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Author SHA1 Message Date
Patrick Gartung
4dc67b79aa
Replace direct call to patchelf with get_existing_elf_rpaths which handles exceptions. (#14929) 
* Replace direct call to patchelf with get_existing_elf_rpaths which handles exceptions.

* Remove unused patchelf definition.

* Convert to set.
 2020-02-13 11:34:20 -06:00
Massimiliano Culpo
681ad2ac44
hepmc: fixed wrong sha256 for latest versions (#14926) 2020-02-13 07:49:21 -06:00
Matthias Wolf
268f42bf7e
py-binaryornot: new package (#14906) 2020-02-13 11:42:29 +01:00
Matthias Wolf
856734b804
py-poyo: new package (#14909) 2020-02-13 10:07:29 +01:00
Matthias Wolf
7252066a32
py-jinja2-time: new package (#14910) 2020-02-13 10:07:07 +01:00
Matthias Wolf
06c85ea5bf
py-elasticsearch: added v7.5.1 and v6.4.0 (#14913) 2020-02-13 10:06:01 +01:00
Matthias Wolf
3dd844e597
py-clustershell: new package (#14914) 2020-02-13 10:03:45 +01:00
Matthias Wolf
fb482ae0c9
py-magic: new package (#14912) 2020-02-13 10:03:18 +01:00
Matthias Diener
a337d27874
gdb: added v9.1 (#14919) 2020-02-13 09:51:04 +01:00
Federico Ficarelli
de84bd3f24
hipsycl: new package and new 'sycl' virtual package (#14051) 2020-02-13 07:32:39 +01:00
eugeneswalker
5243d270d4 bmi depends on automake for build 2020-02-12 21:58:35 -08:00
noguchi-k
38303a6a79
macsio: cast JsonGetInt from int to unsigned int (#14736) 
* macsio: cast from int to unsigned int

* macsio: apply a patch only when version is 1.1
 2020-02-12 20:13:26 -06:00
Todd Gamblin
a7b43f1015 spack python: add -m option to run modules as scripts 
It's often useful to run a module with `python -m`, e.g.:

    python -m pyinstrument script.py

Running a python script this way was hard, though, as `spack python` did
not have a similar `-m` option.  This PR adds a `-m` option to `spack
python` so that we can do things like this:

    spack python -m pyinstrument ./test.py

This makes it easy to write a script that uses a small part of Spack and
then profile it.  Previously thee easiest way to do this was to write a
custom Spack command, which is often overkill.
 2020-02-12 16:45:41 -08:00
Chuck Atkins
90f3635afd
protobuf: Fix intel compiler failures. (#14916) 2020-02-12 16:21:43 -05:00
Jon Rood
7e50cec5a4
Adding Intel LLVM compiler (#13618) 
* Adding Intel LLVM compiler.

* Fixing some minor issues.

* Split build environment on run environment in intel-llvm.
 2020-02-12 12:30:04 -06:00
Dan Lipsa
ca66ab6901
Paraview: fix PYTHONPATH for static build. (#14648) 
* Fix PYTHONPATH for static build.

* Only for the latest version.
 2020-02-12 13:24:09 -05:00
Axel Huebl
3b2c534e73
openPMD-api: Build Env Fix & Dev (#14904) 
- fix a missing `env.` prefix in the build environment.
- rename development branch to same name as in git
 2020-02-12 10:02:01 +01:00
Axel Huebl
b5a3ee636b
WarpX: master is the new develop (#14898) 
WarpX removed the `dev` branch in favor of a simpler,
`master`-centric development model.
`master` is the new development branch and there is no
stable branch anymore (we use tags and release branches
instead).
 2020-02-11 20:47:50 -08:00
victorusu
78ce1c7ce4
New package: ReFrame (#14737) 2020-02-11 17:51:26 -08:00
Hadrien G
c8cb480eb7
ROOT: Add Pythia8 support (#14790) 2020-02-11 17:38:22 -08:00
darmac
cf120d7441
OpenCV package: add versions 4.2.0, 4.1.2, and 4.1.1(#14814) 2020-02-11 17:34:44 -08:00
Hadrien G
947dabc356
[dd4hep] Make DDDigi work with current TBB releases (#14791) 
Add patch for DDDigi's broken TBB support. The issue is fixed in
DD4hep master so the patch is only required for 1.11.0
 2020-02-11 17:17:05 -08:00
Sajid Ali
2c63ea49d1
New package: libvips (#14794) 2020-02-11 17:02:39 -08:00
darmac
630611a786
libdrm: add version 2.4.100 (#14809) 2020-02-11 16:57:18 -08:00
codeandkey
78f16d703d r-truncdist: new package at 1.0-2 2020-02-11 16:52:51 -08:00
Todd Gamblin
c56c4b334d bugfix: spack -V should use working_dir() instead of git -C 
- `git -C` doesn't work on git before 1.8.5
- `working_dir` gets us the same effect
 2020-02-11 16:52:06 -08:00
Jen Herting
582e7ce2c8 [mono] add version 6.8.0.105 2020-02-11 16:49:35 -08:00
Scott Wittenburg
c2885990b8
Fix intel-mkl package (#14856) 
* Add cpio package

* intel-mkl: Depend on cli tool needed during build
 2020-02-11 16:21:49 -06:00
Seth R. Johnson
5c33f638d7
Fix QT4 platform detection for linux clang (#14891) 
* Fix QT4 platform name for linux clang

* Fix clang compiler flags on QT4
 2020-02-11 14:00:02 -06:00
Frédéric Simonis
e8b6c40b31
precice: add version 2.0.0 (#14842) 
Added python3 dependency
Added support for new CMake variables
 2020-02-11 10:06:03 +01:00
Matthias Diener
7706b76d3a
unifdef: added new package (#14880) 2020-02-11 10:03:44 +01:00
Christoph Junghans
1a41ec766a
heffte: added v0.2 (#14881) 2020-02-11 10:02:17 +01:00
darmac
35df75ee77
hepmc: added versions up to v3.2.0 (#14805) 2020-02-11 09:46:59 +01:00
Brian Van Essen
490508d324
Hydrogen: update dependency on aluminum (#14760) 
* Hydrogen now depends on `aluminum +nccl` vs. `aluminum +mpi_cuda`
* Hydrogen: Simplify Mac OS OpenMP-detection logic
* Aluminum: Add Mac OS OpenMP-detection logic
* LBANN: depend on conduit@0.4.0: instead of conduit@master
 2020-02-10 12:13:47 -08:00
Massimiliano Culpo
357786ce6b
Spack find: fix queries that specify dependencies (#14757) 
Fixes #10019

If multiple instances of a package were installed in a single
instance of Spack, and they differed in terms of dependencies, then
"spack find" would not distinguish specs based on their dependencies.
For example if two instances of X were installed, one with Y and one
with Z, then "spack find X ^Y" would display both instances of X.
 2020-02-10 11:22:21 -08:00
Peter Scheibel
4e32505770
libedit package: add version 3.1-20191231 (#14851) 
This new version of libedit can make use of an ncurses dependency
built with +termlib (which moves some symbols into a separate
libtinfo).
 2020-02-10 10:44:52 -08:00
Glenn P Johnson
37a6b8d54f Fix vim build with ^ncurses+termlib 
This PR will set the approriate library if ncurses is built with a
separate tinfo library.
 2020-02-10 10:25:35 -08:00
darmac
c77eeca61e icedtea: added versions up to v3.9.0 (#14806) 2020-02-10 11:08:45 +01:00
Glenn Johnson
745a843911 New package: r-biomartr (#14812) 
This PR creates the r-biomartr package as well as needed new packages
and updates.

- new dependency: r-philentropy
- update: r-curl
 2020-02-10 11:08:04 +01:00
Hadrien G
cb3dbea198 acts-core: added v0.16.0 (#14839) 
* Adapt to ACTS v0.16

* ACTS uses the DD4hep XML components nowadays
 2020-02-10 11:06:56 +01:00
Glenn Johnson
8aa1eba2e0 New package: r-watermelon (#14864) 
This PR creates the r-watermelon package, along with dependencies.

- new package: r-fdb-infiniummethylation-hg19
- new package: r-illuminahumanmethylation450kanno-ilmn12-hg19
- new package: r-lumi
- new package: r-methylumi
- new package: r-roc
- new package: r-txdb-hsapiens-ucsc-hg19-knowngene
- updated package: r-matrixstats, new version needed as a dependency
 2020-02-10 10:49:34 +01:00
Glenn Johnson
1ed0efec7d New package: r-suppdists (#14865) 2020-02-10 10:44:17 +01:00
Glenn Johnson
bd442e884a New package: r-imager (#14866) 
This PR adds the r-imager package and dependencies.

- new package: r-bmp
- new package: r-readbitmap
 2020-02-10 10:44:00 +01:00
Glenn Johnson
ad914c28d7 New package: r-proj (#14872) 2020-02-10 10:43:27 +01:00
Glenn Johnson
d00a3eda6b New package: r-proj4 (#14871) 2020-02-10 10:42:32 +01:00
Glenn Johnson
22df37c328 New package: r-pscbs (#14867) 
This PR adds the r-pscbs package along with new dependencies and updates.

- new package: r-aroma-light
- new package: r-r-cache
- updated package: r-r-oo
 2020-02-10 10:41:56 +01:00
Glenn Johnson
716978e00c New package: r-copula (#14874) 
This PR adds the r-copula package and dependencies.

- new package: r-adgoftest
- new package: r-gsl
- new package: r-pspline
- new package: r-stabledist
 2020-02-10 10:40:47 +01:00
Glenn Johnson
42c829adb4 New package: r-gsalib (#14873) 2020-02-10 10:38:44 +01:00
Kai Torben Ohlhus
4d173579cb openblas: added v3.8.0 (#14875) 2020-02-10 10:35:29 +01:00
darmac
f274d89c33 xterm: added versions up to v353 (#14829) 2020-02-10 09:44:50 +01:00