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py-biom-format: Fix package file issues and bring up to date (#39962)

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* Fix python versioning issue for py-biom-format

* Update deps according to feedback

* Remove version requirement for py-cython

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Only depend on py-six for versions >=2.1.10

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add py-future as non-dependency for 2.1.15

* There we are. Everything anyone could ever want

* Missed cython version change

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
This commit is contained in:
Gavin John 2023-10-03 09:55:15 -05:00 committed by GitHub
parent 1e3c7abc1c
commit e8f230199f
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1 changed files with 19 additions and 9 deletions
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var/spack/repos/builtin/packages/py-biom-format/package.py
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@ -13,6 +13,10 @@ class PyBiomFormat(PythonPackage):
pypi = "biom-format/biom-format-2.1.6.tar.gz"
version("2.1.15", sha256="3bda2096e663dc1cb6f90f51b394da0838b9be5164a44370c134ce5b3b2a4dd3")
version("2.1.14", sha256="c8bac94ab6aa8226c0d38af7a3341d65e5f3664b9f45ec44fdf8b5275b2f92c1")
version("2.1.13", sha256="c48ed8fe978adaff5832f9d65ffcf8b735298bb2175b0360251d556baac5d4dc")
version("2.1.12", sha256="a4460e803b2abfcabe76d5d8fec0f3f7e76a8cd0e09bf22bb38dea9fca224ac2")
version("2.1.10", sha256="f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488")
version("2.1.9", sha256="18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491")
version("2.1.7", sha256="b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4")
@ -20,12 +24,18 @@ class PyBiomFormat(PythonPackage):
depends_on("python@2.7:", type=("build", "run"))
depends_on("python@3:", type=("build", "run"), when="@2.1.9:")
depends_on("py-setuptools", type=("build", "run"))
depends_on("py-cython@0.29:", type="build")
depends_on("py-h5py", type=("build", "run"))
depends_on("py-click", type=("build", "run"), when="@2.1.5:")
depends_on("py-numpy@1.9.2:", type=("build", "run"))
depends_on("py-future@0.16.0:", type=("build", "run"))
depends_on("py-scipy@1.3.1:", type=("build", "run"))
depends_on("py-pandas@0.20.0:", type=("build", "run"))
depends_on("py-six@1.10.0:", type=("build", "run"))
depends_on("py-setuptools", type="build")
depends_on("py-cython", type="build")
depends_on("py-h5py@2.2.0:", type=("build", "run"))
depends_on("py-click", type=("build", "run"))
depends_on("py-numpy@1.3.0:", type=("build", "run"))
depends_on("py-numpy@1.9.2:", type=("build", "run"), when="@2.1.7:")
depends_on("py-future@0.16.0:", type=("build", "run"), when="@:2.1.10")
depends_on("py-scipy@0.13.0:", type=("build", "run"))
depends_on("py-scipy@1.3.1:", type=("build", "run"), when="@2.1.8:")
depends_on("py-pandas@0.19.2:", type=("build", "run"))
depends_on("py-pandas@0.20.0:", type=("build", "run"), when="@2.1.7:")
depends_on("py-six@1.10.0:", type=("build", "run"), when="@:2.1.10")
# https://github.com/biocore/biom-format/pull/865
conflicts("^python@3.10:", when="@:2.1.10")