Commit graph

26396 commits

Author SHA1 Message Date
Elsa Gonsiorowski, PhD
998bf90b35
SCR release v3.0, including components (#29924) 2022-06-13 18:17:17 +02:00
liuyangzhuan
2ca32fbc8c
Remove filter operation for superlu-dist to avoid permission issues on read-only systems (#30970)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize

* adding gptune package

* minor fix for macos spack test

* update patch for py-scikit-optimize; update test files for gptune

* fixing gptune package style error

* fixing unit tests

* a few changes reviewed in the PR

* improved gptune package.py with a few newly added/improved dependencies

* fixed a few style errors

* minor fix on package name py-pyro4

* fixing more style errors

* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* resolved a few issues in the PR

* fixing file permissions

* a few minor changes

* style correction

* minor correction to jq package file

* Update var/spack/repos/builtin/packages/py-pyro4/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixing a few issues in the PR

* adding py-selectors34 required by py-pyro4

* improved the superlu-dist package

* improved the superlu-dist package

* moree changes to gptune and py-selectors34 based on the PR

* Update var/spack/repos/builtin/packages/py-selectors34/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi

* fixing style issue of gptune

* changing file mode

* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant

* fixing style error

* corrected pddrive_spawn path in gptune test; enforcing gcc>7

* fixing style error

* setting environment variables when loading gptune

* removing debug print in hypre/package.py

* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR

* changing site_packages_dir to python_platlib

* not using python3.9 for py-gpy, which causes due to dropped support of tp_print

* more replacement of site_packages_dir

* fixing a few dependencies in gptune; added a gptune version

* adding url for gptune

* minor correction of gptune

* updating versions in butterflypack

* added a version for openturns

* added a url for openturns

* minor fix for openturns

* Update var/spack/repos/builtin/packages/openturns/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* added version2.1.1 for butterflypack

* fixing a tag in butterflypack

* minor fix for superlu-dist

* removed file filter for superlu-dist

* Update var/spack/repos/builtin/packages/superlu-dist/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* superlu-dist: add version detection for the testing; removing unused lines

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-13 08:48:55 -07:00
Jordan Galby
e50d08ce48
Fix spack style arbitrary git rev as base (#31019)
Allow `spack style -b @` or `spack style -b origin/develop` to work as
expected.

Regression since spack 0.17 #25085
2022-06-13 15:22:35 +00:00
Sergey Kosukhin
696d81513d
nvhpc: conflict with all compilers except for gcc (#31073) 2022-06-13 16:47:28 +02:00
Mark Grondona
b38afa7528
Add flux-core v0.39.0 and v0.40.0 and flux-sched v0.23.0 (#31061) 2022-06-13 16:15:25 +02:00
Mikael Simberg
0f2786c9d3
Fix tracy-client package (#31076) 2022-06-13 16:11:00 +02:00
Carson Woods
f72c2ab583
Fix download URL for pcre package (#31077) 2022-06-13 16:05:25 +02:00
Adam J. Stewart
f6e6403fd1
Fix packages that will break with PIL 10 (#31071) 2022-06-13 16:04:13 +02:00
Simon Pintarelli
5550271ead
atompaw: add v4.2.0.1 (#31087)
apply ifort patch including v4.2.0.0, but not for 4.2.0.1 anymore
2022-06-13 15:15:59 +02:00
Jack Morrison
a1b19345b1
opa-psm2: add v11.2.228 (#31089) 2022-06-13 14:58:25 +02:00
Erik Schnetter
e2aeb06c91
adios2: add v2.8.1 (#31090) 2022-06-13 14:55:09 +02:00
Brice Videau
14ae0e0d94
py-py-spy: fix dependency on libunwind (#31013)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-06-13 14:16:26 +02:00
Seth R. Johnson
516587a1da
py-breathe: new version 4.33.1 and fix dependencies (#31098)
* py-breathe: new version 4.33.1 and fix dependencies

* remove unused dependencies
2022-06-12 18:06:39 -05:00
Paul R. C. Kent
dc36fd87bb
Addllvmv1405 (#31099) 2022-06-12 11:24:31 -07:00
marcosmazz
06b5141d01
Limit Jasper version for WPS (#31088)
* Limit Jasper version for WPS

Jasper@3: changed API and does not support interfaces used by WPS.
This prevented ungrib.exe build and failed silently.
2022-06-12 19:02:07 +02:00
Seth R. Johnson
27610838dd
py-sphinxcontrib-bibtex: new version 2.4.2 (#31097) 2022-06-12 09:24:46 -07:00
Danny McClanahan
0c7fd9bd8c
fix doubly shell quoting args to spack spec (#29282)
* add test to verify fix works
* fix spec cflags/variants parsing test (breaking change)
* fix `spack spec` arg quoting issue
* add error report for deprecated cflags coalescing
* use .group(n) vs subscript regex group extraction for 3.5 compat
* add random test for untested functionality to pass codecov
* fix new test failure since rebase
2022-06-11 12:35:46 -07:00
Todd Gamblin
bf2b30a5f5
bugfix: preserve dict order for Spec.dag_hash() in Python 2 (#31092)
Fix a bug introduced in #21720. `spack_json.dump()` calls `_strify()` on dictionaries to
convert `unicode` to `str`, but it constructs `dict` objects instead of
`collections.OrderedDict` objects, so in Python 2 (or earlier versions of 3) it can
scramble dictionary order.

This can cause hashes to differ between Python 2 and Python 3, or between Python 3.7
and earlier Python 3's.

- [x] use `OrderedDict` in `_strify`
- [x] add a regression test
2022-06-10 20:32:35 -07:00
Asher Mancinelli
f42680b785
ripgrep: remove need for llvm (#31062) 2022-06-10 11:45:53 -07:00
Sergey Kosukhin
a2afd5b82f
clingo: fix string formatting in error messages (#31084) 2022-06-10 16:24:27 +00:00
Cyrus Harrison
11f1b371f7
babelflow: fix conditional constraint in "when" decorator (#31057) 2022-06-10 18:07:22 +02:00
Valentin Churavy
cfc46504ac
enzyme: new version 0.0.32 (#31081)
Add LLDEnzyme to libs list
2022-06-10 11:48:35 +02:00
dependabot[bot]
163251aa65
build(deps): bump actions/setup-python from 3.1.2 to 4 (#31059)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3.1.2 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](98f2ad02fd...d09bd5e600)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-06-10 11:03:36 +02:00
eugeneswalker
6ab9f3a290
exago@1.4.1: : needs py-pytest (#31060) 2022-06-09 16:55:04 -07:00
Gregory Lee
45043bcdf5
py-xdot requires explicit dependency on harfbuzz (#30968) 2022-06-09 13:53:32 -06:00
Adam J. Stewart
7642fa3d99
py-kornia: add v0.6.5 (#31067) 2022-06-09 12:13:51 -07:00
Adam J. Stewart
1689f7fcbe
py-pillow: add v9.1.1 (#31068) 2022-06-09 12:12:02 -07:00
Adam J. Stewart
4f67afeb5f
py-pytorch-lightning: add v1.6.4 (#31069) 2022-06-09 12:09:05 -07:00
Adam J. Stewart
9d8ecffed0
py-timm: add v0.5.4 (#31070) 2022-06-09 12:06:58 -07:00
Cyrus Harrison
1ada7ea809
add fix for implicit includes with newer vers of gcc (#31056) 2022-06-09 09:40:08 -07:00
Martin Lang
4a8db00691
nfft, pnfft: fix detection of fftw variants (precision) (#30935)
* nfft, pnfft: fix detection of fftw variants (precision)

* nfft, pnfft: use fftw's selected_precisions; avoid repetitive calls to spec

Co-authored-by: Martin Lang <martin.lang@mpsd.mpg.de>
2022-06-09 08:47:12 -07:00
Tim Fuller
01f8236bf5
Allow more fine-grained control over what submodules are updated (#27293)
The "submodules" argument of the "version" directive can now accept
a callable that returns a list of submodules, in addition to the usual
Boolean values
2022-06-09 07:45:49 +02:00
Adam J. Stewart
57822d3014
clingo: fix ~python build (#30824) 2022-06-09 07:33:56 +02:00
Massimiliano Culpo
3fdb3f832a
Cancel running workflows automatically on PR update (#31044)
* Cancel running workflows automatically on PR update
* Add the last update later to check cancellation is working
* Use github.run_number instead of github.sha
2022-06-08 15:46:46 -07:00
Asher Mancinelli
bedad508a9
lua-mpack: build with -fPIC always (#31054) 2022-06-08 21:37:55 +00:00
Adam J. Stewart
31f6dedecd
py-memray: add new package (#31033)
* py-memray: add new package

* Link to Python

* Add missing non-Python deps
2022-06-08 13:52:38 -07:00
Adam J. Stewart
dc0c4959db
cuDNN: add v8.4.0.27-11.6 (#31034) 2022-06-08 13:48:12 -07:00
Mark W. Krentel
8550b6cf49
hpctoolkit: adjust dependencies for develop (#31050)
The develop branch now uses libiberty, but not binutils or libdwarf.
2022-06-08 13:42:32 -07:00
Jen Herting
0e5c4c9cbf
Draft: Pending #29806 [py-sentry-sdk] added version 1.5.5 (#29143)
* [py-sentry-sdk] audited dependencies and relisted extras as variants

* [py-sentry-sdk] added version 1.5.5

* [py-sentry-sdk] flake8

* [py-sentry-sdk]

- added "descriptions" to variants
- removed conflicts
  - replaced with when statements in varients
2022-06-08 20:41:44 +00:00
Jen Herting
9bac72e818
New package: py-colossialai (#30807)
* colossalai is dependency for deepoffense

* [py-colossalai] added homepage

* [py-colossalai] added dependencies and removed older versions

* [py-colossalai] updated pypi url to match listed version

* [py-colossalai] spack -> spack.package

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-06-08 20:34:34 +00:00
Brice Videau
a65a217c54
py-ytopt: add v0.0.4 (#31029) 2022-06-08 19:43:20 +00:00
Ryan Marcellino
26e6aae8d4
new package: py-pytest-asyncio (#31040) 2022-06-08 11:31:31 -07:00
Manuela Kuhn
d6fabd1533
py-glmsingle: add new package (#31043) 2022-06-08 10:03:18 -07:00
Massimiliano Culpo
d245c46487
bootstrap: account for disabled sources (#31042)
* bootstrap: account for disabled sources

Fix a bug introduced in #30192, which effectively skips
any prescription on disabled bootstrapping sources.

* Add unit test to avoid regression
2022-06-08 07:17:37 -06:00
Adam J. Stewart
3eba28e383
OpenCV: add v4.6.0 (#31022) 2022-06-08 14:31:55 +02:00
Adam J. Stewart
0d91cb58dc
py-pympler: add v1.0.1 (#31031) 2022-06-08 14:27:56 +02:00
Adam J. Stewart
5f55abeecb
Python: add v3.10.5 (#31039) 2022-06-08 14:22:51 +02:00
psakievich
c3c2416672
Nalu-Wind: allow for lowest order infinity version (#31036)
This will allow us to pin trilinos in our repo
2022-06-08 14:22:10 +02:00
Adam J. Stewart
9e2bc41e45
libtiff: add v4.4.0 (#31008) 2022-06-07 15:49:56 -06:00
Axel Huebl
8f80c5e6f7
openPMD-api: 0.14.5 (#31023)
Add the latest release.
2022-06-07 14:32:43 -07:00