 5.1 ( #6194 )
...
* cp2k: add libxsmm dependency
* cp2k: add libxc dependency
* cp2k: add smm variant to select from libxsmm or libsmm
* cp2k: add version 5.1
2017-11-15 16:49:08 -07:00
Christoph Junghans
7da8a02cbf
git grep --files-with-matches github.com/llnl/spack | xargs sed -i '/github.com/s@llnl/spack@spack/spack@' ( #6329 )
2017-11-15 16:46:39 -07:00
