* [hypre] Add the 'headers' property plus a small tweak in the 'libs'
property.
* [hypre] Add fallbacks for searching for '.libs' in 'prefix.lib64' and
in all of 'prefix'.
* [hypre] Fix style.
* [hypre] Use find_headers instead of find + HeaderList.
* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)
* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"
* packages/phist: fix some more flake8 errors
* add headers property to netlib-lapack and intel-mkl
* ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())
* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)
* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"
* packages/phist: fix some more flake8 errors
* phist: use headers property to find lapacke include dir
* phist: fix flake8 error
* phist: be more specific about dependencies and update version
* phist: state trilinos minimum version when building with Tpetra kernels
* gmp: add oldish version 5.1.3 with checksum
* phist: get rid of the 'petsc+complex' variant, it can be installed by kernel_lib=petsc ^petsc+complex
* phist: new version
* phist: fix version checksum
* Revert "add headers property to netlib-lapack and intel-mkl"
This reverts commit d8cb62905ebfb2cba186fd2d736d54a88a49d089.
* Revert "ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())"
This reverts commit d406a77ed7879c124fbaf1d757d002b9f0771620.
* phist: remove unused function
* phist: reorder package file versions/variants/depends_on/rest
* phist: some minor changes requested by @adamjsteward
* Add latest version of MPFR and patches for older versions
* Fetch and checksum patches instead of storing them
* Fix bug, version attribute was being overridden
* meme: added perl-xml-parser dependency, resolved issue. still need to fix ghostscript or image-magick, conversion not working.
* meme: fixed issue with libxslt/libxml2 conflict, and added imagemagick support
* meme: removing libxslt/libxml2 dependency lines
* meme: configure args
* meme: separating configure args
* meme: removing a comment, and hoping for travis to rebuild. site seems back up.
* meme: make image-magick optional
* meme: add comment referencing PR
* meme: bah flake8
* Promote to Autotools for simplicity; broaden Intel CPU opt targeting from SSE4.2 to AVX2
* make Intel CPU opt targeting same as in ../libxc
* flake8 W291
* use canonical means to pass (ahem) the test phase, h/t @adamjstewart
* revert f25d598 (unrelated merge)
* re-merge
* make py-setuptools a run-time-only dep for py-basemap and patch python package to only apply setuptools flag for build deps
* py-qtconsole does not require setuptools
* intel-xed: new package
The Intel X86 Encoder Decoder library for encoding and decoding
x86 machine instructions.
* intel-xed: style fixes for flake8.
* intel-xed: better style fix
* intel-xed: update to version 2018.02.14, add PYTHONPATH for
building with python 3, cleanup the opt flag.
The restrict compilation option with icc causes deadlock when multithreading is used. This issue has already been reported to the Scotch development team, but for current versions it is more reliable not to use the restrict compilation option.
* libtool: actually do symlinking correctly on darwin
Version 4 of the libtool/darwin debacle:
AutotoolsPackage hardcodes libtool & libtoolize into the autoreconf
stage, so the commands `libtool` and `libtoolize` MUST be present, and
shimming in glibtoolize into AutotoolsPackage when sys.platfrom ==
'darwin' does not work.
join_path(spec['libtool'].prefix.bin, 'libtool') still shadows system
BSD libtool (in apple-cctools, see PR #7177), but this shadowing could
be okay, depending on the combination of dependent specs.
* librom: new package
* Adding unzip package.
* Removing bzip2 dependency in unzip and raising an error when on Cray.
* Fixing error.
* Using conflicts statement for Cray detection in unzip package.
* add headers property to netlib-lapack and intel-mkl
* ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())
* fix flake8 errors
* ghost: remove unnecessary query parameter
* fix flake8 errors
* ghost: make it a CudaPackage (as suggested by @davydden, thanks!)
* ghost: missing whitespace
* Fix a bug when checking for 'xl' or 'xl_r' compiler.
* Add support for parallel build - the 's', 'c', 'd', and 'z' targets
are build separately allowing parallel builds.
* When build '+shared', inject all dependencies into the link lines of
the mumps libraries.
* Run the examples only when installing with the '--test' Spack option.
It seems there has been a change in concretization that resulted in
a request for a llvm latest (5.0.1) while not satisfying the later
more precise request for a version.
Remove the first line and only rely on the last.
A build of python@3.X had the following in the logs:
```
The necessary bits to build these optional modules were not found:
_dbm _gdbm _tkinter
```
As Tkinter is already a variant, we adopt the same strategy for dbm.
This includes:
* Added latest available versions (1.11.9, 2.0.0)
* Added variants to enable graphical output from lstopo
* Enabled build of the bundled netloc package if @2.0.0:
* Added dependency from numactl if @:1.11.9
* Added a constraint to avoid using hwloc@2.0.0 with openmpi
cube's configure only recognizes qt versions with single digit version
components and breaks with qt 5.10. Patch the configure files directly
to avoid having to regenerate them.
Mscgen is a small program that parses Message Sequence Chart descriptions and
produces PNG, SVG, EPS or server side image maps (ismaps) as the output.
See http://www.mcternan.me.uk/mscgen/
This is needed when using system lua on RHEL and clones where lua
is installed in /usr/lib64. Note that the path entry for lua in
packages.yaml should specify the major/minor version of lua (since
this is used to calculate the lua lib directory)
updated hoomd-blue to latest tagged release in repo. This version also supports newer gcc6 compilers, so added constraint for older version to avoid breaking existing installs.
+ Newer versions of zoltan2 are doing test compiles that link to parmetis. If
these checks don't find `metis.h`, the check fails.
+ This small tweak ensures that the zoltan2 configure step can find `metis.h`
that is provided by spack.
For hdf5 `1.8.10` and some compilers, the hdf5 build system adds the
'-ansi' flag. hdf5 1.8.10 is not actually ansi compliant so this
adds a patch to modify the places where it violates ansi
compatibility (which ends up being a few comments).
Make neuron package more generic
* find the bin directory dynamically for use in run_env and spack_env
* replace filter_compilers after install with filter_compiler_wrappers
* update checksum for _current_ 7.5 version
* make +python conflict with ~shared
* prepend the architecture specific lib directory to the LD_LIBRARY_PATH
Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
Fix installs as "root" user for the last libSplash release.
Missing quoting of string compares resulted in a CMake error
when run as root (e.g. in a Docker build).
This updates Cray.setup_platform_environment to use cray-specific
pkgconfig paths so that all providers of 'pkgconfig' have access
to them (previously the 'pkg-config' provider had this but the
'pkgconf' provider did not).
* [OpenMPI] Add the 'headers' property. This removes some redundant
headers from sub-directories, returned by the default '.headers'
handler.
* [OpenMPI] In the .headers property, add a fallback to search all of
prefix for the mpi.h header. Recommended by @junghans to support some
external configurations, see #7268.
* add verilator package
* try to add environment variable and include folder
* manually install existing scripts and patch out spack's CXX wrapper
* added some comments
* make flake8 happy
Adds Google's new cpu_features library.
Install was added recently, so don't take the `0.1.0` release but
the current `master` until a new version is published.
* Combined llvm and llvm-lld: removed the separate llvm-lld package
and added llvm-lld as an optional add on to the llvm package (the
way several other llvm tools are maintained e.g. lldb)
* Added more lld hashes to llvm package
* The 'CppBackend' target doesn't exist for version 3.9.0 or later
so exclude it for later versions
* Was incorrectly specifying 'sparc' as a target for the 'sparc'
architecture - needed to specify 'Sparc'
* Fix issue #7248 building llvm: don't make the LLVMDemangle target
for llvm < 4.0.0
* No longer need to patch CMake. Using CMAKE_CXX_FLAGS to include BLAS/LAPACK/MKL header files properly.
* Backport two patches to QMCPACK versions prior to 3.3.0: https://github.com/QMCPACK/qmcpack/pull/621, https://github.com/QMCPACK/qmcpack/pull/623
* Insufficient to include lapack_dir in CMAKE_CXX_FLAGS, CMAKE_C_FLAGS is also needed.
* Make patched Espresso a default variant instead of a hard dependency. This is easier on computer architectures where Espresso is hard to build.
* Fix patching with QE variant. Now using correct form of patch command.
* Add QMCPACK v3.4.0
* Backport patch to QMCPACK versions prior to 3.3.0: https://github.com/QMCPACK/qmcpack/pull/643
Yaml-cpp hasn't tagged a release in over 2 years, yet they have fixed
many things and now have the ability to use find_package in CMake.
Since we use this feature in Nalu, we require the latest yaml-cpp
until they tag a new release. I have also deprecated the now
unnecessary ENABLE_INSTALL flag.
* Added a package for the MDAnalysis toolkit.
* Adding a package for the Python virtualenvwrapper pacakge. Included
dependent virtualenv-clone and stevedore packages. Updated py-pbr with
a new version to support this.
* Added extra necessary dependencies and fixed the file download paths.
* Added a package for the MDAnalysis toolkit.
* Added a new package for pygpu, which is the python front end of the
libgpuarray. Additionally changed the dependency for theano so that
it properly picks up the pygpu library.
* Added the libcheck package. Fixed flake8 errors in py-pygpu recipe
and removed spurious dependency on cudnn for libgpuarray.
The edit phase of cbench was used to set environment variables. Though
this works, the variables set this way are not dumped to build.env.
This commit fixes the issue by setting those variables in the
`setup_environment` function.
* [SUNDIALS] Add the 'headers' and 'libs' properties, plus a couple of
small tweaks.
* [SUNDIALS] Revert incorrectly changed conflicts() directive. Fix style.
Fixes#5189
When working with non-normalized paths containing ".." on some
file systems, Spack was found to encounter a permission error when
writing to the path. This normalizes a path written by the
intel-parallel-studio package and also normalizes all paths
written by the license install hook (for all packages) to avoid
this issue for intel-parallel-studio.
Adds the first stable API release of ADIOS2, v.2.1.0.
Also adds a missing `pybind11` CMake flag for proper Python
selection (needed in both the new and previous version).
To accommodate build systems on Darwin which look for glibtool/ize,
#7060 attempted to provide glibtool/ize symlinks for libtool/ize
but accidentally created the same symlink twice. #7073 reverted this
and replaced libtool/ize with glibtool/ize on Darwin. This led to
#7163 since AutotoolsPackages depend on the presence of the 'libtool'
binary, so this returns to the approach of #7160 but makes the
correct symlinks.
XBraid installs `libbraid.a`, but the default `libs` method
implementation will search for `libxbraid`, which does not exist. This
commit fixes the behavior of the `libs` method for the `xbraid`
package by overriding package's `libs` method.
Prior to this commit, running `spack module refresh` with `gdbm`
installed throws the warning:
```console
==> Warning: Could not write module file [/Users/oxberry1/spack/share/spack/lmod/darwin-sierra-x86_64/Core/gdbm/1.14.1.lua]
==> Warning: --> global name 'spack_cc' is not defined <--
```
This warning is repeated for every `gdbm` installation in Spack.
The cause of the issue seems to be the same as in spack/spack (#6089):
using `spack_cc`, `spack_cxx`, or similar inside `configure_args`
causes the warnings to throw when module files are generated.
Moving the use of `spack_cc` into `setup_environment` seems to fix the
problem, even though it's a bit of a kludge.
Running `spack module refresh -m lmod --delete-tree -y` throws the
following warning:
```console
==> Warning: Could not write module file [/Users/oxberry1/spack/share/spack/lmod/darwin-sierra-x86_64/openblas/0.2.20-ibhtl5q/clang/5.0.1/ipopt/3.12.9.lua]
==> Warning: --> global name 'prefix' is not defined <--
```
This warning arises because the variable expansions in
`spack.modules.BaseFileWriter` occur at module/package scope. Even
though `prefix` is an argument to `install` methods in e.g.,
`MakefilePackage`, so using this argument within package methods is
legal, doing so defeats the introspection logic in
`spack.modules.BaseFileWriter`. Replacing `prefix` with `self.prefix`
resolves the problem, because the introspection logic in
`spack.modules.BaseFileWriter` can use introspection to query IPOPT's
prefix.
