Commit graph

9316 commits

Author SHA1 Message Date
Adam J. Stewart
7af8c206ac
Add patches and missing dependency to bash (#13084) 2019-10-10 12:48:49 -05:00
Adam J. Stewart
c131a725af
Add mpfr 4.0.2 (#13091) 2019-10-10 12:48:32 -05:00
Adam J. Stewart
06dffaefed
Add tar 1.32 (#13099) 2019-10-10 12:48:16 -05:00
Jannek Squar
02564ef4ab sublime-text: New version, adapt install process (#13074)
* Added new version, reworked installation process

* Removed explicit addition to PATH
2019-10-10 12:13:00 -05:00
Adam J. Stewart
e925dbcefe
Add expat 2.2.9 (#13085) 2019-10-10 12:10:48 -05:00
Adam J. Stewart
f940e8616c
Add gettext 0.20.1 (#13086) 2019-10-10 12:10:19 -05:00
Adam J. Stewart
4d2b300da0
Add isl 0.21 (#13087) 2019-10-10 12:10:03 -05:00
Adam J. Stewart
15d7e2efd5
Add libiconv 1.16 (#13088) 2019-10-10 12:09:46 -05:00
Adam J. Stewart
c570c09cbf
Add libsigsegv 2.12 (#13089) 2019-10-10 12:09:28 -05:00
Adam J. Stewart
db8178d99a
Add latest openssl releases (#13092) 2019-10-10 12:09:02 -05:00
Adam J. Stewart
ace11d857f
Add latest Perl releases (#13093) 2019-10-10 12:08:40 -05:00
Adam J. Stewart
f35c845330
Add pkgconf 1.6.3 (#13094) 2019-10-10 12:08:19 -05:00
Adam J. Stewart
0cf6980437
Add readline 8.0 (#13095) 2019-10-10 12:07:48 -05:00
Adam J. Stewart
4a5bdd1afd
gdbm: https -> http (#13096) 2019-10-10 12:07:24 -05:00
Adam J. Stewart
01b87259e2
ncurses: https -> http (#13097) 2019-10-10 12:07:05 -05:00
Adam J. Stewart
f904e47c4e
Add sqlite 3.30.0 (#13098) 2019-10-10 12:06:44 -05:00
Satish Balay
dd64bdc313 hypre: add compatibility patch for petsc/mfem build failures (#13116) 2019-10-10 09:11:15 -05:00
wspear
a042a7e91e Added new versions to py-tornado (#13080)
* Added new versions to py-tornado

* Removed all but the latest new version
2019-10-10 09:06:01 -05:00
Matthias Wolf
e69efded32 py-line-profiler: add 2.1.2, re-run cython if needed (#13102)
* py-line-profiler: add 2.1.2, re-run cython if needed

See rkern/line_profiler#166.

* Update var/spack/repos/builtin/packages/py-line-profiler/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-10 11:34:50 +02:00
Rob Latham
d93cacfa5c libfabric: new upstream release 1.8.1 (#13053) 2019-10-09 22:24:17 -05:00
wspear
c8289fcd90 Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X (#13078)
* Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X

* Added missing dependencies
2019-10-09 22:23:55 -05:00
wspear
e7e67fdfec Added latest versions to py-traitlets (#13079)
* Added latest versions to py-traitlets

* Added missing dependencies
2019-10-09 22:23:33 -05:00
Francesco Di Natale
4ef64b64d1 Add new versions of py-maestrowf (#13081)
* Addition of 1.1.3 and 1.1.4

* Addition of conditional enum-34 installation.

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Addition of versioning for pyyaml.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Addition of enum34 back to older versions 1.1.3 and below.
2019-10-09 22:23:19 -05:00
Michael Kuhn
2e2b1a5e02 qt: Add 5.13.1 and missing zlib flags (#13109) 2019-10-09 22:22:52 -05:00
Michael Kuhn
469bef880a mysql: Add missing dependencies (#12717)
This also changes the default for cxxstd from 98 to 14 because (at
least) newer versions of mysql do not compile with 98 (tested with
gcc@9).
2019-10-09 14:45:31 -05:00
Toyohisa Kameyama
b0bf528ab3 perl-perlio-gzip: add zlib dependency. (#13060) 2019-10-08 20:51:39 -05:00
Toyohisa Kameyama
529d0f3e37 psmc: add zlib dependency. (#13061) 2019-10-08 20:51:04 -05:00
Toyohisa Kameyama
f1e1693a6a seqprep: add zlib dependency. (#13062) 2019-10-08 20:50:51 -05:00
Toyohisa Kameyama
fdc91a1705 tabix: add zlib dependency. (#13064) 2019-10-08 20:48:37 -05:00
wspear
2e4bcf223c Added py-certipy package. Dependency of py-jupyterhub. (#13068)
* Added py-certipy package. Dependency of py-jupyterhub.

* Changed url to pypi
2019-10-08 20:48:11 -05:00
Nichols A. Romero
2794e52ddd QMCPACK Oct2019 fix buglets (#13069)
* Support different CMake build types correctly.

* LIBXML2 variables no longer used.

* Fix E501 as part of https://github.com/spack/spack/pull/13069
2019-10-08 20:46:15 -05:00
wspear
8de453af54 Fixed hash of version .0.5 and added latest version (.0.7.1) (#13077) 2019-10-08 20:43:44 -05:00
Mark Olesen
e3f69f8ce6 Build older openfoam (#13071)
* adjust building of OpenFOAM 1806 and earlier

- spack now unpacks into spack-src, but earlier OpenFOAM versions
  still expect particular directory names (eg, OpenFOAM-v1806).

  Resolve by creating a symlink during patching.

* replace openfoam 1806 patch with URL version
2019-10-08 20:42:44 -05:00
wspear
6a99b7e262 Added py-pamela package. Dependency of py-jupyterhub. (#13075) 2019-10-08 20:08:32 -05:00
George Hartzell
4377cc7066 Add headsup note re cryptsetup patch for v2.2.2 (#13076) 2019-10-08 20:07:38 -05:00
Phil Carns
66b9009a07 pmdk: added v 1.7 (#13067) 2019-10-08 09:19:27 +02:00
Oliver Breitwieser
9600eb4f5a py-apipkg: Fix mix up of checksums (#13066)
Change-Id: Ibae329c5a6cf7e3741a879612da523e11e3b0ab9
2019-10-07 20:55:22 -05:00
Adam J. Stewart
c8c795e7db watch: added new package (#13044) 2019-10-07 11:11:17 +02:00
Paul
7d0e7efabb Added go 1.13.1 and 1.12.10 (#12977) 2019-10-06 20:22:05 -05:00
Denis Davydov
79bd6bbd04 gnuplot: add 5.2.7 and fix qt dep (#13058) 2019-10-06 14:28:34 -05:00
Matthias Wolf
3d247d9567 freeimage: new package (#13049)
* freeimage: new package

* Address comments.

* Whitespace
2019-10-06 09:20:29 -05:00
Ruben Di Battista
ba72114ba2 unrar: Add package (#12908) 2019-10-06 09:16:25 -05:00
Oliver Breitwieser
f34162a5b8 Add missing py-contextlib2 (#13056)
Change-Id: I8e0a90d4aa2c9f46230a6fe35ce5f4fa44672faf
2019-10-06 09:15:29 -05:00
Denis Davydov
070a536e49 qt: help pick up dependencies (#11172)
* qt: help pick up dependencies

* qt: add 5.12.5
2019-10-05 21:13:38 -05:00
t-karatsu
c6b8d79ea6 Package/fujitsu mpi (#12807)
* fujitsu-mpi: commit new package

* Add homepage.

* * Modified the MPI commands to a simple form.
* Unnecessary processing has been deleted.

* Add conflict for all compilers except the Fujitsu compiler.

* Fix typo.

* Delete versions.

* Delete conditions for specifying the Fujitsu compiler.
2019-10-05 20:58:43 -05:00
Adam J. Stewart
608f732101
expect: fix darwin install name (#13042)
* expect: fix darwin install name

* Fix expect binary as well
2019-10-05 20:37:44 -05:00
Teodor Nikolov
e78ca66087 New package: cxxopts (#13035)
* New package: cxxopts

* Use +unicode instead of unicode=True

- Make the unicode option more explicit

* [cxxopts] Fix white space warnings
2019-10-05 20:36:59 -05:00
Adam J. Stewart
c45ecafd71 procps: new package (#13043) 2019-10-05 11:39:55 +02:00
Federico Ficarelli
a362cf5ff6 grpc: new package (#13054)
* Add grpc@1.23.1

* Let version in url match actual one
2019-10-04 18:42:09 -05:00
Andreas Baumbach
e366f6ba39 llvm: update link to the document explaining codesign (#13047)
Change-Id: I01242cbb43b0c62a659739a5d7e9d998dd27e794
2019-10-04 13:31:43 -07:00
Robert Maynard
b1cdf8bd57 Update the VTK-m package with better defaults and cuda corrections (#12850) 2019-10-04 15:12:58 -04:00
Cody Balos
3cb4547348 superlu-dist: add openmp variant (#13052) 2019-10-04 13:48:56 -05:00
Toyohisa Kameyama
cb89949018 migrate: add zlib dependency. (#13039)
* migrate: add zlib dependency.

* flake8.

* autotools related tools change to build.
2019-10-04 13:14:09 -05:00
Felix Thaler
437236781d LLVM 9.0.0 (#13050) 2019-10-04 09:56:12 -07:00
Massimiliano Culpo
2cd800306d fftw: simplify the recipe and make use of specific targets (#12889)
* fftw: grouped precisions in a single variant

* fftw: simd options are now based on target features and not on variants

* fftw: simplified computing the selected precisions
2019-10-03 22:32:42 -05:00
t-karatsu
46e319ecd4 boost: Use gcc toolset for bootstrap with Fujitsu compiler. (#12876) 2019-10-03 22:20:55 -05:00
Toyohisa Kameyama
938bae1ab6 graphmap: add zlib dependency. (#13031) 2019-10-03 22:20:13 -05:00
Toyohisa Kameyama
b89fa3e01a fastqvalidator: add zlib dependency and Removes erroneous deletes in Chromosome (#13030) 2019-10-03 22:19:58 -05:00
Toyohisa Kameyama
4046e10b95 hapcut2: add zlib dependency. (#13032) 2019-10-03 22:19:43 -05:00
Toyohisa Kameyama
2233a7b493 liblbxutil: Add zlib dependency. (#13033) 2019-10-03 22:19:22 -05:00
Toyohisa Kameyama
bb1d0ff6fb metabat: Add zlib and ncurses dependency. (#13034) 2019-10-03 22:18:55 -05:00
Toyohisa Kameyama
58a64f69e7 muse: add zlib dependency. (#13040) 2019-10-03 22:18:27 -05:00
Toyohisa Kameyama
c97be22ff5 ngmlr: add zlib dependency. (#13041) 2019-10-03 22:18:12 -05:00
Andreas Baumbach
4e7ea627c8 fix ipykernel dependency, newer versions are python3-only (#13019)
* fix ipykernel dependency, newer versions are python3-only

* Update var/spack/repos/builtin/packages/py-ipykernel/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-ipykernel/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-03 22:17:16 -05:00
George Hartzell
882843974b Update cctools to v7.0.18 (#13037)
- add version/checksum info for v7.0.18
- update checksum for v6.1.1 to use sha256, while I have the editor
  open...
2019-10-03 18:57:20 -05:00
Owen Solberg
bef702d0f3 updated manta checksum (#13038) 2019-10-03 18:23:47 -05:00
Adam J. Stewart
69acb024a5
Add py-flye 2.6 (#13025) 2019-10-03 10:32:00 -05:00
Adam J. Stewart
dac34147c0 Add EasyBuild 4.0.0 (#13024)
* Add EasyBuild 4.0.0

* Update homepage, remove no longer required deps

* Replace version ranges with fixed versions
2019-10-03 16:48:42 +02:00
Chuck Atkins
b973f038fd
Update ECP Data & Vis SDK packages (#13027)
* ecp-io-sdk: Add faodel and sort variants

* ecp-viz-sdk: Re-enable catalyst, sort variants, turn on by default

* ecp-io-sdk and ecp-viz-sdk: Fix dependency variants
2019-10-03 10:05:02 -04:00
Massimiliano Culpo
76b9c56110 Remove support for generating dotkit files (#11986)
Dotkit is being used only at a few sites and has been deprecated on new
machines. This commit removes all the code that provide support for the
generation of dotkit module files.

A new validator named "deprecatedProperties" has been added to the
jsonschema validators. It permits to prompt a warning message or exit
with an error if a property that has been marked as deprecated is
encountered.

* Removed references to dotkit in the docs
* Removed references to dotkit in setup-env-test.sh
* Added a unit test for the 'deprecatedProperties' schema validator
2019-10-02 22:15:01 -07:00
Miroslav Stoyanov
b11984767b added tasmanian version 7.0 to spack (#13003) 2019-10-02 18:35:49 -05:00
Sinan
b084d095bc New package: mapnik (#12708) 2019-10-02 13:50:57 -07:00
Tiziano Müller
d99b92febd libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475)
* libint: switch to 2-stage build for 2.6.0+

* libint: add tune and fortran variants

* cp2k: add support for libint >= 2.0

* cp2k: use pkg-config for linking libxc
2019-10-02 21:31:19 +02:00
Toyohisa Kameyama
da18ac3a0f cdhit: add zlib dependency. (#13015)
* cdhit: add zlib dependency.

* Add zlib variant.
2019-10-02 12:55:05 -05:00
Toyohisa Kameyama
b85ff04681 denovogear: Add missing zlib depenbdency and fix open handling error. (#13017) 2019-10-02 12:54:50 -05:00
Toyohisa Kameyama
58c01792ef cnpy: add zlib dependency. (#13016) 2019-10-02 12:54:31 -05:00
Dan Lipsa
210dd594a1 Add cuda to paraview build. (#12996) 2019-10-02 12:00:03 -05:00
George Hartzell
21e95e4141 Singularity 3.4.1 still needs the makefile patch (#13008)
* Singularity 3.4.1 still needs the makefile patch

* Constrain build patch to 3.4.0:3.4.1
2019-10-02 11:59:11 -05:00
Sinan
afca223b3d new package: openldap (#12748)
* new package: openldap

* fix mistake

* remove template text

* fix build error involving perl

* flake8

* improvements

* introduce multi valued variant for tls support

* improve tls variant

* overwrite build phase as opposed install

* improve style
2019-10-02 11:58:46 -05:00
Toyohisa Kameyama
1550d5cae6 ants: missing zlib dependency and fix working directory in install. (#13010) 2019-10-02 11:58:25 -05:00
Toyohisa Kameyama
7d9514d3fa breakdancer: missing ncurses dependency. (#13011) 2019-10-02 11:57:05 -05:00
Toyohisa Kameyama
d238b9d394 breseq: fix dependency and limit compiler version. (#13013) 2019-10-02 11:56:37 -05:00
Andreas Baumbach
64ff27626e update py-jupyter-notebook to use the real releases (#13020)
* github releases are not released versions, but from-source
  releases
* they lack the mimification of the JS/CSS components and as
  such require node-js and npm, this conflicts with python@3:
* this commit
  * drops the from-source dependencies on node-js and npm and
  * updates the checksums to the correct sha256 hashes of the
    pypi releases. The pypi-tarballs are different
2019-10-02 11:39:55 -05:00
Axel Huebl
bec2830802
ZFP: CMake Package (#12999)
* ZFP: CMake Package

ZFP is primarily build via CMake, which will have all install logic
and configuration files generated.
The 0.5.0 release did not support this yet, so we toss it.

* Patch ADIOS1: ZFP 0.5.1+ support

* ZFP: Expose all CMake variants
2019-10-01 23:28:36 -07:00
George Hartzell
22e75b77e3 direnv: add info for version 2.20.0 (#13007) 2019-10-01 22:34:14 -05:00
Sinan
d20e3517c2 new package: py-python-ldap (#12599)
* new package: py-python-ldap

* fix dependency types

* improvements

* Update var/spack/repos/builtin/packages/py-python-ldap/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-python-ldap/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* add openldap dependency
2019-10-01 20:59:53 -05:00
Sinan
91488ed8f5 New package: py-python-mapnik (#12786) 2019-10-01 18:37:34 -07:00
codeandkey
5c2b01ebcf picard: add 2.20.8 2019-10-01 18:19:37 -07:00
Daryl W. Grunau
248bc17bb0 go-md2man: disable module-mode (#12985)
* go-md2man: disable module-mode

* Update var/spack/repos/builtin/packages/go-md2man/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-01 19:17:10 -05:00
Eduardo Arango
c1ecd037d7 add singularity 3.4.1 (#12995)
* add singularity 3.4.1

Signed-off-by: ArangoGutierrez <eduardo@sylabs.io>

* revert some changes

Signed-off-by: ArangoGutierrez <eduardo@sylabs.io>

* add maintainers list to pkg singularity

Add @alalazo and me to the Singularity maintainers list

* Update var/spack/repos/builtin/packages/singularity/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/singularity/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/singularity/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-01 19:16:20 -05:00
Axel Huebl
436afdd2a8
Dataspaces: Fix Fetch URL, Savanna Spec (#13001) 2019-10-01 14:52:44 -07:00
Peter Scheibel
3575f9b382
GCC package: don't set CC etc. based on bin dir if it doesn't exist (#13000)
7bcb306 updated setup_environment in the GCC package to examine the
bin/ directory to find alternatively-named instances of CC, but this
failed to account for when GCC was being installed and failed when
it attempted to list the not-yet-existing installation prefix. This
commit updates the logic to skip this search if the bin/ directory
doesn't exist.
2019-10-01 14:29:01 -07:00
Massimiliano Culpo
245c1bb208 libaio: fixed a condition that checks whether we are running on OS X (#12976)
* libaio: fixed a condition that checks whether we are running on OS X

* libaio: simplified package by adding an explicit conflict for darwin

* libaio: added information to the docstring

* fio: added version 3.16, added conflict when using libaio, docstring

* lvm2: conflict due to libaio dep, improved docstring, simpler install

* mariadb: conflict due to libaio dep, improved docstring, version 10.4.7

* mariadb: the dependency on libaio is now conditional, removed conflict

* mariadb: fixed a typo in previous commit

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* libaio: turned into a MakefilePackage
2019-10-01 15:35:50 -05:00
Jimmy Tang
a7e64e5396 Kaldi package: add version 7637de7 and egs (#12911) 2019-10-01 10:24:03 -07:00
Jeffrey Salmond
5868e0f5f2 add new mercurial versions (#12997) 2019-10-01 12:08:28 -05:00
Christopher Edsall
82a3ee0868 Update chapel to current (1.19 -> 1.20) (#12991) 2019-10-01 11:47:57 -05:00
Axel Huebl
10e4d611a5 ADIOS2: 2.5.0 (#12987)
Add the latest ADIOS2 release, v2.5.0 .
2019-10-01 10:49:52 -05:00
Satish Balay
b9a860820a hypre: add version 2.18.0 (#12992) 2019-10-01 10:48:40 -05:00
Mark Olesen
f939697863 add adios2 dependency and configuration for newest OpenFOAM (#12993) 2019-10-01 10:48:14 -05:00
noguchi-k
5b4040ea36 libcerf:add CFLAGS for fujitsu compiler (#12990)
* libcerf:add CFLAGS for fujitsu compiler

* fix for flake8
2019-10-01 08:54:01 -05:00
egreen77
cfc17e9506 Update nano (#12980) 2019-09-30 16:27:29 -05:00
Adam J. Stewart
5b2b0ee9a3
Revert "update neovim (#12965)" (#12978)
This reverts commit 86a85b7eb2.
2019-09-30 13:18:27 -05:00
Satish Balay
c70f9bffe2 petsc, slepc: add new versions - 3.12.0 (#12979) 2019-09-30 13:18:11 -05:00
Seth R. Johnson
7bcb306d4a Fix GCC environment variables for external installations (#12454)
Unlike the compiler binary name search logic, the `setup_environment` in
GCC's package assumes the compiler names are *exactly* `gcc`, `g++`,
etc. In many external installations (Homebrew, Macports) the
installation includes only *suffixed* versions such as `gcc-9`.

This patch uses the GCC compiler search suffixes to actually locate the
correct filenames for the installed compilers, allowing the
Spack-generated module file to have useful definitions of CC, CXX, etc.

It also allows for the possibility that the user's external installation
of GCC is compiled without Fortran support, in which case the `FC`
environment variables are not defined.
2019-09-30 11:02:32 -07:00
t-karatsu
139eaa1306 otf2: add configure args to specify compiler commands. (#12711)
* otf2: add configure args to specify compiler commands.

* Modify the reference of the compile commands.
2019-09-30 08:18:09 -05:00
Glenn Johnson
c56f03a3ba The perl-uri-escape package duplicates perl-uri (#12971)
* The perl-uri-escape package duplicates perl-uri

The Perl URI::Escape module is in the Perl URI package so the Spack
perl-uri-escape package is a duplicate of the perl-uri package. This PR
does the following:

- replace `depends_on('perl-uri-escape')` with `depends_on('perl-uri')`
  in packages that dependend on perl-uri-escape
- add the version from perl-uri-escape to perl-uri
- remove the unneeded dependency from perl-uri
- remove the perl-uri-escape package

* Reinstated perl-test-needs dependency

Put the perl-test-needs dependency for perl-uri back in but set it to
type='test'.

* For tests to succeed the type must be ('build', 'test')
2019-09-29 09:27:42 -05:00
Massimiliano Culpo
467261803f raxml: simplified recipe by removing SIMD variants (#12952)
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28 13:45:01 -05:00
t-karatsu
c065c25a4c bowtie: fix for aarch64, and bugfix about c++11-narrowing. (#12953) 2019-09-28 13:44:02 -05:00
Massimiliano Culpo
4cebc68f06 vdt: simplified recipe by removing SIMD variants (#12954)
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28 13:41:57 -05:00
Jaroslav Hron
7e9365036f correct with-xxx-lib= options (#12964) 2019-09-28 13:39:45 -05:00
Patrick Schratz
86a85b7eb2 update neovim (#12965) 2019-09-28 13:28:27 -05:00
Shintaro Iwasaki
3776eccc4b bolt: add a new version, 1.0rc2 (#12966) 2019-09-28 13:27:33 -05:00
Daryl W. Grunau
8db94bcc86 eospac: laws.lanl.gov -> laws-green.lanl.gov (#12970) 2019-09-27 17:28:38 -07:00
Ross Miller
c49c37af9b py-adios package: restrict python dependency to <=3.6.x (#12932)
The adios code (currently) won't compile against the Python 3.7 C API.
This change adds a dependency on 3.6 or less.
2019-09-27 17:19:36 -07:00
Kevin Huck
b4c28182dc Tau package: turn off unsupported variants by default on OSX (#12890) 2019-09-27 17:16:44 -07:00
G-Ragghianti
61d41eea7f New package: libibumad (#12886) 2019-09-27 17:02:34 -07:00
Glenn Johnson
fc99eddb12 New package: maker and dependencies (#12904) 2019-09-27 14:59:58 -07:00
Seth R. Johnson
5201d2615e qt4: fix 'arch' string due to microarchitecture change (#12957)
qt4 fails to build because it's expecting something like 'x86_64' rather 
than 'broadwell'.
2019-09-26 21:15:17 +02:00
Massimiliano Culpo
90236bc9f5
Update target comparison semantic for a few packages (#12947)
Use spec.target.family instead of spec.architecture.target
2019-09-26 10:25:12 +02:00
Massimiliano Culpo
31e5318c24
Removed references to '(-march|-mtune|-mcpu)=native' (#12948)
Now that Spack injects microarchitecture specific optimizations for
the selected target, packages should avoid adding flags that could
step over those.
2019-09-26 10:02:08 +02:00
Massimiliano Culpo
78d051b534
parsimonator: simplified recipe by removing SIMD variants (#12949)
Now the support for SSE3 or AVX is tested on the selected target
2019-09-26 09:33:18 +02:00
Seth R. Johnson
f2967b6c16 New package: flibcpp (Fortran bindings to C++ standard library) (#12926) 2019-09-25 19:25:24 -07:00
liuyangzhuan
b384504218 butterflypack package: add version 1.0.3 (#12927) 2019-09-25 19:16:47 -07:00
Glenn Johnson
dd626a0f07 interproscan package: add version 4.8, patch for version 5 (#12897)
This PR adds interproscan-4.8, which has a completely different build
system than version 5. Note that this builds for running on a host as
opposed to a queue system. I am fairly certain that a queue system can
be configured later.

This PR also adds a patch for intrproscan-5 to build when the user
building the packages has a large GID by setting posix mode for tar.
2019-09-25 19:04:57 -07:00
Sinan
c5860d89b7 libspatialite package: add version 3.0.1 and missing dependencies (#12843) 2019-09-25 18:48:48 -07:00
Sinan
507b28de18 py-imageio package: add versions 2.4.1 and 2.5.0 (#12884) 2019-09-25 18:44:57 -07:00
Matthieu Dorier
e6cae978b8 llvm, mesa: update target comparison semantics (#12914)
* llvm: fixed issues with syntax and formatting
  * use spec.architecture.target.family
  * use spec.target instead of spec.architecture.target
* mesa: use == instead of __contains__
2019-09-25 16:41:02 -07:00
Adam J. Stewart
4e858e24b0
libflame: fix macOS build (#12950) 2019-09-25 18:37:33 -05:00
Matthieu Dorier
71cc29691b openblas: fixed a query to target family (#12910) 2019-09-25 22:15:23 +02:00
Christoph Junghans
ccfe8aaf76
portage: fix RelWithDebInfo build (#12944) 2019-09-25 11:29:43 -06:00
Christoph Junghans
e123058721
kokkos-kernels: initial commit (#12934) 2019-09-25 09:00:01 -06:00
Mathias Jacquelin
7a11a2ccdb Upcxx package: remove warning, add version 2019.9.0 (#12880)
A function added to this package ran as part of importing it and
printed a warning for most Spack invocations, this removes the
warning message.

Also:

* Use compilers directly instead of Spack compiler wrappers (since
  references to the compiler are embedded in text and binary files
  of the installation)
* Add 'cross' variant for setting CROSS environment variable for
  build
* Set UPCXX_INSTALL for generated module files
* Set UPCXX_GASNET_CONDUIT/UPCXX_NETWORK in generated module files
  on Cray systems
* Also set UPCXX_NETWORK in build environment for Cray systems
2019-09-24 13:25:05 -07:00
Simo Tuomisto
6cd5edacca heaptrack: added new package at version 1.1.0 (#12844) 2019-09-24 15:54:23 +02:00
Glenn Johnson
10d5e90e65 Add missing dependency to perl-xml-parser (#12903)
This PR adds the following dependency:

+    depends_on('perl-libwww-perl', type=('build', 'run'))
2019-09-24 12:51:55 +02:00
Glenn Johnson
fa5a9cd878 Added missing dependencies for perl-list-moreutils (#12900)
The following dependencies were added:

+    depends_on('perl-exporter-tiny', type=('build', 'run'))
+    depends_on('perl-list-moreutils-xs', type=('build', 'run'))
2019-09-24 12:45:39 +02:00
Glenn Johnson
b508eaa806 Added depencies to perl-libwww-perl (#12899)
The following dependencies are needed for perl-libwww-perl according to
https://metacpan.org:

+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-file-listing', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-http-cookies', type=('build', 'run'))
+    depends_on('perl-http-daemon', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))
+    depends_on('perl-http-negotiate', type=('build', 'run'))
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-net-http', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-www-robotrules', type=('build', 'run'))
2019-09-24 12:45:02 +02:00
Glenn Johnson
ca11ce06b8 Add missing dependencies to perl-http-daemon (#12898)
Added the following dependencies:

+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-module-build-tiny', type='build')
2019-09-24 12:44:28 +02:00
Axel Huebl
1d316c4eb3 spdlog: added version 1.4.1 (#12917)
Add newest release with ability to pre-build as shared or static
library.
2019-09-24 12:19:19 +02:00
Adam J. Stewart
53db1eafb9
Fix installation permissions on BLIS and libflame libs (#12919)
* Fix installation permissions on BLIS and libflame libs

* Fix undefined symbols
2019-09-23 18:54:47 -05:00
Jed Brown
958b81a564 libceed package: add version 0.5 (#12875)
Also enable vectorization via -O3 for gcc/clang
2019-09-23 10:38:44 -07:00
Seth R. Johnson
27d4e9a1d1 QT package: only enable fontconfig when freetype is enabled (#12574)
The 'fontconfig' option is only valid when freetype is enabled.
2019-09-23 10:04:29 -07:00
Xavier Delaruelle
53ab298e88 environment-modules: add version 4.3.1 (#12893) 2019-09-21 21:32:27 -05:00
Paul
ef652ee42a czmq package: add autoreconf stage (#12846) 2019-09-20 18:14:41 -07:00
Jordan Ogas
d9c22e3f9c charliecloud package: add version 0.11 and test dependency (#12861) 2019-09-20 18:01:40 -07:00
Sinan
326c2718d5 New package: py-gast (#12874) 2019-09-20 17:59:50 -07:00
t-karatsu
e26b23e980 intel-tbb: fix typo. 2019-09-20 17:53:23 -07:00
Sinan
af8f245f48 py-protobuf package: fix import error for Python 2.x (#12873) 2019-09-20 17:52:11 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
2019-09-20 00:51:37 -07:00
Valentin Clement (バレンタイン クレメン)
83bea039cf CLAW Compiler: added version 2.0.1 (#12878) 2019-09-19 18:27:22 +02:00
Adam J. Stewart
cbbd384628
blis: fix darwin install name (#12869) 2019-09-18 22:46:34 -05:00
Adam J. Stewart
a4e585bad5
googletest: fix darwin install name (#12871) 2019-09-18 22:46:16 -05:00
Adam J. Stewart
964500399b
libkml: fix darwin install name (#12872) 2019-09-18 22:44:57 -05:00
Adam J. Stewart
b33d005267
wcslib: fix darwin install name (#12868) 2019-09-18 22:44:38 -05:00
Adam J. Stewart
1fe94748d2
diffutils: add missing libiconv dependency (#12866) 2019-09-18 15:36:41 -05:00
Julien Loiseau
cacbb4ff7a Correcting branch used for FleCSPH (#12865) 2019-09-18 14:00:47 -06:00
Adam J. Stewart
ec11574a02
Add SQLite 3.29.0 (#12862) 2019-09-18 14:36:41 -05:00
Adam J. Stewart
6d7e543cef
GDAL: Add support for MKL driver (#12837) 2019-09-18 13:47:31 -05:00
Adam J. Stewart
680430df0f
Add libkml package (#12836)
* Add libkml package

* googletest needs to be linked to RPATH
2019-09-18 13:46:45 -05:00
Adam J. Stewart
9a7b5ac7cb
libunistring: add missing dependency on libiconv (#12863) 2019-09-18 13:37:19 -05:00
Adam J. Stewart
9d67ac2407
Add minizip package (#12835) 2019-09-18 12:53:01 -05:00
Adam J. Stewart
3eb0bcf4a1
Add uriparser package (#12834)
* Add uriparser package

* googletest needs to be linked to RPATH
2019-09-18 12:52:40 -05:00
Patrick Gartung
7c0c31361a
Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858)
Update py-machotools dependencies and versions.
2019-09-18 07:24:45 -05:00
Sinan
9807bb5d03 add a version (#12856) 2019-09-17 22:54:18 -05:00
Greg Becker
eb4dd4a51a Boost: add libs property (#12849) 2019-09-17 20:30:29 -05:00
Sinan
02ae944c74 fix typo in version number (#12855) 2019-09-17 20:28:57 -05:00
Christoph Junghans
b11a98abf0
cmake: add v3.15.{2,3} (#12847) 2019-09-17 13:13:39 -06:00
George Hartzell
ae37896800 cryptsetup package: dont vendor libuuid in util-linux (#12839)
Fixes #12829

This adds a variant to the util-linux package that controls whether it
builds its own libuuid.  Variant defaults to True.  It enables other
packages to choose to get libuuid from the libuuid package instead.

This also changes the cryptsetup package to build util-linux with
~libuuid (so it uses an explicitly-Spack-built instance of libuuid
instead).
2019-09-17 11:22:10 -07:00
Adam J. Stewart
14ef0c238e
Add py-pycbc package (#12823) 2019-09-16 13:10:02 -05:00
Adam J. Stewart
269f34c310
Add py-astropy 2.0.14 (#12816) 2019-09-16 13:09:30 -05:00
Adam J. Stewart
98eb8ef0af
Add py-beautifulsoup4 4.8.0 (#12815) 2019-09-16 13:08:36 -05:00
Adam J. Stewart
94291ebd1a
Add py-mpld3 package (#12822) 2019-09-16 13:08:17 -05:00
Adam J. Stewart
a08a7da413
Add py-asdf package (#12817) 2019-09-16 13:07:48 -05:00
Adam J. Stewart
fea315e274
Add py-bintrees package (#12818) 2019-09-16 13:07:21 -05:00
Adam J. Stewart
0885615e22
Add py-lscsoft-glue package (#12821) 2019-09-16 13:06:59 -05:00
Adam J. Stewart
3b11dfdca0
Add py-jplephem package (#12819) 2019-09-16 13:06:33 -05:00
Adam J. Stewart
947413236b
Add py-ligo-segments package (#12820) 2019-09-16 13:06:09 -05:00
Adam J. Stewart
4cce23d1d3
Add py-pyopenssl package (#12824) 2019-09-16 13:05:37 -05:00
Adam J. Stewart
0d64b12c58
Add py-semantic-version package (#12825) 2019-09-16 13:05:12 -05:00
Adam J. Stewart
b8481d7913
Add py-sortedcontainers package (#12826) 2019-09-16 13:04:50 -05:00
Adam J. Stewart
09e3d6514b
Add py-weave package (#12828) 2019-09-16 12:57:18 -05:00
Adam J. Stewart
321c857d4c
Add py-soupsieve package (#12827) 2019-09-16 12:56:53 -05:00
Adam J. Stewart
e3969e33fd
Relax Python version constraints on py-html5lib (#12811) 2019-09-16 12:56:21 -05:00
Chuck Atkins
76b79c125a
xdmf3: new package (#12778) 2019-09-16 12:02:07 -04:00
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832)
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813)
Fix bug in string conversion of "make_jobs"
2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785)
This version in combination with the included patch can install
without root.
2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762)
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794)
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768)
* openmx: new package

* openmx: use copy method
2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777)
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
2019-09-10 10:52:55 -07:00
Owen Solberg
c23bea80bd py-atropos: new package (#12745)
* create new package py-atropos

* remove whitespace

* make tqdm and pysam dependencies optional, exposed as variants
2019-09-10 12:18:31 -05:00
Hironori-Yamaji
fefd998509 ccs-qcd: disable parallel builds (#12775) 2019-09-10 14:19:09 +02:00
xfzhao
c30f9c6833 update bbmap (#12721)
* update bbmap

* remove one extra comment line
2019-09-09 12:55:06 -05:00
Michael Kuhn
62f0286f5e Fix pkgconfig dependencies (#12714)
pkgconfig is the virtual dependency, pkg-config is an implementation.
2019-09-09 12:54:46 -05:00
brietzke
4de32033b1 Update py-bokeh: new version & dependencies" (#12724)
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* update py-bokeh: new version & dependencies

* trigger travis-ci

* adjust python dependency-type to br
2019-09-09 11:59:27 -05:00
brietzke
155a667b7a New package: py-fsspec (#12725)
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* new package: py-fsspec: add package.py

* trigger travis-ci

* adjust python dependency-type to br
2019-09-09 11:58:49 -05:00
Dan Lipsa
1a8c572316 Paraview version (#12766)
* Update paraview

* Paraview 5.6.2 provides only .xz (no .gz)

* Add list_url and list_depth
2019-09-09 11:57:53 -05:00
viniciusvgp
7849dbb529 binutils: fix undefined symbol libintl_dgettext (#12770) 2019-09-09 11:05:04 -05:00
Greg Sjaardema
db1fb16840 CGNS: Add setting of RPATH on Darwin (#9984)
* CGNS: Add setting of RPATH on Darwin

This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here.  
If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly.

* Restrict MACOSX_RPATH setting

This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
2019-09-08 17:14:56 -05:00
Geoffrey Oxberry
983e6b4a4a fribidi@1.0.5: new package (#12386) 2019-09-08 17:10:39 -05:00
Sinan
4a18d40a66 new package: py-iniparse (#12638)
* new package: py-iniparse

* add git version supporting python3

* redo python dependency
2019-09-08 17:09:24 -05:00
Sinan
d66caf7a66 Package/py configobj (#12639)
* new package: py-configojb

* add version 4.7.2

* improve dependencies

* fix url for versions > 5.0.0

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* use format to create url strings

* fix typo

* improve style

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-08 17:08:59 -05:00
Owen Solberg
2ad6bed77c for fakeroot support, add "shadow" dependency (#12754)
* adding checksum for singularity 3.4, adding dep for shadow

* make v3.4 a TODO for now -- needs cryptsetup package first
2019-09-08 13:55:15 -05:00
Adam J. Stewart
bff667051b
Fix PyQt installation (#12479)
* Fix PyQt installation

* Switch dependency type

* Replace SIP dependency with resource

* Relax py-pyqt4 Qt dependency
2019-09-08 10:48:50 -05:00
Simo Tuomisto
5a21c781f3 py-gpaw: Fixing missing numpy include path, adding newer version of p… (#12737)
* py-gpaw: Fixing missing numpy include path, adding newer version of py-gpaw and fixing a bug with libxc.c in older py-gpaw

* py-gpaw: Fix Python and ASE version dependencies

- GPAW 19.8.1 requires Python 3.x, add dependency on python@3.5:

- GPAW releases are associated with a corresponding ASE release, add
  matching ASE version dependencies.

* py-gpaw: Enable the scalapack variant by default

GPAW installation instructions say scalapack is optional but "highly
recommended". Thus enable it by default.
2019-09-08 10:46:47 -05:00
Owen Solberg
8fd8b54e97 py-cutadapt: Updated version checksum (#12741)
* add new cutadapt release 2.5, and adjust dependencies conditional on version

* use https, not ssh, for git url

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-08 10:46:08 -05:00
Owen Solberg
fe26678299 new package: py-bz2file (#12761)
* update py-xopen (add 0.8.2 checksum)

* refine version specific dependencies

add py-bz2file, which needs to be created

* create py-bz2file

* Revert "refine version specific dependencies"

This reverts commit 70649da98851fefb2f936ca99a012fe6bef07b70.

* Revert "update py-xopen (add 0.8.2 checksum)"

This reverts commit 7400f44caa6e98419eb4bc3107704b91e8a2018b.
2019-09-08 10:38:37 -05:00
Owen Solberg
b83fa3909e py-xopen: update release 0.8.2 checksum (#12742)
* update py-xopen (add 0.8.2 checksum)

* refine version specific dependencies

add py-bz2file, which needs to be created

* py-bz2file needed when built with python 2.7

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* space after comma
2019-09-08 10:38:19 -05:00
Owen Solberg
4468ee2437 py-dnaio: new package need by py-cutadapt (#12743)
* add new package py-dnaio

* provide git url with https, not ssh, protocol

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-08 10:37:49 -05:00
Todd Gamblin
a2220f3150 flake8: make entire repository pass spack flake8 -a
- Fix trailing whitespace missed by the bug described in #12755.

- Fix other style issues that have crept in over time (this can happen
  when flake8 adds new checks with new versions)
2019-09-07 23:59:10 -07:00
Owen Solberg
48c3c833e8 patch boost version 1.54-1.55 when being built with ANY gcc version after 5.0 (#12718) 2019-09-07 22:45:53 -05:00
Kevin Huck
35221c127e Updating TAU package. Fixing compiler specification for OSX (#12720)
and making Fortran an option that can be disabled.  Also added
support for the POSIX I/O wrapper and OMPT for OpenMP.
2019-09-07 22:44:40 -05:00
Howard Pritchard
1a38285be9 mesa: disable use of libunwind for arm arch (#12735)
There are problems with libunwind for arm and trying to use it with mesa.
See for example:

https://github.com/grate-driver/mesa/issues/6

disabling use of libunwind for arm, allows the package to be built

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2019-09-07 22:33:30 -05:00
Jonas Lippuner
c3a2528022 add mpi variant to p4est package to allow turning off MPI (#12739) 2019-09-07 22:29:53 -05:00
Axel Huebl
331e4e32be ncurses: improve build time (#12621)
Apply configure options to skip manpage generation
and test builds for both wide and non-wide builts.
2019-09-07 22:27:07 -05:00
Ruben Di Battista
ac7a17754f luarocks: Use make command instead of install (#12703)
This way luarocks does not attempt to pull stuff from the internet.

Fix #3909
2019-09-07 21:06:52 -05:00
Adam J. Stewart
faa3d6a2a5
Add py-numpy 1.17.2 (#12753) 2019-09-07 20:44:46 -05:00
Piotr Luszczek
bbdb033e5f Add patches to work around CMake versions (#12744)
- Use of symbol testing macro requires explicit include()
- CMake policies are not version-portable and the support has to queried
  based on CMake version
2019-09-07 19:04:20 -05:00
Owen Solberg
c4da66be4c font-util 1.3.2 (#12728) 2019-09-07 18:57:22 -05:00
Sinan
754ce972a3 new package: py-pygdal (#12747) 2019-09-07 18:23:38 -05:00
Vanessasaurus
25bbc27716 adding shadow-uidmap (#12750)
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
2019-09-07 17:36:45 -05:00
Mathias Jacquelin
696e12da98 upcxx: new package
Adding a UPC++ spack package pointing to the default 2019.3.2 UPC++
version, and allowing to build UPC++ with the experimental CUDA variant.
2019-09-06 16:04:33 -07:00
Toyohisa Kameyama
5def1dd39d openspeedshop: fixed build on arm. (#11861)
* openspeedshop: fixed build on arm.

* remove patch comment.
2019-09-06 13:26:24 -07:00
Geoffrey Oxberry
8fe5405e1b libpeas@1.22.0: new package (#12385)
* libpeas@1.22.0: new package

* libpeas: note more build dependencies

Build and link dependencies were obtained through a combination of
examining the `config.log` file from `configure` and looking at the
pkg-config files of `libpeas`.

* libpeas: add search path for GIR/typelib files
2019-09-06 12:53:12 -05:00
Geoffrey Oxberry
071fb3dd6a iso-codes: new package (#12389) 2019-09-06 12:48:08 -05:00
Toyohisa Kameyama
34647913be fftw: change default value of simd variant for other than x86_64 (#11627)
* Use spec.architecture.target insted of platform.

* remove default in simd variant value.
simd variant change to archtecture independent values.

* Add check simd values.

* rewrite check simd values.

* * flake8
* change aarch64 to arm (neon support only 32 bit arm.)
2019-09-05 11:42:04 -07:00
Matthieu Dorier
1dbf3c208b FIX Catalyst: corrected catalyst package for aarch64 targets (#12707)
* corrected catalyst package for aarch64 targets

* corrected syntax

* corrected undefined variable
2019-09-05 12:44:38 -05:00
Ruben Di Battista
6ef95481ef Add pixz package (#12698) 2019-09-05 09:40:29 -05:00
Jennifer Herting
ca8db06e37 [jemalloc] added version 5.2.1 (#12706) 2019-09-05 09:39:42 -05:00
Hironori-Yamaji
ed6a2f0ef9 textparser: new package (#12713)
* textparser: new package

* textparser: use 'parallel = False'
2019-09-05 09:37:21 -05:00
Michael Kuhn
ad93f47c8f mariadb: Add missing dependencies (#12715)
Found while building mariadb in a minimal build environment.
2019-09-05 09:34:44 -05:00
Janne Blomqvist
30756a643b py-ase: New version 3.18 (#12697)
* py-ase: New version 3.18

Add ASE version 3.18. ASE 3.18 has dropped support for python 2.x,
hence add a dependency on python@3.5: for it.

* Add more ASE dependencies

Address review comments, add dependencies on py-scipy, py-matplotlib,
py-flask, and also add type=('build', 'run') dependency specifiers.
2019-09-05 09:09:37 -05:00
Toyohisa Kameyama
e50dbe6f76 cctools: fixed to build on ARM. (#11862) 2019-09-04 16:45:41 -07:00
Paul Bryant
cb2d18c1e6 Add Go 1.13 2019-09-04 15:04:51 -07:00
t-karatsu
e08f527004 openblas: Add route to f_check for Fujitsu compiler. (#11804) 2019-09-04 15:01:58 -07:00
asmaahassan90
00b02fd234 Add gams recipe (#12700)
* Add gams recipe

* Break down lines to pass lint
2019-09-04 10:13:58 -05:00
t-karatsu
fc9e17289a boost: add -c option to C/C++ compile commands for clang. (#12694) 2019-09-04 10:07:31 -05:00
Mario Melara
407834fffa cppflags point to ncurses headers (#12691)
While debugging this package on our Cray machine, tmux was throwing an
error involving the ncurses headers. Tmux would look for headers in
system locations rather than where spack installed ncurses. Tested only
on a Cray.
2019-09-04 10:06:35 -05:00
asmaahassan90
5953336c3e Add tecplot recipe (#12688)
* Add tecplot recipe

* break down description to pass lint

* fix format to match python 2.6 requiremnets

* importing os
2019-09-04 09:25:43 -05:00
Matthieu Dorier
3181021c11 Boost: fixed problem when requesting ~signals for boost >= 1.69 (#12627)
* fixed problem when requesting ~signals for boost >= 1.69

* added checks for all libs in with_libs
2019-09-04 09:25:00 -05:00
Sinan
d7ef97392c new package: liblas (#12619)
* new package: liblas

* explicitly disable build options

* fix indentation
2019-09-04 09:20:38 -05:00
Peter Scheibel
868f7869e0
py-chardet package: add py-pytest-runner dependency (#12692)
This required dependency was missing
2019-09-03 14:56:53 -07:00
Sinan
c14b7379f9 new package: protobuf-c (#12634)
* new package: protobuf-c

* Update var/spack/repos/builtin/packages/protobuf-c/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-03 16:16:50 -05:00
t-karatsu
ae41ef9146 Boost/Change the method for analysis version (#12676)
* boost:Change the method for analysis version when using Fujitsu compiler.

* Change version to apply patch for Fujitsu.

* fix typo
2019-09-03 09:27:48 -05:00
Hironori-Yamaji
9e1800d81c pmlib: new package (#12625)
* pmlib: new package

* pmlib: fix options and add patch

* pmlib: fix the patch file
2019-09-03 09:26:47 -05:00
Hironori-Yamaji
6ea27cabd6 ccs-qcd: new package (#12681)
* ccs-qcd: new package

* ccs-qcd: fix variant and replacement string
2019-09-03 09:15:34 -05:00
Todd Gamblin
da7fed86a8 tests: add tests for spack extensions command
- add tests for `spack extensions`
- refactor `test_activations` test to use real extensions.
2019-09-02 19:24:48 -07:00
Michael Kuhn
9b8f1fdc40 esmf: Fix build with gcc@8: (#12678) 2019-09-02 10:02:17 -05:00
asmaahassan90
6a791db72d Add XSSP recipe (#12679) 2019-09-02 10:00:57 -05:00
Michael Kuhn
d7a92adb93 icu4c: Add missing python dependency (#12683) 2019-09-02 09:52:51 -05:00
asmaahassan90
c184e79b91 Add fpocket (#12675)
* Add fpocket

* fix recipe

break down the description to pass lint

* update license

* make changes as per maintainer's review
2019-09-02 09:51:53 -05:00
asmaahassan90
4e487bf308 Install the newest version of ncbi-rmblastn (#12580)
* Install the newest version of ncbi-rmblastn

Version ncbi-rmblastn 2.2.28 coonfiguration fails for gcc compiler on ubuntu 16.04 due to some compatibility issues that requires manual intervention to keep the installation going. However you still stumble upon other issues while compiling it.
Using Intel compiler passes the configuration step but fails for the compilation process as well.

Here I'm using the latest version and patch, and the recommended configuration option as mention in http://www.repeatmasker.org/RMBlast.html

* uploading ncbi-blast patch
2019-09-01 11:11:15 -05:00
Kevin Manalo
421310a037 IDBA: package does not need conflicts with other compilers (#12674) 2019-09-01 11:08:05 -05:00
asmaahassan90
d3b89083f3 Add Vesta recipe (#12581)
* Add Vesta recipe

* Break down description to pass lint

* Make changes as maintainers' review

* remove whitespaces
2019-09-01 10:41:57 -05:00
健美猞猁
8c9e14486b A new package: fastp. (#12671)
* A new package: fastp.

* Flake8.

* Flake8.
2019-09-01 00:01:35 -05:00
Sinan
bb28028608 new package: py-requests-oauthlib (#12548)
* new package: py-requests-oauthlib

* add a version

* fix typo
2019-08-31 15:13:04 -05:00
Sinan
6723032440 new package: py-systemd-python (#12595) 2019-08-31 14:57:03 -05:00
Glenn Johnson
1a8ece4504 Add MKL variant to Julia (#12602)
This PR provides an option to build Julia with Intel MKL.
2019-08-31 14:48:40 -05:00
Sinan
6ec5cf4bf0 new package: optipng (#12608) 2019-08-31 14:41:06 -05:00
Sinan
ed59a94d04 new package: pngquant (#12609) 2019-08-31 14:40:26 -05:00
Sinan
da48112812 new package: pktools (#12611)
* new package: pktools

* rename and enable utilities

* enable build with FANN

* add variants, dependencies

* expcitly turn off options when not in use
2019-08-31 14:39:51 -05:00
Sinan
1461c90bd1 new package: FANN (#12614) 2019-08-31 14:38:46 -05:00
Cameron Smith
9ce9d45aa7 Add int64 variant to pumi and zoltan (#12630)
* pumi and zoltan: add int64 variant

* typo
2019-08-31 14:28:56 -05:00
Sinan
7a60be5154 add variant for building RTREE module (#12668) 2019-08-31 14:12:20 -05:00
Sinan
392e790884 new package: libwebp (#12669) 2019-08-31 14:10:30 -05:00
Glenn Johnson
ed6c9e8ed8 Add conflicts statement to mariadb (#12670)
The mariadb-5.5 series can not be compiled with gcc-9.1.0 and above. Add
a conflicts statement to reflect that.

The error is due to -Werror=address-of-packed-member, a warning that is
new in gcc-9.
2019-08-31 14:09:51 -05:00
健美猞猁
4a5d740eaf A new package: py-gdc-client. (#12672)
* A new package: py-gdc-client.

* Flake8.
2019-08-31 14:08:05 -05:00
Ruben Di Battista
bc56f87b09 p4est package: add version 2.2 (#12603) 2019-08-30 18:44:35 -07:00
Sinan81
2a27f50d14 new package: attr 2019-08-30 18:27:46 -07:00
Justin S
ce15a28f7d salmon package: add version 0.14.1 (#12646) 2019-08-30 18:22:59 -07:00
Glenn Johnson
661a894c85 Update R CRAN packages (#12019)
* Update R CRAN packages

This PR update R CRAN packages. It also ensures that spack built
packages that correspond to R recommended packages are specified in the
dependency list. This is needed for #12015.

* Add more updates to packages

* Updated dependencies of CRAN R packages

Also, use cloud.r-project.org rather than cran.r-project.org to use
automatic redirection to mirrors. This minimizes the load on the cran
server.

* Update to latest versions of CRAN R packages

* Fix flake8 issues

Some blank lines at the end of a coupple of package files crept in.

* Adjust r-animation dependencies

The r-magick package depends on image-magick, so r-animation should as
well. Also, add in texlive for LaTeX support.

* New package: r-magick

* Adjust line spaces in r-magick

* Add swftools dependenct to r-animation

* New package: swftools

This is needed bt r-animation

* Add 'when' clause to some package dependencies

- r-animation
- r-coin
- r-dt
- r-openssl

* New package: r-ellipsis

* New package: r-vctrs

* New package: r-zeallot

* New package: r-generics

* New package: r-cardata

* Add r-progress dependency to r-readxl

* New package: r-askpass

* New package: r-openxlsx

* New package: r-rio

* New package: r-sys

* New package: r-zip

* Add more updated packages

These are updates that have happened while working on this PR as well as
catching the ones from the cran.rstudio.com URL that were missed before.

* New package: r-gower

* New package: r-recipes

* New package: r-squarem

* New package: r-libcoin

* New package: r-rcmdcheck

* New package: r-remotes

* New package: r-sessioninfo

* New package: r-xopen

* New package: r-rgexf

* New package: r-rook

* New package: r-later

* New package: r-promises

* New package: r-xfun

* New package: r-urca

* New package: r-ggsignif

* New package: r-polynom

* New package: r-ucminf

* New package: r-ordinal

* New package: r-inum

* New package: r-debugme

* New package: r-fs

* New package: r-shinyfiles

* New package: r-gsa

* New package: r-nmof

* New package: r-dosnow

* New package: r-rann

* New package: r-reticulate

* New package: r-future

* New package: r-globals

* New package: r-listenv

* New package: r-future-apply

* New package: r-rsvd

* New package: r-sctransform

* New package: r-mitools

* Remove a stray FIXME line

* Fix typo in dependency for r-rcmdcheck

* Remove the dependency on r-splines

The r-splines package never existed in spack, but it does not exist on
CRAN either. There is an archive version from 1999 but it does not have
the proper extension format for modern R packages. The latest version
does not depend on r-splines, and apparently previous versions at least
built without it. Also, bump the required R version.

* Fix typo in r-rcpp dependency

* Fix typos in dependencies

- r-diagrammer
- r-janitor
- r-seurat

Also, bump minimum R version for r-rngtools.

* New package: r-clisymbols

* New package: r-fitdistrplus

* New package: r-gbrd

* New package: r-gh

* New package: r-ini

* New package: r-metap

* New package: r-npsurv

* New package: r-rdpack

* New package: r-snakecase

* New package: r-tinytex

* New package: r-usethis

* Make recommended changes

Made the changes that were recommended in the initial review.

- change cran.rstudio.com to cloud.r-project.org
- change R-project to r-project
- for packages with no listed homepage use the canonical link to the
  package page
- for packages with a dependency constraint on R itself, specify the
  dependency type
- add `list_url` where missing from package

* New package: r-hdf5r

This is needed for some older versions of r-seurat.

* Set R versions in packages

If the R version is specified in the DESCRIPTION file then set it in the
respective spack package.py file.

* Update var/spack/repos/builtin/packages/r-aer/package.py

Change dependency version of r-car.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Set constraint of mlbench dependency of r-adabag

* Set constraint on r-rcpp dependency of r-ape

* Removed "suggested" r-testthat from r-bibtex

* Update var/spack/repos/builtin/packages/r-bindrcpp/package.py

Fix dependency spec of r-bindr in r-bindrcpp.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/r-blob/package.py

Add r-vctrs version constraint.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove r-base64enc dependency from r-callr

* Update var/spack/repos/builtin/packages/r-car/package.py

Set constraint on r-cardata dependency.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove unneeded dependencies from r-clipr

* Add gmake dependency to r-construct

* Set the proper homepage for r-crayon

* Add r-jsonlite as a dependency for r-crul

The jsonlite package moved from "suggests" to "imports" with 0.8.4.

* Remove accidental colon after package name

* Add version constraint to r-fpc dependency in r-dendextend

* Additional constraints for R version with r-digest

* Add r-jsonlite dependency for latest verion of r-dt

* Add r-htmltools dependency in r-dygraphs package

* Removed unneeded dependencies from r-fnn

* Remove unneeded dependencies from r-formatr

* Add version constraint for r-mvtnorm dependency in r-fpc

* Added gmake dependency to r-fs

* Add r-globals dependency in r-future-apply

* Add perl dependency to r-gdata

* Add openssl dependency for r-ggally

* Removed unneeded dependencies from r-globaloptions

* Update r-haven

- Add version constraint on r-forcats
- Add gmake build dependency

* Fixed gmake dependency

Gmake is a build only dependency.

* Apply suggestions from code review

Apply a batch of suggestions from Adam Stewart.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove unneeded dependencies from r-hoardr

* Fix r-htmlwidgets homepage

* Add gmake build dependency to r-httpuv

* Remove unneeded dependency from r-log4r

* Remove unneeded dependency from r-maldiquant

* Add gmake build dependency to r-minqa

* Remove unneeded dependency from r-mlbench

* Set constraint on R6 dependenvy of r-pbdzmq

* Set constraints on r-callr dependency of r-pkgbuild

* Remove unneeded dependency from r-nloptr

* Remove unneeded dependencies from r-pkgmaker

* Set R version constraint for r-raster

* Set version constraint on rcpp for r-rcppprorgess

* Added gmake build dependency

* Remove unneeded dependencies from r-rematch

* Remove unneeded dependency from r-plogr

* Add gmake build dependency for r-rcurl

* Apply suggestions from code review

Bring in more suggestions from Adam Stewart.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove cnpy dependency from r-rcppcnpy

The r-rcppcnpy package has its own modified copy of the cnpy source and
will build from that internal source. The cnpy dependency is therefore
unnecessary.

* Add comment to reconcile dependencies

The CRAN site lists Perl, Getopt::Long as a dependency. The Spack Perl
will have the Getopt::Long package installed so just depend on Perl.

* Add dependency on udunits2 with newer versions of r-units

* Set additional proj constraint for r-sf

Support for PROJ6 was added in r-sf-0.7-4.

* New package: pandoc

This package installs the pandoc and pandoc-citeproc binaries in order
to satisfy dependencies on pandoc until the Haskell framework is in
Spack.

* Add pandoc dependency to r-bookdown

* Add comment about MPI in r-ergm

* Add pandoc dependency for r-reprex

* Add proj constraints to r-rgdal dependencies

Support for PROJ6 was added in version 1.4-2.

* Modifications to r-rgl

- Rearranged the dependencies to be more consistent with other packages
- put the type last on the depends_on lines to be consistent with other
  packages
- Added version constraints for some dependencies
- Added pandoc build dependency

* Be more accurate with rjsonio constraint for r-rgooglemaps

* Remove unneeded dependencies from r-rhmmer

* Tweak constraints for r-rjava

- Set java version constraint
- add gmake build dependency

* Add pandoc dependency to r-markdown

* Remove unneeded dependencies from r-rrcov

* Tweak r-rstan package

- remove duplicate specifications
- remove unneeded when conditions
- add version constraints
- arrange to follow order on CRAN page more closely
- add gmake build dependency
- add pandoc build dependency

* Add pandoc build dependency for r-rstantools

* Remove unneeded dependency from r-runit

* Remove unneeded dependencies from r-selectr

* Remove example R code from description

The example would module loading to break, at least in the case of Lmod
using TCL module files. It could be during the TCL to Lua conversion but
the module fails due to interpreting ipart of the example as a command.

* Update r-seurat

New version of r-seurat with new dependencies.

* New package: r-dqrng

* New package: r-leiden

* New package: r-rcppannoy

* New package: r-rcppparallel

* New package: r-rspectra

* New package: r-sitmo

* New package: r-uwot

* Remove unneeded dependency from r-snow

* Remove unneeded dependency from r-sourcetools

* Added pandoc build dependency for r-stanheaders

* Remove unneeded dependencies from r-taxizedb

* Remove unneeded dependencies from r-tclust

* Add dependency constraints for r-threejs

The following are needed for version 0.2.2:
- r-matrix
- r-jsonlite

* Remove unneeded dependencies from r-vfs

* Remove unneeded dependencies from r-vgam

* Remove unneeded dependency from r-xlconnectjars

* Remove unneeded dependency from r-xlsxjars

* Remove unneeded dependency from r-xnomial

* Remove ~mpi from fftw dependency of swftools

* Apply suggestions from code review

Add latest round of suggestions from Adam Stewart.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix rjsonio spec for r-rgooglemaps

The r-rjsonio spec is a when conditional.

* Rename 3 R.* packages

- r-utils --> r-r-utils (R.utils)
- r-oo --> r-r-oo (R.oo)
- r-methodss3 --> r-r-methodss3 (R.methodsS3)

Also, renamed dependencies in packages that depend on these three.

* Loosen version constraint on mariadb for r-rmysql

Make the mariadb constraint on mariadb-5.5 rather than the more
specific, and limiting, mariadb-5.5.56. This will allow an external
mariadb, such as mariadb-5.5.60 on CentOS-7.5 to be used. It also allows
for r-rmysql to be built against newer versions of the mariadb-5.5
series that might be added to spack.
2019-08-30 18:22:13 -05:00
Adam J. Stewart
9c98323080
Add athena package (#12663)
* Add athena package

* Flake8 fix

* Fix missing separator error

* Add master branch
2019-08-30 18:18:33 -05:00
brietzke
7e7e0723b5 gtkplus package: add variant for CUPS support (#12566)
Default is ~cups (no CUPS support). Before this option, gtkplus would
potentially use a system-installed version of CUPS.
2019-08-30 15:03:44 -07:00
Phil Tooley
f759eda3ae extrae package: add 3.7.1, optionalise dyninst, papi (#11978)
* Convert to Autotools package
* dyninst and papi are now optional (off by default)
* limit dyninst version to < 10 (see
  https://github.com/bsc-performance-tools/extrae/issues/30)
* Add numactl dependency
* Enable parallel installs for 3.7 and later
* Set EXTRAE_HOME in module files and for dependent package installs
* Generalize cxx11 support flag (previously it was using a specific
  syntax and this updates it to use the cxx11 support flag for the
  compiler in use).
2019-08-30 11:28:14 -07:00
Jimmy Tang
517846003f kaldi package: fix installation of libraries (#12177)
* The install for kaldi was copying library symlinks but not the
  actual library files, this makes sure to copy the libraries
* All libraries are installed to 'prefix.lib' (the original
  library directory structure is no longer maintained)
* The install step for executables did not account for the different
  dynamic library suffix on MacOS
2019-08-30 11:11:06 -07:00
Sinan
f635a376bd New package: py-oauthlib (#12528) 2019-08-30 10:57:59 -07:00
George Hartzell
36933901ba gtkplus: package cairo dependency must be +gobject (#12655)
e891cc4 updated the cairo package to make gobject support optional
and disabled it by default. gtkplus requires gobject support so this
explicitly enables +gobject on the cairo dependency of gtkplus.
2019-08-30 10:47:53 -07:00
Adam J. Stewart
19ed010b0c
Add py-pytest 5.1.1 (#12660) 2019-08-30 12:45:18 -05:00
Adam J. Stewart
0819a29fe2
Add py-packaging 19.1 (#12659) 2019-08-30 12:44:59 -05:00
Adam J. Stewart
d58a2a704d
Add py-pluggy 0.12.0 (#12658) 2019-08-30 12:44:15 -05:00
Adam J. Stewart
81a514c2e6
Add py-importlib-metadata package (#12657) 2019-08-30 12:43:55 -05:00
Adam J. Stewart
cdcf814003
Add py-zipp package (#12656) 2019-08-30 12:43:37 -05:00
Sinan
4483473483 OpenSceneGraph package: add version 3.6.4; update URL and checksums (#12626)
Replace old checksums with sha256 checksums
2019-08-29 15:38:49 -07:00
Mark W. Krentel
f8e2dbc488 hpctoolkit: tighten some dependencies
Change the depends_on type from default (build + link) to just 'link'
for binutils and a few other packages.  We don't use the binutils
utilities (only libs).  On cori at NERSC (Cray), this was breaking the
build by covering up the system ld.
2019-08-29 14:07:16 -07:00
Janne Blomqvist
f5948fa5e9 elpa package: add version 2018.11.001 (#12645)
Remove designation of 2017.11.001 as preferred version
2019-08-29 14:06:42 -07:00
brietzke
a9e6d75230 emacs package: add version 26.2, jpeg dependency (#12632) 2019-08-29 14:04:09 -07:00
健美猞猁
152a840cff Scalpel package: remove CMake dependency (#12631)
Scalpel does not depend on CMake
2019-08-29 14:03:12 -07:00
Kevin Manalo
5de29a5130 NAMD package: add version 2.13 (#12616) 2019-08-29 14:00:06 -07:00
Kevin Manalo
ff6c00e9ba ABINIT package: add version 8.10.3 (#12615) 2019-08-29 13:59:26 -07:00
Matthias Diener
4ef4877a6f mc package: add version 4.8.23 (#12605) 2019-08-29 13:58:10 -07:00
Sinan
64364260ef New package: py-ecdsa (#12598) 2019-08-29 13:57:36 -07:00
Sinan81
d882785c9e new package: py-python-jenkins 2019-08-29 13:56:10 -07:00
Sinan
1f56c1e647 New package: py-mysqlclient (#12594) 2019-08-29 13:49:50 -07:00
Howard Pritchard
292baab069 paraview: use Spack-built libpng (#12587) 2019-08-29 13:18:37 -07:00
Sinan
7badb818cd qjson package: enable building with qt4 (#12577) 2019-08-29 11:56:08 -07:00
Sinan
f03a9e8ac6 qtkeychain package: enable building with qt4 (#12578) 2019-08-29 11:55:11 -07:00
Sinan
972759896e QCA package: add version 2.2.1 and update CMake args (#12576)
* Version 2.1.3 requires QT version 5.10.0 or earlier
* Add CMAKE_CXX_STANDARD=11 argument
* Add CMake argument when building against qt@4
2019-08-29 11:47:46 -07:00
Geoffrey M Oxberry
53e9e4d7de bugfix: atk build requires libffi to detect glib 2019-08-29 11:00:01 -07:00
Sinan81
c9a3cfee58 new package: py-repoze-lru 2019-08-29 10:59:05 -07:00
Sinan
60afca9f3c New package: py-pyudev (#12554) 2019-08-29 10:55:37 -07:00
Sinan
9bd9be037a New package: py-pytest-cache (#12552) 2019-08-29 10:49:56 -07:00
Sinan
12dc64159f New package: py-pydotplus (#12537) 2019-08-29 10:33:03 -07:00
Sinan
55099d89c1 Qt@4.8.7: fix build issue due to +phonon variant, disable phonon backend (#12579)
* fix build issue that shows up with +phonon variant, disable phonon backend gstreamer until it is setup

* provide in code explanation
2019-08-29 12:24:17 -05:00
Christoph Junghans
ae70c75e3c
portage: fix linkage against openblas (#12641) 2019-08-29 07:14:13 -06:00
Pariksheet Nanda
300d9d5a62 hdf5: patch out mpicxx lib when +mpi~cxx fixes #12586 (#12640) 2019-08-28 21:49:52 -05:00
健美猞猁
85e13ebc03 bowtie package: add version 1.2.3 (#12593)
* Only apply issue-87.patch for versions before 1.2.3
* 1.2.3 builds fine with gcc@8:, but 1.2.2 and 1.2.2_p1 both fail
  (with or without the patch) so the conflict is updated to exclude
  only these two versions.
2019-08-28 18:46:22 -07:00
Julien Loiseau
eee07522fa Correcting FleCSI package (#12629)
* Adding flecsph package

* Correcting header

* Boost version update

* Correcting Flake8 errors

* Correcting headers

* Develop preferred in FleCSI
2019-08-28 19:44:45 -06:00
Sinan
e0aa439d3b New package: py-pycuda (#12592) 2019-08-28 18:36:25 -07:00
Sinan81
5bf5a58116 new package: py-pyglet 2019-08-28 18:32:51 -07:00
Sinan
4aa5928311 New package: py-wand (#12590) 2019-08-28 18:32:08 -07:00
Sinan
bd1a837bee New package: py-planar (#12589) 2019-08-28 18:25:49 -07:00
Adam J. Stewart
9b7ccbab86
Add py-numpy 1.17.1 (#12618) 2019-08-28 10:32:56 -05:00
Adam J. Stewart
91f05dd599
Add py-scipy 1.3.1 (#12620) 2019-08-28 10:32:23 -05:00
Sinan
1ccd7e5a89 New package: py-nose2 (#12522) 2019-08-27 18:18:14 -07:00
Sinan
953f2a3f5d New package: py-liblzma (#12549) 2019-08-27 17:29:10 -07:00
Stephen Hudson
cd5b97f3fd libensemble package: add version 0.5.2 (#12514)
* Make mpi, scipy, petsc4py, and nlopt support optional
* Later versions depend on python@3.5:
* Versions before 0.4.1 must build with MPI: add a conflict for
  @:0.4.1~mpi
2019-08-27 16:39:43 -07:00
Hironori-Yamaji
bf7cb3dca9 New package: openfdtd (#12498) 2019-08-27 16:32:18 -07:00
Julien Loiseau
02bb1d5ec6 Adding FleCSPH package. (#12525)
* Adding flecsph package

* Correcting header

* Boost version update

* Correcting Flake8 errors

* Correcting headers
2019-08-27 14:50:31 -06:00
Geoffrey Oxberry
72ad072422 cuda: add conflict with macOS Mojave (#12570) 2019-08-27 10:36:07 -07:00
Greg Becker
dce9fc4d63 libxml2: pass location for libiconv to build system (#12588) 2019-08-27 09:29:01 -06:00
Geoffrey Oxberry
4b767b83a9 raja~openmp: explicitly disable OpenMP in CMake (#12572)
Before this commit, CMake would still attempt to detect OpenMP, even
if RAJA were being installed with `spack install raja~openmp`, because
the option `ENABLE_OPENMP` is set to "On" by default. This commit
explicitly disables OpenMP when the Spack install spec contains
'~openmp`, ensuring that CMake does not attempt to detect and link
with OpenMP.
2019-08-27 14:00:40 +02:00
Geoffrey Oxberry
59486ad072 gtksourceview: add GIR file search path (#12569) 2019-08-27 10:32:44 +02:00
Geoffrey Oxberry
ee710fd170 librsvg: new package (#12567) 2019-08-27 10:30:45 +02:00
Geoffrey Oxberry
e891cc49d5 cairo: add gobject variant (#12568) 2019-08-27 10:29:50 +02:00
Sinan
b1d24d5673 New package: py-pytools (#12553) 2019-08-26 19:00:06 -07:00
Sinan81
b74b36901e new package: py-scp 2019-08-26 18:54:32 -07:00
Sinan81
85cafffec4 new package: py-ratelim 2019-08-26 18:53:49 -07:00
brietzke
f540afeed7 Motif package: add jpeg dependency (#12559) 2019-08-26 18:52:22 -07:00
Sinan
9a54139a2d New package: py-sgp4 (#12557) 2019-08-26 18:51:33 -07:00
brietzke
8f771acc1e json-fortran: add new version 7.1.0 2019-08-26 18:47:56 -07:00
Sinan
411b011578 New package: py-pyjwt (#12532) 2019-08-26 15:45:56 -07:00
Sinan
0ec55b093e New package: py-overpy (#12533) 2019-08-26 15:44:57 -07:00