Commit graph

33162 commits

Author SHA1 Message Date
eugeneswalker
91178d40f3
e4s arm: disable bricks due to target=aarch64 not being respected (#40308) 2023-10-04 09:51:14 +02:00
kwryankrattiger
2817cd2936
ADIOS2: v2.8 is not compatible with HDF5 v1.14: (#40258) 2023-10-03 16:45:24 -05:00
Scott Wittenburg
92a6ddcbc3
ci: Change how job names appear in gitlab (#39963) 2023-10-03 15:16:41 -06:00
Sinan
58017f484c
fix_qgis_build_with_pysip5 (#39941)
* fix_qgis_build_with_pysip5

* build fails with newer protobuf

* somehow findgdal can figure this out.

* Update var/spack/repos/builtin/packages/qgis/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix gdal lib again

* qgis needs QtPositioning provided by qt+location option

* fix FindPyQt5 cmake file

* fix bug

* fix qsci sip issue

* fix bug

* blackify

* improve

* add latest LTR

* add build dep

* revert until bug is fixed

* specify proj version for qgis 3.28

* improve gdal libs search via indicating gdal-config

* make flake happy

* improve deps

* add 3.28.11, improve style

* fix style

* [@spackbot] updating style on behalf of Sinan81

---------

Co-authored-by: Sinan81 <Sinan@world>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-10-03 14:21:51 -05:00
George Young
86d2e1af97
falco: new package @1.2.1 (#40289)
* falco: new package @1.2.1
* specifying gmake
* Replacing homepage - readthedocs is empty

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-03 11:26:49 -07:00
Adam J. Stewart
bf23be291b
py-tables: add v3.8.0 (#40295) 2023-10-03 11:12:55 -07:00
Lydéric Debusschère
3b32a9918c
[add] py-graphene: new recipe, required by py-cylc-flow (#39988) 2023-10-03 11:21:36 -06:00
Jordan Galby
f0260c84b4
Fix binutils regression on +gas~ld fix (#40292) 2023-10-03 17:28:55 +02:00
eugeneswalker
8746c75db0
e4s ci stacks: sync with e4s-23.08 (#40263)
* e4s amd64 gcc ci stack: sync with e4s-23.08

* e4s amd64 oneapi ci stack: sync with e4s-23.08

* e4s ppc64 gcc ci stack: sync with e4s-23.08

* add new ci stack: e4s amd64 gcc w/ external rocm

* add new ci stack: e4s arm gcc ci

* updates

* py-scipy: -fvisibility issue is resolved in 2023.1.0: #39464

* paraview oneapi fails

* comment out pkgs that fail to build on power

* fix arm stack name

* fix cabana +cuda specification

* comment out failing spces

* visit fails build on arm

* comment out slepc arm builds due to make issue

* comment out failing dealii arm builds
2023-10-03 08:12:51 -07:00
Gavin John
e8f230199f
py-biom-format: Fix package file issues and bring up to date (#39962)
* Fix python versioning issue for py-biom-format

* Update deps according to feedback

* Remove version requirement for py-cython

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Only depend on py-six for versions >=2.1.10

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add py-future as non-dependency for 2.1.15

* There we are. Everything anyone could ever want

* Missed cython version change

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-03 09:55:15 -05:00
GeorgeJuniorGG
1e3c7abc1c
Adding dynaconf module (#39762)
* Adding dynaconf module

* Fixing style

* Adding dependency
2023-10-03 06:23:29 -05:00
Manuela Kuhn
12e51da102
py-yarl: add 1.9.2 (#40277) 2023-10-03 06:22:20 -05:00
Tom Payerle
992291c738
py-dipy: Update version to support python@3.10 (#40229)
* py-dipy: Update version to support python@3.10

py-dipy only adds support to python@3.10 in py-dipy@1.5.0

See #40228

* py-dipy: fix formatting issues

* py-dipy: another formatting fix

* py-dipy: Use depends instead of conflicts

* py-dipy: formatting fix

* py-dipy: Updating for @1.7.0

Added new minimum version requirements for
py-cython
py-numpy
py-scipy
py-h5py
as suggested by @manuelakuhn
(py-nibabel min version unchanged for @1.7.0)
2023-10-03 06:10:14 -05:00
Manuela Kuhn
78e63fa257
py-wcwidth: add 0.2.7 (#40256) 2023-10-03 06:04:30 -05:00
Manuela Kuhn
487ea8b263
py-virtualenv: add 20.24.5 (#40255)
* py-virtualenv: add 20.22.0

* py-platformdirs: add 3.5.3

* py-filelock: add 3.12.4

* py-distlib: add 0.3.7
2023-10-03 06:03:35 -05:00
Manuela Kuhn
0d877b4184
py-websocket-client: add 1.6.3 (#40274) 2023-10-03 05:58:53 -05:00
Manuela Kuhn
994544f208
py-werkzeug: add 2.3.7 and 3.0.0 (#40275) 2023-10-03 05:57:27 -05:00
Manuela Kuhn
36bb2a5d09
py-wrapt: add 1.15.0 (#40276) 2023-10-03 05:55:28 -05:00
Stephen Hudson
071c1c38dc
py-libEnsemble: add v1.0.0 (#40203)
* py-libEnsemble: add v1.0.0

* Add version ranges for deps

* Add comments to variants

* Put when before type

* Fix line lengths

* Re-format

* Update var/spack/repos/builtin/packages/py-libensemble/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/py-libensemble/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-10-03 05:48:17 -05:00
Lydéric Debusschère
b480ae2b7d
[add] py-graphql-relay: new package (#39807)
* [add] py-graphql-relay: new package

* py-graphql-relay: Update package.py

Remove leftovers from version 3.2.0:
* archive name in pypi
* dependencies

* [fix] py-graphql-relay: remove constraint on python version; add dependence py-rx because of ModuleNotFoundError during spack test

* [fix] py-graphql-relay: remove py-rx dependence; py-graphql-core: add dependencies for version 2.3.2

* py-graphql-core: Update from review; set build backend, py-poetry for version 3: and py-setuptools for version 2

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-03 05:45:06 -05:00
Lydéric Debusschère
7a390f503d
[add] py-metomi-isodatetime: new recipe, required by py-cylc-flow (#39990)
* [add] py-metomi-isodatetime: new recipe, required by py-cylc-flow

* py-metomi-isodatetime: use sources from pypi instead of github
2023-10-03 05:42:46 -05:00
dependabot[bot]
b7cb3462d4
build(deps): bump actions/setup-python from 4.7.0 to 4.7.1 (#40287)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.0 to 4.7.1.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](61a6322f88...65d7f2d534)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-03 12:28:02 +02:00
dependabot[bot]
f2230100ac
build(deps): bump urllib3 from 2.0.5 to 2.0.6 in /lib/spack/docs (#40286)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.5 to 2.0.6.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/v2.0.5...2.0.6)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-03 12:27:36 +02:00
Massimiliano Culpo
4b06862a7f
Deactivate Cray sles, due to unavailable runner (#40291)
This reverts commit 0274091204.
2023-10-03 11:06:36 +02:00
Harmen Stoppels
06057d6dba
Buildcache tarballs with rootfs structure (#39341)
Two changes in this PR:

1. Register absolute paths in tarballs, which makes it easier
   to use them as container image layers, or rootfs in general, outside
   of Spack. Spack supports this already on develop.
2. Assemble the tarfile entries "by hand", which has a few advantages:
   1. Avoid reading `/etc/passwd`, `/etc/groups`, `/etc/nsswitch.conf`
      which `tar.add(dir)` does _for each file it adds_
   2. Reduce the number of stat calls per file added by a factor two,
      compared to `tar.add`, which should help with slow, shared filesystems
      where these calls are expensive
   4. Create normalized `TarInfo` entries from the start, instead of letting
      Python create them and patching them after the fact
   5. Don't recurse into subdirs before processing files, to avoid
      keeping nested directories opened. (this changes the tar entry
      order slightly, it's like sorting by `(not is_dir, name)`.
2023-10-03 09:56:18 +02:00
Sam Reeve
bb03a1768b
Add AdditiveFOAM package (#39295)
* Add AdditiveFOAM package
* Add AdditiveFOAM build and install

Co-authored-by: kjrstory <kjrstory@gmail.com>
Co-authored-by: Knapp, Gerry <knappgl@ornl.gov>

---------

Co-authored-by: kjrstory <kjrstory@gmail.com>
Co-authored-by: Knapp, Gerry <knappgl@ornl.gov>
2023-10-02 16:27:13 -07:00
Adam J. Stewart
75ed26258c
py-torchgeo: add v0.5.0 (#40267)
* py-torchgeo: add v0.5.0

* Better documentation of dependency quirks
2023-10-02 15:23:49 -05:00
eugeneswalker
1da8477a3c
vtk-m@2.0: depend on kokkos@3.7:3.9 per issue #40268 (#40281) 2023-10-02 12:26:55 -07:00
Christoph Weber
4c111554ae
Add ipm package (#40069) 2023-10-02 11:46:17 -07:00
renjithravindrankannath
615312fcee
Rocm 5.6.0 & 5.6.1 release updates (#39673)
* 5.6.0 updates
* Rocm 5.6.0 updates
* Style and audit corrections for 5.6
* Patching smi path for tests.
* Style correction
* 5.6.1 updates
* Updated hip tests for ci build  failure
   Updated hiprand with the release tag
   Taken care the review comment rocsolver
* Adding rocm-smi path for 5.6
* Adding the patch file
* Setting library directory uniform
* gl depends on mesa but it should not be llvm variant
* Fix for the issue 39520 by setting CMAKE_INSTALL_LIBDIR=lib
* i1 muls can sometimes happen after SCEV. They resulted in
   ISel failures because we were missing the patterns for them.
* 5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx
* Revert "5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx"
   This reverts commit f54c9c6c67a4e5a54859f59d6550eb8e542d6c26.
* Revert operator mixup fix
* Splitting compiler-rt-linkage-for-host and operator mixup patch
* Adding missing patch for reverting operator mixup
* 5.6 update for composable-kernel,migraphx,miopen-hip and mivisionx
* Updating rvs, rcd and rccl for 5.6.1. adding comment for llvm patch
2023-10-02 11:36:51 -07:00
Joseph Wang
453625014d
fix lhapdf package (#37384)
* fix lhapdf package
* [@spackbot] updating style on behalf of joequant

---------

Co-authored-by: joequant <joequant@users.noreply.github.com>
2023-10-02 11:33:54 -07:00
G-Ragghianti
1b75651af6
Implemented +sycl for slate (#39927)
* Implemented +sycl for slate

* style

* style

* add slate +sycl to ci

* slate +sycl: explicitly specify +mpi

* comment out slate+sycl+mpi in e4s oneapi stack

* removing requirement of intel-oneapi-mpi

* Added slate+sycl to e4s oneapi stack

* Removing obsolete comment

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-10-02 07:35:00 -07:00
Thomas Madlener
b3e3604f46
libtirpc: Add latest version and allow for builds on macOS (#40189) 2023-10-02 15:02:33 +02:00
Harmen Stoppels
6c4ce379ca
buildcache: ignore errors of newer buildcache version (#40279)
Currently buildcaches are forward incompatible in an annoying way: spack
errors out when trying to use them.

With this change, you just get a warning.
2023-10-02 14:51:48 +02:00
Harmen Stoppels
a9dcba76ce
py-importlib-metadata: add patch releases (#40249)
importlib_metadata 4.11.4 fixes some nasty issues with
`metadata.entry_points(...)`, so ensure we have those bugfixes.
2023-10-02 10:09:36 +02:00
Harmen Stoppels
32f21f2a01
Spack python 3.12: PEP 695 unparse support (#40155) 2023-10-02 00:25:52 -07:00
Greg Sjaardema
e60bbd1bfc
Cgns fix no fortran config (#40241)
* SEACAS: Update package.py to handle new SEACAS project name

The base project name for the SEACAS project has changed from
"SEACASProj" to "SEACAS" as of @2022-10-14, so the package
needed to be updated to use the new project name when needed.

The refactor also changes several:
    "-DSome_CMAKE_Option:BOOL=ON"
to
   define("Some_CMAKE_Option", True)

* CGNS: If fortran not enabled, do not specify parallel fortran compiler

* Update package formatting as suggested by black

* Accept suggested change
2023-10-02 16:03:47 +09:00
Freifrau von Bleifrei
71c5b948d0
discotec package: add selalib variant (#40222) 2023-10-02 07:14:50 +02:00
Tom Payerle
726d6b9881
zoltan: Fixes for #40198 (#40199)
Fix issue in configure_args which resulted in duplicate "--with-ldflags" arguments (with different values) being passed to configure.  And extended the fix to similar arguments.

Also, repeated some flags to "--with-libs" to "--with-ldflags" as when the flags were only in "--with-libs", they did not seem to be picked up everywhere.  I suspect this is a bug in the configure script, but adding to both locations seems to solve it and should not have any adverse effects.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-10-02 07:11:36 +02:00
Sinan
aff64c02e8
xv: new package (#40032)
Co-authored-by: Sinan81 <Sinan@world>
2023-10-02 07:06:00 +02:00
Matthew Archer
31ae5cba91
add maintainers to py-nanobind (#40235) 2023-10-02 07:03:49 +02:00
Sam Reeve
0a91d2411a
cabana: add v0.6 (#40168) 2023-10-02 06:57:55 +02:00
snehring
5f3af3d5e4
perl-dbd-mysql update to 4.050 (#40245)
* perl-devel-checklib: adding new package perl-devel-checklib

* perl-dbd-mysql: adding new version 4.050 and a new build dep
2023-10-02 06:45:11 +02:00
Satish Balay
37158cb913
petsc,py-petsc4py,slepc,py-slepc4py: add version 3.20.0 (#40260) 2023-10-02 06:28:37 +02:00
Wouter Deconinck
a596e16a37
libxkbcommon: new versions 1.4.1, 1.5.0 (#40273) 2023-10-02 05:54:55 +02:00
Weiqun Zhang
4e69f5121f
amrex: add v23.10 (#40270) 2023-10-02 05:53:16 +02:00
Wouter Deconinck
2a0f4393c3
assimp: new version 5.3.1 (#40271) 2023-10-02 05:52:30 +02:00
Wouter Deconinck
c9e1e7d90c
acts: impose cxxstd variant on geant4 dependency (#39767) 2023-10-02 05:49:51 +02:00
Juan Miguel Carceller
7170f2252c
rivet: remove deprecated versions and clean up recipe (#39861)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2023-10-02 05:48:35 +02:00
eugeneswalker
b09073e01e
py-pandas@0.24.2 %oneapi: add cflag=-Wno-error=implicit-function-declaration (#39470) 2023-10-01 14:42:56 -06:00