Commit graph

14773 commits

Author SHA1 Message Date
Matthieu Dorier
8b52f9f37d
unqlite: Patching unqlite to be able to build a shared library (#15830)
* Patching unqlite to be able to build a shared library

* Correcting a whitespace for flake8 to pass

* added comment about PR on unqlite

* extra commit to force github to merge
2020-04-02 17:15:45 -05:00
iarspider
144557e945
c-blosc: Add variants to disable building tests and benchmarks (#15789)
* Add variants to disable building tests and benchmarks

* Flake8

* Update package.py

* Update package.py

* Update package.py
2020-04-02 08:52:37 -05:00
Toyohisa Kameyama
1f6f395337
ppOpen-APPL/BEM: added new package at v0.5.0 (#15819) 2020-04-02 12:08:09 +02:00
健美猞猁
d2b6ef98f1
py-pyfits: added new package at v3.5 (#15825) 2020-04-02 12:07:22 +02:00
健美猞猁
d921974db1
py-ephem: added new package at v3.7.71 (#15438) 2020-04-02 11:13:17 +02:00
Kelly (KT) Thompson
8078089914
cmake: added v3.17.0 (#15822) 2020-04-02 11:06:21 +02:00
Jonathon Anderson
7d44a0090d
cryptsetup: added v2.2.2, v2.2.3 and v2.3.1 (#15823)
Also confined the included patch to the earlier versions, as
indicated.
2020-04-02 10:55:20 +02:00
Jonathon Anderson
60f29a9f80
qt: added v5.14.2 (#15824) 2020-04-02 10:54:05 +02:00
Michael Bentley
c3c057f2b3
package: update flit and py-pyelftools versions (#15817)
* Update flit package to v2.1.0 and add dependencies

* flit: comment out bash dependency

The host system should have bash available and compiling bash through
spack failed for me.  I'm not sure if binutils and coreutils should
be listed as dependencies as well.

* Add new version of py-pyelftools

* py-pyelftools: add py-setuptools as a build dependency

* Address review comments
2020-04-01 22:05:58 -05:00
Carson Woods
bb0c79b504
package: add variants to cgns (#15816)
* Add additional configuration options for cgns

* Fix syntax errors

* Further syntax fixes

* Convert tabs to spaces

Co-authored-by: Carson Woods <carwood@sandia.gov>
2020-04-01 20:39:57 -05:00
Carson Woods
9b1820c2de
package: add static library build option for yaml-cpp (#15814)
* Add static build option

* Fix flake8 errors and standardize spacing of build commands

Co-authored-by: Carson Woods <carwood@sandia.gov>
2020-04-01 20:39:04 -05:00
takanori-ihara
814996eebc
New package:dhpmm-f (#15798)
* New package:dhpmm-f

* Remove unnecessary line
2020-04-01 20:38:09 -05:00
Todd Gamblin
5a814ad0c5
hdf5: prefer version 1.10 for now (#15810)
HDF5 1.12 broke backward compatibility, so we're preferring version 1.10
for now.  Packages that need the new API should specify:

    depends_on("hdf5@1.12:")

to be explicit. We can eventually change the preference, but at the
moment most libraries have not udpated to use the new HDF5.
2020-04-01 20:36:04 -05:00
Jonathon Anderson
e260eb4775
Version bump for slurm package (#15790) 2020-04-01 16:51:59 -05:00
Christoph Junghans
37c0039eb9
openssl: add v1.1.1f (#15802) 2020-04-01 13:57:19 -06:00
Erik Schnetter
8552efe54f
amrex: New version 20.04 (#15808) 2020-04-01 13:41:23 -05:00
Robert Pavel
47f135534c
Added v3 of Laghos (#15806)
* Added v3 of Laghos

Added v3 of Laghos as per
https://github.com/CEED/Laghos/blob/v3.0/README.md

* Update var/spack/repos/builtin/packages/laghos/package.py

Changed develop->master as per PR

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Made Metis Dependency Explicit

Added explicit metis dependency

* Folded @develop Laghos Deps in to @3.0:

Theoretically there will be a difference between develop and 3.0: in the
future but currently there is not

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-01 13:32:15 -05:00
Adam J. Stewart
64b14b64c0
OpenDX: add new package (#15737) 2020-04-01 13:30:03 -05:00
Robert Pavel
6ad717cc9d
Fixed Remaining Shared Objects in Static Lua (#15787)
Fixed removal of remaining references and symlinks to so files when
building lua with static libraries
2020-04-01 12:31:01 -05:00
Nichols A. Romero
917c0a0efd
Minor LLVM libomptarget fixes (#15788)
* Add myself as a maintainer

* This was a regression that occured in previous PR. Flang has been excised from LLVM for now until f18 is merged upstream.

* Libraries only needed when a GPU backend is present.
2020-04-01 12:28:36 -05:00
Sinan
67fbf257f0
Package/sfcgal fix typo (#15796)
* fix typo in dependency definition

* remove arbitrary dependency constraint

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-04-01 12:05:53 -05:00
Andrew Gaspar
58cb2e5092
Add libgit2 1.0.0 and 0.28.5 (#15801) 2020-04-01 12:02:55 -05:00
Greg Sjaardema
c3e8825f8e
Spelling fixes (#15805)
* Spelling fixes

* spelling fixes

* spelling fixes

* spelling fixes

* spelling fix

* spelling fix

* spelling fix

* spelling fixes

* spelling fix
2020-04-01 12:02:26 -05:00
Axel Huebl
c430ad91c3
pybind11 2.5.0: Include Change (#13905)
Add pybind11, version 2.5.0.
This release adds improved include helpers.
2020-04-01 08:58:09 -07:00
Sinan
49aa28790c
new package: py-spatialite (#12597)
* new package: py-spatialite

* make flake8 happy

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-04-01 08:09:39 -05:00
Dr. Christian Tacke
97cfef320c
slurm: new version, system configuration path (#15466)
* Add version 18-08-9-1
* Add variant to allow setting the sysconfdir: See below

About sysconfdir:

slurm has a server and a client.
To use the correct communication channel, the client needs
to be able to read the correct config.  This config is in
PREFIX/etc.

Let's assume one has the server part installed as a system
package.  This generally is a good idea, so that the server
gets started during boot.  This means, that the config is
in /etc/slurm.

If one now wants to use the client part (library!) via
spack, one has a problem: spack's slurm looks in
SPACK-PACKAGE-PREFIX/etc for the config.

There needs to be a way to let the spack installed package
use the system's config.

So add a variant to override the path during build:
sysconfdir=/etc/slurm.

This is much like what happened in #15307 for munge.
2020-04-01 08:07:41 -05:00
Adam J. Stewart
a4b3edd68a
Allow Spack Environments with '-h' in the name (#15429)
If a user invoked "spack env activate example-henv", Spack would
mistakenly interpret the "-h" from "example-henv" as the "-h" option.
This commit allows users to create and activate environments with
"-h" in the name.

This issue existed for bash shell support as well as csh support, and
this commit addresses both, along with some other unrelated csh
support issues.
2020-03-31 16:57:14 -07:00
Phil Tooley
315faf8b77
Extrae: update package shasum and binutils version (#15516)
Co-authored-by: telemin <telemin@protonmail.ch>
2020-03-31 16:14:43 -07:00
Greg Becker
336191c251
packages.yaml: allow virtuals to specify buildable: false (#14934)
Currently, to force Spack to use an external MPI, you have to specify `buildable: False`
for every MPI provider in Spack in your packages.yaml file. This is both tedious and
fragile, as new MPI providers can be added and break your workflow when you do a
git pull.

This PR allows you to specify an entire virtual dependency as non-buildable, and
specify particular implementations to be built:

```
packages:
all:
    providers:
        mpi: [mpich]
mpi:
    buildable: false
    paths:
        mpich@3.2 %gcc@7.3.0: /usr/packages/mpich-3.2-gcc-7.3.0
```
will force all Spack builds to use the specified `mpich` install.
2020-03-31 16:09:08 -07:00
Adam J. Stewart
8748160984
GMT: add 6.0.0 (#15785) 2020-03-31 15:44:17 -05:00
Adam J. Stewart
25a65638ff
autoconf-archive: add new package (#15782) 2020-03-31 13:02:20 -05:00
Adam J. Stewart
663c3d21b5
JasPer: add 2.0.16 (#15781) 2020-03-31 12:08:26 -05:00
Massimiliano Culpo
7357b7023e
Update link for codecov's browser extensions (#15779) 2020-03-31 09:49:25 -05:00
Ben Morgan
77e1384902
geant4: new version 10.6 plus simplifications (#15447)
* geant4: new version 10.6 plus simplifications

Add new 10.6.0 release, migrating download of source to use Geant4's
public release repo on CERN GitLab. Change versioning scheme to use
clearer and standard semantic scheme.

Update geant4-data and g4XXX data packages with new versions. Migrate
geant4-data as a BundlePackage of the g4XXX packages, installing links
to each under a single directory under share for geant4-data. Ensure
each g4XXX package exports the environment variable pointing to its
location expected by Geant4.

Remove "data" variant from Geant4 package and always use geant4-data.

Simplify cxxstd variant transport to dependencies.

* g4<DATA>: Use self to resolve correct prefix

* geant4, data: Fix flake8 errors

* g4photonevaporation: flake8 fix

* geant4: vecgeom version depends_on

Geant4 major.minor versions have specific dependencies on vecgeom
versions. Add missing vecgeom version for geant4 10.5, and match
version requirements for vecgeom in geant4 depends_on.

* geant4: c++17 patch specific for 10.4.3

* geant4: simplify geant4-data setup

* geant4: Use new define_from_variant function

* geant4: fix flake8 errors
2020-03-31 09:54:31 +01:00
Toyohisa Kameyama
628516c761
ppOpen-APPL/FVM: new package. (#15772)
* ppOpen-APPL/FVM: new package.

* copy_tree -> install_tree.
2020-03-30 23:02:14 -05:00
Satish Balay
864960937d
superlu-dist: add new version 6.3.0 (#15766) 2020-03-30 19:52:31 -05:00
Ryan Mast
8bc6b290e5
helics: add new package (#15763)
* helics: add new package

* Remove FIXME boilerplate

* Use open @master: verison range for git dependency and remove mpi fix branch version

* Add blank line after spack import
2020-03-30 19:50:53 -05:00
Satish Balay
a96b742797
Balay/petsc 3.13.0 (#15767)
* petsc: add 3.13.0 (using petsc-lite) and 3.12.5

* petsc@3.13.0: update hdf5 and superlu-dist dependencies

* flake8 fix

* fixes for comments

Co-authored-by: Jed Brown <jed@jedbrown.org>
2020-03-30 19:50:29 -05:00
Adam J. Stewart
3c18d2a0e8
py-torch: make sure unit tests are registered (#15765) 2020-03-30 17:44:58 -05:00
Axel Huebl
3f50b9e08d
CUDA 10.1+ supports ICC 19.0 (#15764)
Fix the CUDA-ICC conflict check.
Simplify the XL 17 check.
2020-03-30 16:24:05 -05:00
Adam J. Stewart
ccc7c9b86d
py-horovod: fix compilation of ~cuda (#15719)
* py-horovod: fix compilation of ~cuda

* Rewrite py-horovod with only 3 variants

* Add upstream patch to workaround compilation issue
2020-03-30 16:09:17 -05:00
Andrew W Elble
6747ecde16
py-onnx: depends on cmake >= 3.1 (#15762)
* py-onnx: depends on cmake >= 3.1

* Update var/spack/repos/builtin/packages/py-onnx/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-30 14:58:57 -05:00
Amjad Kotobi
0c7fff6065
Update git version to 2.26.0 (#15756)
* Update git version to 2.26.0

* Fix1
2020-03-30 11:56:40 -05:00
Robert Pavel
8d1e88658d
Aded Option to Disable Shared Lua library Generation (#15758)
* Aded Option to Disable Shared Lua library

Added option to disable generation of shared object library for lua to
avoid build issues on static only platforms

* Fixed Flake8 Issue with Lua Spackage

Fixed indentation issue with lua spackage
2020-03-30 11:56:23 -05:00
Hadrien G
abdada03a8
Add ACTS v0.20 and take move to GitHub into account (#15757) 2020-03-30 16:48:36 +01:00
Fabian Brandt
605b7b5d23
New package: libnetworkit (#15714)
* New package libnetworkit

* Fixed artificial dependency restriction
2020-03-30 08:17:21 -05:00
Carson Woods
e9d573d110
package: add additional configuration options to lmod (#15682)
* Add further configuration options

* Convert auto-swap to auto_swap. Might eventually switch to key-value pair instead.
2020-03-30 08:14:07 -05:00
Carson Woods
05b7ec48c5
Add additional config options to gdb (#15754) 2020-03-29 23:05:24 -05:00
Carson Woods
3cbc26cfa6
Add additional configuration options for binutils (#15753) 2020-03-29 23:05:11 -05:00
Todd Gamblin
3310eaab99
spack-python should exec spack python (#15738)
The current implementation of `spack-python` will leave an extra shell
around while it runs.  That shell should really replace itself with
spack.

- [x] add exec to spack-python script
2020-03-29 19:38:15 -07:00