Commit graph

21287 commits

Author SHA1 Message Date
Mark W. Krentel
968d393f6b
intel-tbb: explicitly set OS var and pass to TBB (#23852)
The common.inc script in TBB uses the environ var 'OS' to determine
the platform it's on.  On Linux, this is normally empty and TBB falls
back to uname.  But some systems set this to 'CentOS Linux 8' which is
descriptive, but not exactly what common.inc is looking for.

Instead, take the value from python and explicitly set OS to what TBB
expects to avoid this problem.
2021-06-08 17:06:16 -05:00
eugeneswalker
ac3b46fc95
e4s ci: re-enable veloc builds after recent fixes (#24190) 2021-06-08 14:10:44 -07:00
Massimiliano Culpo
fd03d539cc
mypy: add types-six to the list of installed packages (#24207)
See https://mypy-lang.blogspot.com/2021/05/the-upcoming-switch-to-modular-typeshed.html
for a broader explanation.
2021-06-08 20:46:25 +00:00
Scott Wittenburg
92bef1da6f
Pipelines: Fix default generated rebuild job script (#24185) 2021-06-08 14:33:45 -06:00
Vanessasaurus
3291be6cb1
singularity: add singularityce fork (#24201)
Since the two packages share a common history, the installation
procedure has been factored into a common base class.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-06-08 21:31:18 +02:00
Teodor Nikolov
d0fdbc1ab2
[umpire] Fix missing header (#24198) 2021-06-08 21:17:51 +02:00
Adam J. Stewart
92be358582
Python: fix +tkinter+tix support (#23980)
* Tcl: fix TCLLIBPATH

* Fix TCL|TK|TIX_LIBRARY paths

* Fix TCL_LIBRARY, no tcl8.6 subdir

* Don't rely on os.listdirs sorting

For tcl and tk, we also install the source directory, so there are
two init.tcl and tk.tcl locations. We want the one in lib/lib64,
which should come before the one in share.

* Add more patches

* Fix dylib on macOS

* Tk: add smoke tests

* Tix: add smoke test
2021-06-08 12:45:04 -05:00
Massimiliano Culpo
f33c4e7280
ASP-based solver: permit to use virtual specs in environments (#24199)
Extracting specs for the result of a solve has been factored
as a method into the asp.Result class. The method account for
virtual specs being passed as initial requests.
2021-06-08 19:04:49 +02:00
Massimiliano Culpo
e321578bbe
ASP-based solver: reordered low priority optimization criteria (#24184)
Minimizing compiler mismatches in the DAG and preferring newer 
versions of packages are now higher priority than trying to use as 
many default values as possible in multi-valued variants.
2021-06-08 16:10:49 +02:00
Robert Mijakovic
a2e9a1b642
osu-micro-benchmarks: new version 5.7.1 (#23590) 2021-06-08 08:07:20 -06:00
Todd Gamblin
beed6047e8
macOS: add monterey as macOS version 12. (#24192) 2021-06-08 10:07:34 +00:00
Tamara Dahlgren
11fd88ee3c
Update stand-alone tests to use test stage work directory; also added expected ctest output (#24191) 2021-06-08 03:31:40 -06:00
Glenn Johnson
418db4e910
gatk: make r a variant (#24189)
According to the docs, r is needed for plotting, but plotting is
untested. In addition, the specific version requirement of java for gatk
could lead to multiple installations of r being triggered in an
environment. That might cause people to have to be deliberate about
java in a deployment. All in all, it seems that r is better as a
variant for gatk.
2021-06-08 03:08:10 -06:00
Chris Richardson
f231ae97f4
Changes for ufl and basix (#24187) 2021-06-08 03:07:38 -06:00
Tamara Dahlgren
e1bd3ae4db
biobambam2: update stand-alone tests to use test stage work directory (#24111) 2021-06-08 09:30:21 +02:00
Massimiliano Culpo
729d66a3f8
Fix brittle unit-tests on providers (#24186)
These tests were broken by #24176
2021-06-07 22:16:14 +02:00
Michael Kuhn
4d55203ce5
build_systems: Make autotools builds verbose (#24161)
This is also what our other build systems are doing.
2021-06-07 14:05:35 -04:00
Valentin Volkl
2bdeaa1b48
pkgconf: disable check due to missing dependencies (#24168) 2021-06-07 12:01:24 -06:00
Adam J. Stewart
3d0bad465b
Docs: fix missing backtick in Environments docs (#24109) 2021-06-07 19:05:09 +02:00
Valentin Volkl
506d5744aa
delphes: add v3.5.0 (#24101) 2021-06-07 19:04:34 +02:00
Tamara Dahlgren
026cf7aa30
Update stand-alone tests to use test stage work directory (#24110) 2021-06-07 18:11:10 +02:00
Harmen Stoppels
e12b030def
mpich: fix constraints in provides directives (#24176) 2021-06-07 09:16:56 -06:00
Michael Kuhn
057bf434ce
netdata: add v1.31.0 (#24158)
This also adds some missing dependencies for core functionality.
2021-06-07 17:13:49 +02:00
Glenn Johnson
004f86aab7
r-rpostgres: add new package (#22442) 2021-06-07 17:10:46 +02:00
Glenn Johnson
c01730e33b
r-rmariadb: remove no longer needed patch (#24171)
Since PR #22873 was merged, the configure patch for r-rmariadb is no
longer needed. Also added comment regarding configure arguments.
2021-06-07 17:08:43 +02:00
psakievich
1fed008410
Add int64 back for hypre in nalu-wind (#24140)
To concretize the entire exawind environment together we need `hypre` to be built with the same flags for `nalu-wind` and `amr-wind`.  
@jrood-nrel
2021-06-07 07:35:26 -07:00
Chuck Atkins
b0590bf4e8
axl: Don't deprecate v0.3.0 as it's still actively required by veloc (#24179) 2021-06-07 07:35:08 -07:00
arjun-raj-kuppala
c2901ea14a
AMD ROCm release 4.2.0: bump up mivisionx version and add gtk option to opencv (#23881)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-06-07 15:31:17 +02:00
Harmen Stoppels
b17046723d
Revert "Bootstrap with -O3 in cmake (#23147)" (#24174)
This reverts commit fef05621a7.
2021-06-07 03:37:22 -06:00
Luca Heltai
f07be01fa8
arborx: enable trilinos 13+ (#24153) 2021-06-06 21:07:31 -06:00
Adam J. Stewart
559db31511
py-radiant-mlhub: add new package (#24167) 2021-06-06 21:04:30 -06:00
Adam J. Stewart
e1d194b9a3
NCCL: add new versions (#24155) 2021-06-06 22:22:21 -04:00
Peter Scheibel
6ed7d40be7
axom: don't require hdf5~shared (#24144) 2021-06-06 22:17:39 -04:00
Luca Heltai
1533c2fade
dealii: add support for arborx (#24154) 2021-06-06 22:16:43 -04:00
Glenn Johnson
986bcef160
darshan-runtime: add SGE scheduler (#24160)
* Set job_id for SGE in darshan-runtime package
* Use a multi value variant for scheduler

Only one scheduler can be selected so make the variant multi valued and
set multi=False.
2021-06-06 19:15:40 -04:00
Adam J. Stewart
09d317c293
py-pystac: add new package (#24166) 2021-06-06 19:11:08 -04:00
Adam J. Stewart
7093fb214f
py-tqdm: add version 4.56.2 (#24165) 2021-06-06 14:46:23 -06:00
Paul
534df5cd68
Add Go 1.16.5 and 1.15.13 (#24170) 2021-06-06 17:43:59 +02:00
Chuck Atkins
6c21d64c50
veloc: The axl dependency had an API change in 0.4.0 that breaks veloc (#24157) 2021-06-05 18:25:20 -06:00
Adam J. Stewart
3db5029a4b
GMT: add v6.2.0 (#24164) 2021-06-05 23:39:02 +00:00
Adam J. Stewart
7449d6950a
Fix git_version on macOS (#24163) 2021-06-05 23:30:28 +00:00
Tom Payerle
9f8e40e95c
hdf-eos5: Fix issue when linking against hdf5+szip (#23411) (#23412)
* hdf-eos5: Fix issue when linking against hdf5+szip (#23411)

Should fix issue #23411 when linking against hdf5+szip

Also fix bug if hdf5 does not depend on zlib

Reluctantly added payerle as a maintainer
2021-06-05 07:44:49 -04:00
Greg Becker
af3ebeeea1
apply default linux prefix inspections to all module sets (#24151) 2021-06-04 21:37:20 -06:00
Axel Huebl
42df61d631
py-warpx: 21.06 (#24152) 2021-06-04 21:50:48 -05:00
Tom Payerle
e741211c09
[py-cvxpy]: Add new version, fix depends_on versions (#24147)
Added version 1.1.13

Fixed versions for dependencies based on README.md for package
In particular:
   * versions 1.1.x require python@3, at least 3.4 and for 1.1.13 at least 3.6
   * py-osqp had been pinned to version 0.4.1, but README.md either shows
        no version restriction, of 0.4.1 and higher
   * @1.1.13 requires at least 1.1.6 of py-scs
   * I am assuming since 1.1.x is python@3 only, py-six no longer required
        (it was not explicitly showing up in README.md for these versions)
2021-06-04 17:55:26 -06:00
Manuela Kuhn
4cc27f58db
tk: fix url for patch (#24146) 2021-06-04 18:18:07 -05:00
Michael Kuhn
7d3a3af621
main, modules: fix module roots not being found (#24135)
Since the module roots were removed from the config file,
`--print-shell-vars` cannot find the module roots anymore. Fix it by
using the new `root_path` function. Moreover, the roots for lmod and
modules seems to have been flipped by accident.
2021-06-04 15:33:18 -07:00
Jen Herting
ff73ac6e9a
New package: py-python3-xlib (#24139)
* [py-python3-xlib] created template

* [py-python3-xlib] requires python3

* [py-python3-xlib] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-python3-xlib] added homepage

* [py-python3-xlib] removing homepage entirely
2021-06-04 20:28:14 +00:00
Tamara Dahlgren
5c37db5db3
libceed: Update the hip-related variant (#24142) 2021-06-04 12:45:10 -07:00
Joe Heaton
13978d68ea
enable std c++14 (#24127) 2021-06-04 18:47:32 +00:00