Commit graph

7476 commits

Author SHA1 Message Date
Denis Davydov
957ded209a add updated 2017 versions of Intel packages (#5957) 2017-10-29 15:38:10 -06:00
mmwolf
73fb02229a Changed from setting C compiler to setting C++ compiler (#6011) 2017-10-29 07:42:27 -06:00
Denis Davydov
f6a8ae230e dealii: remove bzip2 dependency for newer versions (#6022) 2017-10-29 07:39:51 -06:00
Yifan Zhu
56c7832789 r-iranges: changed url to git and added versioned dependency on r (#5971) 2017-10-28 12:14:33 -06:00
Audrey Thoma
f340333e6e r-geomorph and other r fixes (#5961) 2017-10-28 12:13:38 -06:00
lingnanyuan
57611397c9 r-e1071: Add list_url. (#5986) 2017-10-28 12:12:52 -06:00
Michael Kuhn
b43e2d2546 likwid: Update checksum (#6007) 2017-10-28 12:12:21 -06:00
Yifan Zhu
43c1bb5f30 r-organismdbi: new package (#5997) 2017-10-28 12:11:44 -06:00
lingnanyuan
3eab6ed4b2 r-aldex2: Create new package. (#6015) 2017-10-28 12:10:22 -06:00
Christoph Junghans
167f7d0cdd
legion: add v17.10.0 (#6019) 2017-10-28 12:09:39 -06:00
Audrey Thoma
edae3ceae7 fixing abyss (#5973) 2017-10-28 17:05:52 +02:00
Sergey Kosukhin
5ebddcd5e3 Bugfix: from_list_url(). (#5780)
This fixes a bug in from_list_url where it was referring to a method
which no longer exists. This also adds a test for the from_list_url
function.
2017-10-27 17:41:41 -07:00
Christoph Junghans
95c8ecb6f5
libaec: add v1.0.2 and generic url (#6017) 2017-10-27 18:22:27 -06:00
Matthias Diener
45bfcfa30a Byobu: new package (#5974) 2017-10-27 10:43:45 -07:00
Christoph Junghans
f9599c1772 ecp-proxy-apps: add more package (#6003) 2017-10-27 08:34:52 -06:00
Christoph Junghans
c97bf0486c SWFFT: initial commit (#5953)
* SWFFT: initial commit

* swfft: fix build target

* swfft: add v1.0

* Update package.py
2017-10-27 07:20:29 -06:00
Christoph Junghans
13b41cd53c comd: add v1.1 (#5994)
* comd: add v1.1

* Update package.py

* remove serial variant, now ~mpi

* Update package.py
2017-10-27 07:20:18 -06:00
lingnanyuan
222fee1cb3 r-graph: Create new package. (#5958) 2017-10-27 08:34:33 +02:00
lingnanyuan
f244653496 r-category: Create new package. (#5959) 2017-10-27 08:34:16 +02:00
lingnanyuan
715a679245 r-methodss3: Create new package. (#5960) 2017-10-27 08:32:20 +02:00
lingnanyuan
737f9eee5c r-oo: Create new package. (#5962) 2017-10-27 08:31:46 +02:00
lingnanyuan
f676d8f3d7 r-utils: Create new package. (#5964) 2017-10-27 08:31:26 +02:00
lingnanyuan
3bb4572e81 r-pfam-db: Create new package. (#5965) 2017-10-27 08:27:19 +02:00
lingnanyuan
95ece343c4 r-oligoclasses: Create new package. (#5966) 2017-10-27 08:26:25 +02:00
Yifan Zhu
3ea6a11043 r-interactivedisplaybase: created new package (#5967) 2017-10-27 08:26:02 +02:00
lingnanyuan
c672b2b191 r-annotationforge: Create new package. (#5968) 2017-10-27 08:25:12 +02:00
lingnanyuan
57528fddbb r-gostats: Create new package. (#5969) 2017-10-27 08:24:49 +02:00
Audrey Thoma
835e6107fe r-mcmcglmm: new package (#5970) 2017-10-27 08:24:28 +02:00
Yifan Zhu
7b0fd6510c r-annotationhub: created new package (#5972) 2017-10-27 08:23:25 +02:00
Denis Davydov
c2094a11e3 gnuplot: add 5.2.0 and 5.0.7 (#5979) 2017-10-27 08:20:34 +02:00
lingnanyuan
dc8a0e8410 r-deseq2: Create new package. (#5981) 2017-10-27 08:16:40 +02:00
lingnanyuan
1de2109a5a r-agdex: Create new package. (#5983) 2017-10-27 08:16:04 +02:00
lingnanyuan
82b1731ded r-agilp: Create new package. (#5984) 2017-10-27 08:15:39 +02:00
lingnanyuan
7c56318cb5 r-aims: Create new package. (#5987) 2017-10-27 08:14:55 +02:00
George Hartzell
55b79dca8c Add info for go@1.9.2 (#5989)
The go team released 1.9.2 which includes fixes for some things
that 1.9.1 broke:

> ... include fixes to the compiler, linker, runtime, documentation, go command, and the crypto/x509, database/sql, log, and net/smtp packages. They include a fix to a bug introduced in Go 1.9.1 and Go 1.8.4 that broke "go get" of non-Git repositories under certain conditions.
2017-10-27 08:13:33 +02:00
Yifan Zhu
3849401d85 r-annotationfilter: created new package (#5995) 2017-10-27 08:09:31 +02:00
Yifan Zhu
0c2a691b1b r-protgenerics: created new package (#5998) 2017-10-27 08:08:16 +02:00
Abhinav Bhatele
ad51e818a7 ecp-proxy-apps: add dependencies (#5999) 2017-10-26 19:54:40 -06:00
Christoph Junghans
0b3247c23d miniamr: bump to v1.4.0 (#5975) 2017-10-26 19:51:50 -06:00
Ben Boeckel
bd6378a6d2 Package.extends: update semantics when package isn't concrete (#5600)
This updates the logic for Package.extends so that if the spec
associated with the package is not concrete, it will report true if
the package *could extend* the given spec; generally speaking a
package could extend a spec as long as none of the details associated
with its extendee spec conflict with the given spec. When the spec
associated with the package is concrete, this function will only
report whether the package *does extend* the given spec. When both
the specs are concrete, the semantics are the same as before.
2017-10-26 13:12:32 -07:00
Ondřej Čertík
0e464f86bb Exodus: skip the -G "Unix Makefiles" part (#5906)
* Exodus: skip the -G "Unix Makefiles" part

The problem is that spack passes -G "Unix Makefiles" into cmake, which normally
works. But in the Exodus package, it is being passed into a bash wrapper
script. In there, the $@ then loses the information about "Unix Makefiles"
being just one argument, and in effect passes -G Unix Makefiles into the cmake
(without quotes), and so cmake only sees -G Unix, and then fails. This is a
known problem with bash with no simple solutions. As a workaround, this patch
skips the first two arguments, i.e., -G and "Unix Makefiles". This makes it
work.

Fixes #5895.

* Port exodusii to cmake

The cmake options were taken from the cmake-exodus bash script and ported to
spack directly.

* Use variant forwarding to forward the 'mpi'

Now instead of

    spack install exodusii~mpi^netcdf~mpi^hdf5~mpi

one can just use

    spack install exodusii~mpi
2017-10-26 13:50:18 -06:00
Patrick Gartung
8e47b17a4d Buildcache: symlinks, externals, & install-checking (#5894)
* When creating a tar of a package for a build cache, symlinks are
  preserved (the corresponding path in the newly-created tarfile will
  be a symlink rather than a copy of the file)
* Dont add external packages to a build cache
* When installing from binary cache, don't create install prefix until
  verification is complete
2017-10-26 11:06:59 -07:00
Christoph Junghans
5c09176014 minife: version bump to v2.1.0 (#5985) 2017-10-26 11:45:40 -06:00
Abhinav Bhatele
0ff1fe90fa Laghos: new package (#5956) 2017-10-26 09:18:57 -06:00
Abhinav Bhatele
02744141e9 sw4lite: fix build errors and add variants (#5944)
* sw4lite: fix build errors and add variants

* sw4lite: change linking against blas and lapack

* change order of blas and lapack

* satisfy flake8 requirements

* Update package.py
2017-10-26 09:18:05 -06:00
Jon Rood
18d2fe7647 Customization of the Paraview module file to its nonstandard directory structure (#5799)
* Add the custom paraview lib directory structure to the library paths in the paraview module file.

* Fixing flake8 issues.

* Checking if lib64 exists for paraview module file generation, else use lib.

* Fixing more flake8 problems I introduced.
2017-10-26 11:12:04 +02:00
Christoph Junghans
a05bbd7104 flang: fixed llvm dep (#5948)
* flang: fixed llvm dep

* add support for llvm-5

* Update package.py

* Update package.py
2017-10-26 09:34:33 +02:00
Johann Klähn
306f536138 Add option to install clang python bindings to llvm (#5774) 2017-10-26 01:46:03 +02:00
Ondřej Čertík
89b0a09de0 Make clang use libc++ by default (#5943)
Since LLVM 3.9 Clang can use the libc++ library by default using the
CLANG_DEFAULT_CXX_STDLIB cmake configuration variable, without having to
specify the -stdlib=libc++ option on the clang++ command line.

This commit makes clang++ use libc++ by default for LLVM 3.9 and later if the
libcxx variant is on.

Fixes #5942.
2017-10-25 16:19:32 -06:00
Ondřej Čertík
aa750f12de Colorize "Installing pkg_name" (#5950)
Now one can quickly visually see in the terminal which packages are installed
and where each package begins and ends in the log.
2017-10-26 00:06:56 +02:00