Commit graph

13081 commits

Author SHA1 Message Date
manifest
506d2795a8
py-inheritance: added new package at v0.1.5 (#19337) 2020-10-16 17:07:23 +02:00
iarspider
d34b612052
diffutils: added support for external detection (#19344) 2020-10-16 16:10:07 +02:00
t-nojiri
4b9701a195
opium : convert to be an autotools package (#18708) 2020-10-16 12:08:59 +02:00
dunatotatos
cdeecf2507
GenomeWorks: added new package at v0.5.3 (#19263) 2020-10-16 10:17:32 +02:00
Harsh Bhatia
878e89ecea
faiss: added new package at v1.6.3 (#17290)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16 09:47:22 +02:00
Greg Becker
7a6268593c
Environments: specify packages for developer builds (#15256)
* allow environments to specify dev-build packages

* spack develop and spack undevelop commands

* never pull dev-build packges from bincache

* reinstall dev_specs when code has changed; reinstall dependents too

* preserve dev info paths and versions in concretization as special variant

* move install overwrite transaction into installer

* move dev-build argument handling to package.do_install

now that specs are dev-aware, package.do_install can add
necessary args (keep_stage=True, use_cache=False) to dev
builds. This simplifies driving logic in cmd and env._install

* allow 'any' as wildcard for variants

* spec: allow anonymous dependencies

raise an error when constraining by or normalizing an anonymous dep
refactor concretize_develop to remove dev_build variant
refactor tests to check for ^dev_path=any instead of +dev_build

* fix variant class hierarchy
2020-10-15 17:23:16 -07:00
Omar Padron
2ed39dfd8e
make opengl and spectrum-mpi set has_code = False (#19133)
* make opengl and spectrum-mpi set has_code = False
2020-10-15 15:13:21 -04:00
Sreenivasa Murthy Kolam
0b6f995187
Update migraphx for rocm 3.8 (#19300)
* update to migraphx for rocm_3.7.0 and rocm_3.8.0

* fix flake8 errors

* address review comments

* review changes

* removed the msgpack,mentioned twice
2020-10-15 10:41:48 -05:00
darmac
9240058c0d
Add new package: bdii (#18732)
* Add new package: bdii

* bdii: refine dependents
2020-10-15 16:47:06 +02:00
darmac
a9d25ea01b
py-acme-tiny: added new package at v4.0.4 (#18808) 2020-10-15 16:14:13 +02:00
Jean-Paul Pelteret
c1f2d6a73b
GiNaC: added new package at v1.7.11, updated cln (#15730) 2020-10-15 16:03:12 +02:00
Tom Payerle
d034d622c0
papi: restrict +sde to @6.0.0: (#19290)
Software defined events (SDE) appear to have been introduced only in
@6.0.0 (see e.g. http://icl.utk.edu/papi/software/view.html?id=275)
See #19289
2020-10-15 15:44:10 +02:00
Tom Payerle
9a554769a3
pexsi: add openmp flags to fortran flags if dependencies use OpenMP (#19274)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-15 15:41:58 +02:00
Cody Balos
a9dfa89c89
xbraid: added v2.3.0 and v3.0.0 (#19280) 2020-10-15 15:38:05 +02:00
Adam J. Stewart
d1423e21fb
CMake: added v3.18.3 and v3.18.4 (#19302) 2020-10-15 15:28:09 +02:00
manifest
4b9bdea26b
blasr-libcpp: improved setup_run_environment (#18038)
Added non standard paths to LD_LIBRARY_PATH
2020-10-15 15:26:39 +02:00
Thomas Gruber
f45e8ac70b
LIKWID: added v5.0.2, new depends_on clauses and a patch for Lua (#19164) 2020-10-15 15:20:04 +02:00
G-Ragghianti
1bf87447ad
Blaspp: added v2020.10.0, v2020.09.0, reworked recipe (#19311) 2020-10-15 14:58:31 +02:00
Hadrien G
298e18dbf3
acts: added v1.02.0 (#19305) 2020-10-15 14:13:55 +02:00
Axel Huebl
d1bfc426b0
Py-Pillow: added v8.0.0 (#19320) 2020-10-15 14:13:04 +02:00
Erik Schnetter
e4c1cb380b
amrex: Add CUDA variant (#19306)
* amrex: Add CUDA variant

* amrex: require at least cuda 9
2020-10-14 21:24:20 -05:00
Jean-Paul Pelteret
50c7bc8cfd
deal.II: Fix broken include and library path concatenation (#19315) 2020-10-14 21:23:55 -05:00
Nichols A. Romero
71d2ce7403
Removing f18 package. (#19307) 2020-10-14 13:44:22 -05:00
vvolkl
a9bc5f7751
[delphes] new version, new env var (#19304) 2020-10-14 11:55:44 -05:00
Tomoki, Karatsu
48b14c4ac6
uqtk: Add version and fixes for Fujitsu compiler. (#19288)
* uqtk: Add version and fixes for Fujitsu compiler.

* Fixed order of versions.

* Add condition to execute function.
2020-10-14 11:44:27 -05:00
Nichols A. Romero
2651fab8d1
Flang NVidia offload fix (#18965)
* Make release_90 preferred version.

* Be more explicity about CUDA dependencies.

* Remove duplicate CUDA dependency in Flang package and introduce nvptx variant.

* Fix nvptx variant message.
2020-10-14 11:35:25 -05:00
Chuck Atkins
383b5b70cc
adios2: Remove rogue zmq dependency for ssc engine (#19293) 2020-10-14 00:47:15 -07:00
Edoardo Aprà
c60cbab215
new release 7.0.2 (#19297) 2020-10-13 23:06:21 -05:00
Justin S
721efc62d1
busco: add 4.1.3 (#19296) 2020-10-13 23:05:43 -05:00
David M. Rogers
beeab6e1b9
Make DEAL_II_MPI_WITH_CUDA_SUPPORT conditional on mpi package option. (#19279) 2020-10-13 13:23:04 -05:00
hhoeflin
74a30bc624
Update neovim build and libvterm (#19015)
* Fixed wrong link to version 0.0.0 and add hash for version 0.1.4

* Fix failing build for neovim@master and neovim@stable and add hash for version 0.4.0

* Fix flake8 issues

* Removed unnecessary newline

* Depedency conditions restriction to neovim >= 0.2.0 as previous versions fail to compile

* Removed build dependency on git

* Removed master from all conditions
2020-10-13 13:18:08 -05:00
Massimiliano Culpo
b84812256d
autotools: add attribute to delete libtool archives .la files (#18850)
* autotools: add attribute to delete libtool archives .la files

According to Autotools Mythbuster (https://autotools.io/libtool/lafiles.html)
libtool archive files are mostly vestigial, but they might create issues
when relocating binary packages as shown in #18694.

For GCC specifically, most distributions remove these files with
explicit commands:

https://git.stg.centos.org/rpms/gcc/blob/master/f/gcc.spec#_1303

Considered all of that, this commit adds an easy way for each
AutotoolsPackage to remove every .la file that has been installed.
The default, for the time being, is to maintain them - to be consistent
with what Spack was doing previously.

* autotools: delete libtool archive files by default

Following review this commit changes the default for
libtool archive files deletion and adds test to verify
the behavior.
2020-10-13 09:15:48 -07:00
vvolkl
c40de7c895
[acts] fix boost dependency (#19286)
@HadrienG2  the dependency is definitely there in all versions, but I did not check if the variants need to be adapted for the newer variants of acts
2020-10-13 10:09:14 -05:00
Toyohisa Kameyama
edfbfc8962
ppopen-math-vis: change download site to github. (#19285) 2020-10-13 10:08:21 -05:00
darmac
e65bb455eb
talloc: update version and dependencies (#18817) 2020-10-13 09:58:41 -05:00
darmac
4402506527
Add new package: py-rbtools (#18963)
* Add new package: py-rbtools

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-13 09:57:50 -05:00
darmac
8e1e6585c4
Add new package: dnstracer (#18933)
* Add new package: dnstracer

* refine package class
2020-10-13 09:55:55 -05:00
darmac
97be7e7dd3
Add new package: libopts (#18836)
* Add new package: libopts

* fix flake8 error
2020-10-13 09:55:09 -05:00
darmac
d302d546a4
Add new package: py-eg (#18885)
* Add new package: py-eg

* refine dependency
2020-10-13 09:54:35 -05:00
darmac
3834bdfc27
Add new package: symlinks (#18925)
* Add new package: symlinks

* refine edit()
2020-10-13 09:54:06 -05:00
darmac
3b5cdf2f68
Add new package: xfsprogs (#18829)
* Add new package: xfsprogs

* remove lib64 path
2020-10-13 09:52:33 -05:00
Chuck Atkins
6084529eff
paraview: Fix external dependencies for various versions (#19236) 2020-10-13 09:51:23 -05:00
darmac
08e30a21b0
py-adb-enhanced: new package at v2.5.4 (#19010) 2020-10-13 16:14:31 +02:00
darmac
5bddc652c5
Add new package: byteman (#18736) 2020-10-13 14:19:47 +02:00
Toyohisa Kameyama
9f6086e5c8
ppopen-math-mp: change download site to github. (#19284) 2020-10-13 10:31:21 +02:00
Adam J. Stewart
021cad1521
zip: add patches (#18994)
* zip: add patches

* Add .patch suffix

* Simplify build targets
2020-10-13 09:47:25 +02:00
Ganesh Kumar
cfd69da839
mivisionx: added package at v3.8.0 (#19042) 2020-10-13 09:30:53 +02:00
Toyohisa Kameyama
ae5c0054b3
ppopen-at: change download site to github (#19282) 2020-10-13 08:36:03 +02:00
Pieter Ghysels
cb9e0d5297
STRUMPACK: added v5.0.0 (#19283) 2020-10-13 08:21:59 +02:00
Adam J. Stewart
cb4e30b477
Python: add both lib and lib64 to PYTHONPATH (#18523) 2020-10-12 17:59:20 -07:00
Tomoki, Karatsu
82a224b0da
octave: Specify fortran calling-convention for Fujitsu compiler. (#19218) 2020-10-12 16:53:37 -05:00
Michael Kuhn
a062517d3d
gcc: Restrict permitted cuda versions (#19267)
gcc seems to use sm_30, which has been dropped in cuda@11.
2020-10-12 14:15:51 -05:00
Tom Payerle
7c12ca1d83
m4: Fix issue compiling with new intel compilers (#18894) (#19273)
Original version added --no-gcc to CFLAGS when compiling with intel
compilers.  This does not appear to be needed and indeed causes problems
(see #18894) with newer intel compilers; I have modified so it is not
added for intel@19: (I confirmed it is needed/works for intel@20, based
on comments in #18854 looks like holds for intel@19 as well).

(Also fix old formatting issue flake8 was complaining about)
2020-10-12 14:13:11 -05:00
Mark Olesen
7a562d4045
openfoam: update for version 20.06 patch 2020-10-12 (#19275)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-10-12 14:09:32 -05:00
Joe Koning
7a8974c2d8
Update py-redis (#19063)
* Update of py-redis for merlin-1.7.5

* Add hiredis variant and python versions for 3.5.x versions.

* Update var/spack/repos/builtin/packages/py-redis/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-12 14:05:09 -05:00
Evan Bollig
7b0e628016
Added slurm version 20-02-4-1 and support to build slurmrestd (#19249)
* Added slurm version 20-02-4-1 and support to build slurmrestd

* cleanup formatting

* cleanup libjwt to pass unittests

* missed one boilerplate

* hacking a pass in unittests

* defer to default install routine in libjwt
2020-10-12 13:52:23 -05:00
Dr. Christian Tacke
7a28b91bb8
singularity: added v3.6.3 (#19272) 2020-10-12 19:28:28 +02:00
darmac
b50fe3cb6b
evemu: added new package at v2.7.0 (#19013) 2020-10-12 18:14:55 +02:00
darmac
7083a542b6
libnetfilter-conntrack: new package at v1.0.4 (#19012) 2020-10-12 18:13:29 +02:00
Thomas Madlener
bead81fab5
[whizard] Disable parallel builds to avoid race condition (#19270) 2020-10-12 17:07:21 +02:00
Massimiliano Culpo
2399c2e78d
autotools: refactor search paths for aclocal in its own method (#19258)
This commit refactors the computation of the search path
for aclocal in its own method, so that it's easier to reuse
for packages that need to have a custom autoreconf phase.

Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
2020-10-12 16:35:52 +02:00
Harmen Stoppels
2d9f692d6c
libamd_comgr.so.1 is linked to by libamdhip64.so.3, so it should be a link dep (#19025) 2020-10-12 16:28:48 +02:00
darmac
99278d9863
rng-tools: added new package at v6.10 (#19011) 2020-10-12 16:23:35 +02:00
darmac
c2517a31bf
openwsman: added new package at v2.7.0 (#19009) 2020-10-12 16:20:35 +02:00
darmac
89cd3cfdb7
glib-networking: added new package at v2.66.0 (#19008) 2020-10-12 16:19:57 +02:00
darmac
39ded3fa0f
ecdsautils: new package at v0.3.2 (#19007) 2020-10-12 16:18:32 +02:00
darmac
c49e66a06e
conserver: added new package at v8.2.5 (#18988) 2020-10-12 15:17:32 +02:00
darmac
e929cb4d51
cc65: added new package at v2.18 (#18989) 2020-10-12 15:03:46 +02:00
darmac
93f8b14de5
console-bridge: added new package at v1.0.1 (#18986) 2020-10-12 14:39:41 +02:00
Dr. Christian Tacke
fe984b994d
root: added more 6.20.* versions, switch preferred (#19265) 2020-10-12 14:12:19 +02:00
darmac
3a914f83c3
cmark: added new package at v0.29.0 (#18985) 2020-10-12 14:07:10 +02:00
Glenn Johnson
9915ce0315
Change how CUDA variants are handled for libbeagle (#18984)
- Override the cuda_arch variant setup, with multi=False to ensure one
  value is selected
- Use a conflicts statement rather than InstallError
2020-10-12 14:06:26 +02:00
Glenn Johnson
bd8c73ef18
Change how CUDA variants are handled (#18983)
- Override the cuda_arch variant setup, with multi=False to ensure one
  value is selected
- Use a conflicts statement rather than InstallError
2020-10-12 14:00:56 +02:00
Frédéric Simonis
3107f0367b
precice: added v2.1.1 (#19264) 2020-10-12 13:25:51 +02:00
darmac
023db4696e
asciidoc-py3: new patckage at v9.0.2 (#18920) 2020-10-12 13:23:48 +02:00
Glenn Johnson
eb03e648ec
Fix r-devtools package (#18981)
The r-devtools package was not installable due to a few issues.

- The rstudioapi spec was for 0.11.0 but the rstudioapi version is
  actually 0.11. This caused an error during concretization.
- Set r-usethis to depend on rlang@0.4.3: rather than r-lang@0.4.3.
- Set r-usethis to depend on r-gh@1.1.0: rather than r-gh@1.1.0.
- Added version r-gh-1.1.0 as it is not currently present in spack.
2020-10-12 13:22:41 +02:00
David M. Rogers
d431fcd904
Added CUDAHOSTCXX variable needed to compile with cuda and mpi. (#19254)
* Added CUDAHOSTCXX variable needed to compile with cuda and mpi.

* Added guard for setting CUDAHOSTCXX with MPI.

* Acceptable working version of dealii+cuda+mpi.
2020-10-12 02:28:06 -07:00
h-denpo
88794f56ed
itstool: modify depends_on('libxml2+python', type=('build', 'run')) (#19020) 2020-10-12 10:29:30 +02:00
Adam J. Stewart
1b9dce6b26
Python: add v3.9.0 (#19260) 2020-10-11 21:16:51 -07:00
Adam J. Stewart
759e8ee4c2
CUDA: update maintainers (#19262) 2020-10-11 21:11:17 -07:00
Toyohisa Kameyama
683ecb3f6e
mpifileutils: Add patch for aarch64. (#18724)
* mpifileutils: Add patch for aarch64.

* Update patch and limit version for apply patch.
2020-10-11 18:49:38 -05:00
Jean-Paul Pelteret
fe239c83fc
deal.II: Further modernisation and improvements (#19253) 2020-10-11 15:48:09 -04:00
Daniel Arndt
46cae921b9
Update datatransferkit (#19239)
Conflicts:
	var/spack/repos/builtin/packages/datatransferkit/package.py
	var/spack/repos/builtin/packages/xsdk/package.py
2020-10-11 13:27:54 -05:00
Roberto Di Remigio
7f46c11fda
Update XCFun with stable releases (#18784)
* Update XCFun with stable releases

* Fix lint
2020-10-10 21:14:15 -05:00
darmac
0ed8bbe765
Add new package: libgssglue (#18774) 2020-10-10 21:11:31 -05:00
darmac
be530949bb
Add new package: pinfo (#18806) 2020-10-10 21:11:03 -05:00
darmac
794f2c7510
Add new package: xdelta (#18827) 2020-10-10 21:09:55 -05:00
tcojean
a691e75af3
Ginkgo: new version and HIP support (#18842)
* Bump the Ginkgo version and add HIP support.

* Add the HIP variant to Ginkgo.

* Make HIP support work, check C++ compatibility.
2020-10-10 21:08:58 -05:00
Tom Payerle
793ffd8d9c
cpio: Fix issue compiling with newer intel compilers (#18854) (#18855)
* cpio: Fix issue compiling with newer intel compilers (#18854)

Do not add --no-gcc for recent intel compilers (e.g. 20.x)

* cpio: Remove --no-gcc flag for intel@19 as well as intel@20

Based on comments from @nrichart, removing --no-gcc option for intel@19
as well as intel@20
2020-10-10 21:07:04 -05:00
Toyohisa Kameyama
a408400619
audacious: add link type build to glib. (#18884) 2020-10-10 21:05:18 -05:00
Kelly (KT) Thompson
933aacf7b6
Provide draco-7_8_0. (#18947)
* Provide draco-7_8_0.

+ Also provide a patchfile for draco-7_6_0 to support CrayPE builds.
+ Version 7.8.0 has a new variant `+caliper`.
+ Sort dependencies alphabetically after grouping by required and optional.

* Remove patchfile that is no longer needed.

+ Newer versions of draco do not require this patch.
+ Older versions of draco are not supported for spectrum-mpi.

* Change new variant +caliper to default to False.
2020-10-10 21:02:00 -05:00
darmac
e8306e8f22
Add new package: less (#18952) 2020-10-10 21:00:54 -05:00
darmac
ec6f13aefa
Add new package: lsscsi (#18953) 2020-10-10 20:59:21 -05:00
darmac
6e4cf08984
Add new package: libnftnl (#18954) 2020-10-10 20:58:53 -05:00
darmac
edfac1a04f
Add new package: authd (#18955) 2020-10-10 20:58:29 -05:00
darmac
ff5d95da95
Add new package: backupninja (#18957) 2020-10-10 20:55:58 -05:00
darmac
3a59057f74
Add new package: universal-ctags (#18962) 2020-10-10 20:55:33 -05:00
darmac
28564620f6
Add new package: vtable-dumper (#18964) 2020-10-10 20:54:43 -05:00
Derek Ryan Strong
c9bee59bc3
pandoc: add variant for texlive (#18967)
* pandoc: add variant for texlive

Modifies the pandoc package by adding a variant for texlive, which is only needed for PDF output. Enables this variant by default.

* Fix whitespace
2020-10-10 20:53:51 -05:00
Toyohisa Kameyama
6383ef808d
poplpler: fix patch for 0.90.1. (#18969) 2020-10-10 20:53:05 -05:00