James Beal
8345c6fb85
delly2: add v1.2.6 ( #42745 )
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Co-authored-by: James Beal <jb23@sanger.ac.uk>
2024-02-22 07:28:40 +01:00
Xavier Delaruelle
3f23634c46
environment-modules: add version 5.4.0 ( #42763 )
2024-02-22 07:10:55 +01:00
MatthewLieber
d5766431a0
mvapich: add v3.0 ( #42756 )
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Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2024-02-22 07:09:14 +01:00
Martin Lang
1388bfe47d
bigdft-atlab: add v1.9.3, v1.9.4 ( #42643 )
2024-02-22 07:05:00 +01:00
dependabot[bot]
579dec3b35
build(deps): bump urllib3 from 2.2.0 to 2.2.1 in /lib/spack/docs ( #42757 )
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Bumps [urllib3](https://github.com/urllib3/urllib3 ) from 2.2.0 to 2.2.1.
- [Release notes](https://github.com/urllib3/urllib3/releases )
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst )
- [Commits](https://github.com/urllib3/urllib3/compare/2.2.0...2.2.1 )
---
updated-dependencies:
- dependency-name: urllib3
dependency-type: direct:production
update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-02-22 07:01:45 +01:00
Martin Lang
9608ed9dbd
cgal: add v5.5.3 ( #42650 )
2024-02-22 06:58:03 +01:00
Wouter Deconinck
42b739d6d5
podio: depends_on py-graphviz type run (for podio-vis) ( #42787 )
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The podio-vis tool depends at run-time on py-graphviz, https://github.com/AIDASoft/podio/blob/master/tools/podio-vis#L10 .
2024-02-22 06:14:38 +01:00
Matthieu Dorier
91a0c71ed1
nlohmann-json-schema-validator: added version 2.2.0 and 2.3.0 ( #42792 )
2024-02-22 06:11:29 +01:00
Dom Heinzeller
6ee6fbe56b
ecflow: apply ctsapi_cassert.patch for all compilers ( #42793 )
2024-02-22 06:09:54 +01:00
Mikael Simberg
be4eae3fa8
pika: add sanitizers variant ( #42778 )
2024-02-22 05:54:33 +01:00
Harmen Stoppels
ad70b88d5f
spack gc: do not show uninstalled but needed specs ( #42696 )
2024-02-22 05:21:39 +01:00
eugeneswalker
c1d230f25f
e4s ci stacks: add python packages ( #42774 )
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* e4s ci stacks: add python packages
* comment out failing specs
2024-02-21 20:59:05 -07:00
John W. Parent
4bc52fc1a3
env activate: use Win-compatible print on Windows ( #42755 )
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Use "echo" instead of "printf" on Windows.
2024-02-21 11:02:04 -08:00
John W. Parent
7d728822f0
Windows: fix error with can_symlink check ( #42753 )
2024-02-21 10:18:25 -08:00
John W. Parent
e96640d2b9
cgns package: don't use MPI wrappers on Windows ( #42750 )
2024-02-21 10:10:48 -08:00
Alex Richert
e196978c7c
Add 'docs' variant to rust-bootstrap ( #42768 )
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* Add 'docs' variant to rust-bootstrap
* remove docs for rust-bootstrap
2024-02-21 11:04:13 -07:00
Harmen Stoppels
de3d1e6c66
rocm: removal of deprecated <5.1 versions ( #42676 )
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The package `aomp` is removed entirely, as it was too outdated to have non-deprecated dependencies.
2024-02-21 14:07:40 +01:00
Massimiliano Culpo
2d8e0825fe
binutils: add v2.42 ( #42760 )
2024-02-20 23:03:51 -08:00
pauleonix
d5c06c4e2c
asio: add patches 1.28.2 and 1.28.1 ( #42762 )
2024-02-20 23:02:43 -08:00
Wouter Deconinck
0d92b07dbd
pythia6: deal with dead pythiasix.hepforge.org ( #42162 )
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* pythia6: deal with dead pythiasix.hepforge.org
* pythia6: rm main81.f from CMakeLists.txt
* [@spackbot] updating style on behalf of wdconinc
---------
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-02-20 15:30:54 -06:00
Auriane R
6cfcbc0167
Update conflict between stdexec and clang ( #42765 )
2024-02-20 13:32:54 -07:00
Massimiliano Culpo
f9e9fab2da
clingo: add v5.7.1 ( #42758 )
2024-02-20 07:49:49 -08:00
Massimiliano Culpo
b3f790c259
btop: add v1.3.2 ( #42759 )
2024-02-20 07:46:35 -08:00
George Young
b5b5130bed
pblat: add new package ( #42517 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-19 22:28:27 +01:00
Vicente Bolea
d670a2a5ce
adios2: update kokkos dependency ( #42621 )
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-19 11:54:08 -07:00
Harmen Stoppels
0ee3a3c401
Use relative target in symlinks to modified files in view ( #42699 )
2024-02-19 16:33:38 +01:00
Dave Keeshan
ad6dc0d103
verible: add v0.0-3539-g9442853c ( #42628 )
2024-02-19 14:40:23 +01:00
Alex Richert
6e373b46f8
scorep: specify binutils headers and libs ( #42656 )
2024-02-19 14:35:22 +01:00
Thomas-Ulrich
abe617c4ea
hipsycl: update package ( #42518 )
2024-02-19 14:34:05 +01:00
Satish Balay
a0e80b23b9
DTK: specify MPI compilers ( #42592 )
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Co-authored-by: balay <balay@users.noreply.github.com>
2024-02-19 14:24:28 +01:00
Dom Heinzeller
4d051eb6ff
ecflow: fix compilation with Intel classic compilers ( #42622 )
2024-02-19 14:23:09 +01:00
kinagaki-fj
0d89083cb5
omm-bundle: add new package ( #42304 )
2024-02-19 14:16:39 +01:00
Alex Richert
23e586fd85
ferret: add support for gcc@10: ( #42660 )
2024-02-19 14:14:11 +01:00
Richard Berger
c2b116175b
kokkos: disable CUDA_MALLOC_ASYNC on cray-mpich ( #42661 )
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Co-authored-by: Daniel Arndt <arndtd@ornl.gov>
2024-02-19 13:52:48 +01:00
Mikael Simberg
a1f90620c3
umpire: depend on camp~rocm when umpire itself has ~rocm ( #42701 )
2024-02-19 11:58:31 +01:00
Harmen Stoppels
668879141f
remove a few redundant calls to setup_run_environment ( #42718 )
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Any package `X` used as `depends_on("x", type="build")` will have
`X.setup_run_environment(env)` called, because it has to be able to
"run" in the build environment.
So there is no point in calling `setup_run_environment` from
`setup_dependent_build_environment`.
Also it's redundant to call `setup_run_environment` in
`setup_dependent_run_environment`, cause (a) the latter is called _for
every parent edge_ instead of once per node, and (b) it's only called
after `setup_run_environment` is called anyways. Better to call
`setup_run_environment` once and only once.
2024-02-19 11:43:45 +01:00
Adam J. Stewart
267defd9d3
py-matplotlib: add v3.8.3 ( #42698 )
2024-02-19 11:40:18 +01:00
Ken Raffenetti
603d3f2283
mpich: Remove invalid pmi option ( #42686 )
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pmi=off is not a valid configuration option. MPICH cannot function
without a PMI library. Fixes #42685 .
2024-02-19 11:38:49 +01:00
James Beal
02bfbbe269
Bump for new version of bedtools2 ( #42034 )
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Co-authored-by: James Beal <jb23@sanger.ac.uk>
2024-02-19 11:35:26 +01:00
Alec Scott
44d08d2c24
gnupg: make discoverable as external ( #42736 )
2024-02-19 11:27:39 +01:00
AMD Toolchain Support
c6faab10aa
CP2K: fix multiple use of spec["fftw"] ( #42724 )
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fftw object was originally created with spec["fftw:openmp"], but
referencing spec["fftw"] overwrites the 'last_query' in the spec object,
so later use of fftw.libs was not returing FFTW OpenMP libs.
Also allow the post-install fixup to support amdfftw as well as fftw.
Co-authored-by: Branden Moore <branden.moore@amd.com>
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
2024-02-19 11:21:11 +01:00
Geoffrey Lentner
baa203f115
duckdb: add v0.9.2 ( #42374 )
2024-02-19 03:02:43 -07:00
Alec Scott
575a33846f
bfs: add v3.1.1 ( #42740 )
2024-02-19 10:54:00 +01:00
Adam J. Stewart
79df065730
py-shapely: add v2.0.3 ( #42738 )
2024-02-18 21:29:18 +01:00
William Moses
953ee2d0ca
Bump enzyme to 0.0.100 ( #42626 )
2024-02-18 08:48:21 -08:00
Nai-Yuan Chiang
6796b581ed
hiop new release, v1.0.3 ( #42730 )
2024-02-18 08:45:44 -08:00
Christoph Junghans
f49a5519b7
byfl: initial commit ( #42731 )
2024-02-18 08:43:56 -08:00
Tom Drever
e07a6f51dc
Add py-click-option-group ( #42678 )
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* Add py-click-option-group
* Specify dependency versions
2024-02-18 08:22:25 -06:00
Dani
cb73d71cf1
new builtin package: py-biobb-model ( #42681 )
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* new builtin package: py-biobb-model
* Update var/spack/repos/builtin/packages/py-biobb-model/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-18 03:18:03 -06:00
Jonas Eschle
5949fc2c88
add package py-jacobi ( #42672 )
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* add package py-jacobi
* fix: add description
* fix: add description
* fix: add description
* [@spackbot] updating style on behalf of jonas-eschle
* Update package.py
* Update package.py
* Update var/spack/repos/builtin/packages/py-jacobi/package.py
I don't think that numpy is used in "build"? But not important
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: jonas-eschle <jonas-eschle@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-18 03:17:35 -06:00
