Commit graph

13081 commits

Author SHA1 Message Date
wspear
92bbc2e789
Added tau version 2.29.1 hash (#19329)
* Added tau version 2.29.1 hash

* Update var/spack/repos/builtin/packages/tau/package.py

Make version name match branch name (master)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 16:25:58 -05:00
Glenn Johnson
449604bfe8
add updated version of py-xopen (#19375)
* add updated version of py-xopen

* Update dependency constraints

* Further refine the python constraints

Also, put them all together.

* Put python constraints at top of list
2020-10-19 16:15:20 -05:00
Sergey Kosukhin
75bfdc7335
netcdf-fortran: support for Cray compiler (#18971) 2020-10-19 16:12:09 -05:00
Glenn Johnson
c31e96dcd7
New package - pulseaudio (#19378)
This PR adds the pulseaudio package and the speexdsp package as a
dependency. In addition, this PR adds a `libs` property to the libtool
package.
2020-10-19 16:11:45 -05:00
Glenn Johnson
95b9875e95
New package - Gate (#19377)
* New package - Gate

This PR adds the Gate package as well as the ITK dependency.

* Fix flake 8 errors

* Be more explicit with CMake options

Make sure Cmake values related to variants are explicitly set to either
ON/OFF.

The ITK_USE_MKL flag will turn on the following:
- USE_FFTWD=ON
- USE_FFTWF=ON
- USE_SYSTEM_FFTW=ON

Since the package depends on fftw-api, those options will always be set.
2020-10-19 16:07:47 -05:00
Glenn Johnson
152144f17a
add updated version of trimgalore (#19376) 2020-10-19 14:53:12 -05:00
Glenn Johnson
302c69eb55
Add updated version of fastqc (#19372) 2020-10-19 13:57:43 -05:00
Dr. Christian Tacke
765b41fd34
util-linux: Add version 2.33.1 (#19370) 2020-10-19 13:27:40 -05:00
Robert Pavel
c3f3cea516
Added thrust@1.8.3 (#19368)
Added version 1.8.3 to thrust
2020-10-19 13:26:58 -05:00
Sebastian Schmitt
aef1ff7ec5
Remove version in extends (#19366)
extends expects the package name only.

Cf. #12480.
2020-10-19 13:26:37 -05:00
Andrew W Elble
0df70e217f
A collection of tensorflow fixes and updates (#19371)
* A collection of tensorflow fixes and updates

* tensorflow 2.3.1 requires the workaround for external protobuf as well
* Update tensorflow-estimator to 2.3.0
* Update tensorboard to 2.3.0
* Update tensorboard-plugin-wit to use actual releases
* Patch that potentially fixes #16073

* add myself to maintainer list
2020-10-19 13:15:49 -05:00
G-Ragghianti
9cd2ab48ab
Slate package: resolves missing header issue (#19032)
* Changed make command to support new slate build variable 'blas='

* Updated to use package's "make install" target

* Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant.

* Fixed problem caused by systems which use a non-bash /bin/sh

* Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas).

* Fixed formating

* Changed to MakefilePackage and cleaned up make argument generation

* Implemented "edit" method

* Removed blank line

* Sqitched to using mpi compiler wrapper variables

* Update var/spack/repos/builtin/packages/slate/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 12:16:10 -05:00
darmac
761b79e34f
r-rgeos: fix build error (#19360) 2020-10-19 10:33:32 -05:00
Amjad Kotobi
432772dbb6
openssh: new version 8.4p1 (#19358) 2020-10-19 10:32:43 -05:00
Amjad Kotobi
cbd100819a
anaconda3: new versions (#19357) 2020-10-19 10:31:58 -05:00
darmac
68b05b43e0
Add new package: py-mido (#19355) 2020-10-19 10:22:08 -05:00
darmac
b4f254df5d
Add new package: py-cekit (#18813)
* Add new package: py-cekit

* refine dependencies
2020-10-19 10:21:08 -05:00
darmac
ced73019de
Add new package: tpm2-tss (#18824)
* Add new package: tpm2-tss

* remove patch(), there's no need to use it
2020-10-19 10:14:51 -05:00
darmac
78986c5575
Add new package: percona-server (#18818) 2020-10-19 10:13:55 -05:00
darmac
d48b186500
py-coapthon3: added new package at v1.0.1 (#18990)
* Add new package: py-coapthon3

* remove mistake version
2020-10-19 11:42:48 +02:00
darmac
3807ceec0b
premake-core: added new package at v5.0.0-alpha15 (#18807) 2020-10-19 10:39:40 +02:00
darmac
9799c553e8
wsmancli: added new package at v2.6.0 (#18906) 2020-10-19 10:30:41 +02:00
darmac
fb2aba6f0f
junit4: added new package at v4.13 (#18769)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 10:11:00 +02:00
ketsubouchi
05ffbbc0be
butterflypack: Support fj Fortran (#17514)
* butterflypack: Support fj Fortran

* butterflypack: split patch

* butteflypack: add ieee_support_nan
2020-10-18 23:16:19 -05:00
Massimiliano Culpo
008b77a2a7
nag: added external detection capabilities (#18153) 2020-10-18 23:12:05 -05:00
Robert Blake
1b558aaa81
mpich: Add external find support (#18330)
* Adding external support to mpich

* Removing debugging print statement.
2020-10-18 23:09:13 -05:00
Omar Padron
747151c3b7
remove package: libglvnd (#18363) 2020-10-18 23:08:03 -05:00
Miranda Mundt
29e2196340
Add new package: vvtest (#18701)
* Adding vvtest to spack

* Fixing flake8 failures

* Adding suggestions

* Removing unnecessary import

* Incorporating suggested changes
2020-10-18 23:06:18 -05:00
darmac
e88e6466e2
Add new package: soci (#18816) 2020-10-18 23:04:22 -05:00
arjun-raj-kuppala
761348a3af
AMD ROCm rccl - numa.h issue fix (#19317) 2020-10-18 23:01:25 -05:00
Chuck Atkins
7d546a0145
Dataviz sdk update dep variants (#19327)
* ecp-io-sdk: Add preferred variants to all dependencies

* ecp-viz-sdk: Add preferred variants to all dependencies
2020-10-18 22:59:34 -05:00
Massimiliano Culpo
104eee7a7e
Revert "ipopt: Add condition for 'aarch64' to Ipopt/config.guess (#13499)" (#19341)
This reverts commit e7f574aad5.
2020-10-18 22:59:18 -05:00
darmac
ea7273a93e
Add new package: e2fsprogs (#18763)
* Add new package: e2fsprogs

* refine setup_run_environment()
2020-10-18 22:58:34 -05:00
t-nojiri
d16a980640
vdt: Removed the -mfpu=neon option for aarch64. (#18134) 2020-10-18 22:57:46 -05:00
t-nojiri
18391eef58
coevp: use libquadmath only x86_64 and ppcle. (#18130) 2020-10-18 21:07:04 -05:00
t-nojiri
567caafc58
dmtcp: Fix for aarch64 (#19246) 2020-10-18 20:24:51 -05:00
Adam J. Stewart
02575cb3bb
bash: add ssh flag (#18992)
* bash: add flag on macOS

* Add flag unconditionally
2020-10-18 17:40:32 -04:00
Adam J. Stewart
c3f8df7c52
py-scipy: added v1.5.3 (#19353) 2020-10-18 16:15:23 +02:00
Stephen Hudson
c8581989d5
Update libensemble to v0.7.1 (#19349)
* Update libensemble to v0.7.1

* Update var/spack/repos/builtin/packages/py-libensemble/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-17 19:00:54 -05:00
Nichols A. Romero
8619e5b5ab
Removing classic flang. (#19350) 2020-10-17 15:27:09 -05:00
Ryan Mast
1a63baef4d
helics: Add version 2.6.1 (#19348) 2020-10-17 15:23:40 -05:00
Nichols A. Romero
1a6c5ff541
Add LLVM 11.0.0 (#19309)
* Add LLVM 11.0.0

* This longdouble patch was merged in.
2020-10-16 23:02:57 -05:00
manifest
89332361ba
gemini dep py-geneimpacts + (#19334) 2020-10-16 16:32:59 -05:00
iarspider
da71e9e88e
Fix tar detection (missing import: re) (#19338)
Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16 16:31:40 -05:00
iarspider
7296f8c628
Add external package support to xz (#19339)
* Add external package support to xz

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16 16:30:57 -05:00
iarspider
e9da8d1633
Add external package support to bzip2 (#19343)
* Add external package support to bzip2

* Flake-8

* Flake-8 part 2

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16 16:28:31 -05:00
Scott McMillan
a612be1c98
New compiler: nvhpc (NVIDIA HPC SDK) (#19294)
* Add nvhpc compiler definition: "spack compiler add" will now look
  for instances of the NVIDIA HPC SDK compiler executables
  (nvc, nvc++, nvfortran) in supplied paths
* Add the nvhpc package which installs the nvhpc compiler
* Add testing for nvhpc detection and C++-standard/pic flags

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2020-10-16 14:04:27 -07:00
iarspider
78f349c635
ghostscript: add external package detection (#19346)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16 20:13:39 +02:00
Pieter Ghysels
f0b1f93d12
Fix for MKL ScaLAPACK (#19336) 2020-10-16 11:08:38 -05:00
darmac
01cf1d79db
parquet-format: added new package at v2.8.0 (#18544)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16 17:54:42 +02:00