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beast1: new package (#7544)

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* beast1: new package

* beast1: taking suggestion
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xfzhao 2018-03-23 15:19:26 -05:00 committed by Adam J. Stewart
parent 2970a50ef6
commit 9799e6062d
1 changed files with 47 additions and 0 deletions
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var/spack/repos/builtin/packages/beast1/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Beast1(Package):
"""BEAST is a cross-platform program for Bayesian
analysis of molecular sequences using MCMC."""
homepage = "http://beast.community/"
url = "https://github.com/beast-dev/beast-mcmc/releases/download/v1.8.4/BEASTv1.8.4.tgz"
version('1.8.4', 'cb8752340c1f77a22d39ca4fe09687b0')
depends_on('java', type='run')
def setup_environment(self, spack_env, run_env):
run_env.set('BEAST1', self.prefix)
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('examples', prefix.examples)
install_tree('images', prefix.images)
install_tree('lib', prefix.lib)
install_tree('doc', prefix.doc)