Commit graph

11069 commits

Author SHA1 Message Date
Satish Balay
8c165494f2
hypre: add superlu-dist variant (#10985)
- add a patch to fix build error with superlu-dist
2019-03-24 22:16:47 -05:00
Satish Balay
d7e984bcf8
amrex: current @develop - and future releases require cmake@3.13 or higher (#10953) 2019-03-24 22:15:49 -05:00
Navdeep Rana
fb946e51a4 Added a package for chapel. (#11002)
* Added a package for chapel.

* flake8 compliance.
2019-03-24 17:18:19 -05:00
Xavier Delaruelle
95a0e9c693 environment-modules: add version 4.2.3 (#11003) 2019-03-24 17:17:50 -05:00
Denis Davydov
64acce557d petsc: workaround xcode stub-out-of-sync issue (#10999) 2019-03-24 10:38:40 -05:00
Daryl W. Grunau
7081dba9ee Packages/zoltan (#10432)
* serialize the F90 interface build

* serialize the F90 interface build
2019-03-23 13:38:29 +01:00
Stephen McDowell
878b122f45 add ninja v1.9.0 (#10994) 2019-03-22 10:05:14 -05:00
Eric Martin
ec45c22808 netgen: update broken URL (#10882)
* netgen: update broken URL

* netgen: fix url_for_version URL
2019-03-22 10:01:07 -05:00
Michael Kuhn
b6185d4ad7 openfoam-com: Fix flex dependency (#10956)
openfoam-com needs flex's FlexLexer.h, which can only be found if flex
is also a link dependency.
2019-03-22 12:46:53 +01:00
Eric Martin
ba5f37ee26 vdt: Add version 0.4.3 (#10982) 2019-03-22 11:57:30 +01:00
Michael Kuhn
ea227b9974 py-hpccm: New package (#10957) 2019-03-22 11:39:10 +01:00
Eric Martin
1599dce2ae canu: Add versions 1.8 and 1.7 (#10978) 2019-03-22 11:27:36 +01:00
Eric Martin
563e573b13 megahit: Add version 1.1.4 (#10979) 2019-03-22 11:19:28 +01:00
Eric Martin
d9eaad80c3 racon: Add versions 1.3.2 and 1.3.1 (#10980) 2019-03-22 11:19:13 +01:00
Eric Martin
487fa5713c trimgalore: Add versions 0.6.0 and 0.6.1 (#10981) 2019-03-22 11:18:45 +01:00
Eric Martin
46e0ad3269 bowtie: Add missing zlib dependency (#10984) 2019-03-22 11:17:16 +01:00
Matthias Diener
133d4ca9ce gdb: add version 8.2.1 (#10988) 2019-03-22 11:00:28 +01:00
Hadrien G
cc8a086082 ACTS: add version 0.8.2 (#10974) 2019-03-22 10:59:45 +01:00
Denis Davydov
6d971c4493 add ginkgo package, use it in dealii along with symengine (#10917) 2019-03-22 10:58:48 +01:00
Shahzeb Siddiqui
724acb6421 typo in documentation (#10976) 2019-03-21 14:29:40 -05:00
Stephen McDowell
7bc899d9ca add eigen v3.3.7 (#10955) 2019-03-21 12:16:26 -05:00
George Hartzell
aa1e70aab1 Minor commentary correction, TCL -> lmod (#10951) 2019-03-21 11:17:41 +01:00
Stephen McDowell
70e436e932 prevent UnboundLocalError when sourcing files (#10950)
Patch extracted from #7536 courtesy of @mgsternberg
2019-03-21 11:08:29 +01:00
Patrick Schratz
bffe3a605f update R to v3.5.3 (#10928)
* update R to v3.5.3
2019-03-20 13:06:57 -05:00
Michael Kuhn
e02eb3633e mpich: Do not use libfabric@1.7: with ch3 ofi netmod (#10919) 2019-03-20 10:01:39 -07:00
Michael Kuhn
c66a24f22d pkgconf: add 1.6.0 (#10942) 2019-03-20 14:10:11 +01:00
bfovet
81f699eca3 Update GMSH to 4.2.2 with OpenMP variant (#10914) 2019-03-20 05:12:57 +01:00
Patrick Schratz
f51bce5636 saga-gis: new versions up to 7.3.0 (#10922) 2019-03-20 05:03:14 +01:00
Denis Davydov
de3ff1a96b gettext: fix dependency type of xz (#10935) 2019-03-20 04:57:08 +01:00
sknigh
e717230bf8 added yara (#10901) 2019-03-20 04:55:02 +01:00
fcannini
9a8c4cf071 gromacs: make sure cuda support is disabled when cuda=False (#10936)
* abinit: Fix building with hdf5/netcdf.

* gromacs: Fix attempt to build with cuda support when 'cuda=False'

If for some reason there's a cuda toolkit installed by other means,
(i.e. not by spack) cmake will still try to build with cuda support,
even though 'cuda=False' is the default of the spec.

* Revert "abinit: Fix building with hdf5/netcdf."

This reverts commit e16f725e37b91193fe519b1821446c76ab551928.

This should not be here.
2019-03-20 04:54:03 +01:00
Michael Kuhn
1db5a3e0a3 libfabric: add 1.6.2 (#10918) 2019-03-20 04:52:50 +01:00
Matthias Diener
d935048982 git: add version 2.21.0 (#10937) 2019-03-20 04:49:47 +01:00
Michael Kuhn
b48a6f22be strace: add 5.0 (#10940) 2019-03-20 04:48:13 +01:00
Michael Kuhn
09d57d8cee libeatmydata: new package (#10941) 2019-03-20 04:47:45 +01:00
Chris Green
9ad02685d9 Fix help text for --no-checksum. (#10932) 2019-03-19 15:02:06 -05:00
Kelly (KT) Thompson
a1eeeadfd8 Branson: provide new versions. (#10926)
* Branson: provide new versions.

+ Also update dependencies (newer version have fewer dependencies).

* fix style issue
2019-03-19 08:49:58 -06:00
Kelly (KT) Thompson
29ce8eb892 Draco: add variants (#10925)
* Draco: add variants

+ This package has many optional build dependencies that were not registered in
  older versions of this recipe.  I've added (and tested) this more complete
  list of optional dependencies: parmetis, superlu-dist, qt.

* fix style issues
2019-03-19 08:49:30 -06:00
Owen Solberg
3618d405b1 added checksum for new bowtie2 version (#10930) 2019-03-19 15:14:25 +01:00
Christoph Junghans
a6ccd99054
cabana: cuda backend (#10660) 2019-03-18 14:02:28 -06:00
Massimiliano Culpo
4aead5e35b
redis: new package (#10915)
Added versions from 4.0.11 to 5.0.3

closes #9180
2019-03-16 14:47:11 +01:00
Mark W. Krentel
e811e23f2e hpcviewer: new package (#10878)
* hpcviewer: new package

Add binary package for hpcviewer and hpctraceviewer for the Rice
hpctoolkit on Linux x86_64, ppc64 and ppc64le.

* ibm-java: add property 'home' so that spec['java'].home will work.

* Flake

* More flake.

* Test that the version, machine type pair exists before using it in the
sha dictionaries so that 'spack info' doesn't crash on unsupported
configurations.
2019-03-15 15:47:22 -05:00
Chris Green
6de6d5396c New package: mariadb-c-client (#7729)
* mariadb-c-client is a new package using the distinct, LGPL,
  MySQL-compatible client library from mariadb.com. It provides the
  virtual package mariadb-client
* mariadb is recorded as a provider of the mariadb-client virtual
* The mysql-client virtual package is also added, and mariadb-c-client
  is recorded as a provider for it
2019-03-15 14:12:30 -05:00
Adam J. Stewart
82e3380049
Add latest version and missing dependencies of MySQL (#10904)
* Add latest version and missing dependencies of MySQL

* m4 only needed on solaris
2019-03-15 14:01:54 -05:00
Christoph Junghans
4baf3d9d02 py-espressopp: add v2.0.2 (#10909) 2019-03-15 12:59:23 -05:00
Matthias Diener
dd09ab697b cmake: add version 3.14.0 (#10908) 2019-03-15 11:49:59 -05:00
Adam J. Stewart
cba5a8058e
Add ladot package (#10905) 2019-03-15 01:13:25 -05:00
Adam J. Stewart
4e6285a19b
Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
Chris Green
9b51fb09f1 Support VISUAL environment variable for editing. (#10898)
If the user has set the environment variable VISUAL, it will be used
in preference to EDITOR for all Spack editing activities. If VISUAL
is not set or fails (perhaps due to a lack of graphical editing
capabilities),EDITOR will be used instead. We fall back to one of
several common editors if neither bears fruit.

This feature has been tailored to:

* Provide identical behavior to the previous implementation in the
  case that VISUAL is not set.
* Not require any change to code utilizing the editor feature.
* Follow usual UNIX behavior concerning VISUAL and EDITOR.
2019-03-14 16:16:26 -05:00
Jordan Ogas
1d73868333 charliecloud: added version 0.9.8 (#10900) 2019-03-14 20:36:53 +01:00