Commit graph

8034 commits

Author SHA1 Message Date
Adam J. Stewart
7fe0230492
Add py-kmodes package (#11497) 2019-05-19 14:17:30 -05:00
Adam J. Stewart
5b6445e519
Add latest version of joblib (#11495) 2019-05-19 14:17:03 -05:00
Adam J. Stewart
ac358a1b4d
Add latest version of setuptools (#11493) 2019-05-19 14:16:37 -05:00
David Beckingsale
866b9b5d13 Update Umpire package with new versions (#11441)
* Update Umpire package with new versions

* Fix version ordering
2019-05-18 23:04:12 -05:00
Denis Davydov
a66cc59bb0 trilinos: add variant to disable chaco from seacas (#11482)
* trilinos: add variant to disable chaco from seacas

keep it OFF by default due to the presence of the global symbol "divide"
that can lead to symbol clash with other libraries, for example see
https://github.com/dealii/dealii/issues/8170#issuecomment-492700787

* dealii: add conflict statement for adol-c and Trilinos SEACAS Chaco
2019-05-18 23:01:44 -05:00
Mark W. Krentel
e1bb6821aa dyninst: rework the cmake args for version 10.1 and later (#11484)
* dyninst: rework the cmake args for version 10.1 and later

Add a separate when() case for the cmake args for Dyninst 10.1.0 and
later.  The prereq args have changed enough that this makes things
easier going forward.  (My previous commit 26b9369c was inaccurate and
temporary.)

Dyninst 10.1.0 accepts boost 1.70, but earlier dyninst are restricted
to <= 1.69 (not worth back porting every boost change).

Change all the dyninst versions to 3 digits for clarity and
consistency.

* Add version 10.1.0.
2019-05-18 23:00:48 -05:00
Nichols A. Romero
6ba6c84de5 QMCPACK Update May 2019 (#11492)
* Add QMCPACK 3.7.0

* SOA is now the default.

* Add QMCPACK converter based on QE 6.4
2019-05-18 22:57:52 -05:00
Jean-Paul Pelteret
517212b8a3 Add conflicts in deal.II package between SymEngine and Trilinos variants (#11499) 2019-05-18 22:56:56 -05:00
Owen Solberg
92604ed576 intel-tbb: fix patch for old compilers (#11371)
* added patch for intel-tbb@2019.1: with old compilers

* sparately specify when @:2018 and @2019

the reason we can't say @:2019 is that would include @2019.1 where the
patch doesn't work.

* should be possible to list when constraint as @:2019

According to my reading of ["Version ranges" in the Spack
docs](https://spack.readthedocs.io/en/latest/packaging_guide.html#version-ranges),
this should apply to up to `2019` but not `2019.1:`

* @:2019.0 appears to be necessary to specify 2019 but not 2019.1

* specifying 2019.1 2019.2 2019.3 2019.4 separately and explcitly

* flake8 fixes for long lines.

* add comments to explain why so many different patch directives

* remove blank like for flake8

* revert spec %gcc@4.8.0:4.99999 -> %gcc@4.8.0:
2019-05-18 21:00:32 -05:00
Justin S
c595883195 r-popvar: new package at 1.2.1 (#11490) 2019-05-17 14:45:21 -05:00
Justin S
cc6f822cb1 smof: new package at 2.13.1 (#11502) 2019-05-17 14:44:35 -05:00
Justin S
c7a28ec1d4 r-bglr: new package at 1.0.8 (#11489) 2019-05-17 14:35:38 -05:00
Justin S
719cd6741d r-rrblup: new package at 4.6 (#11488) 2019-05-17 14:34:33 -05:00
Justin S
8c5b41793c r-qtl: new package at 1.44-9 (#11487) 2019-05-17 14:33:42 -05:00
Justin S
c00ed0d942 py-metasv: new package at 0.5.4 (#11476) 2019-05-17 14:33:04 -05:00
Justin S
7a459857e7 py-pybedtools: new package at 0.6.9 (#11475)
* py-pybedtools: new package at 0.6.9

* py-pybedtools: add bedtools2 dep
2019-05-17 14:32:21 -05:00
Justin S
79a0da6098 repeatmodeler: new package at 1.0.11 (#11472) 2019-05-17 14:31:26 -05:00
Sriram Swaminarayan
0557d93080 added branch multisplice to the parsplice package (#11504) 2019-05-17 12:08:40 -06:00
Christoph Junghans
b7f2923607
gasnet: 2019.3.0 (#11503) 2019-05-17 12:02:43 -06:00
Christoph Junghans
2af7688c55
parsplice: needs LAMMPS_EXCEPTIONS (#11500) 2019-05-17 08:57:35 -06:00
Piotr Luszczek
900f8f0806 Add version 2.5.1-alpha1 of MAGMA (#11486) 2019-05-17 08:19:32 -05:00
Todd Gamblin
23c48d94d3
cmake: default to +ownlibs to improve build times (#11483)
- CMake is built *very* frequently, and the number of dependencies it has
  accumulated can take a very long time on some systems.

- Use +ownlibs by default to avoid the build overhead. This won't
  interfere with other packages by introducing conflicting libraries, as
  CMake is nearly always a build dependency.
2019-05-17 08:47:58 +02:00
Jim Galarowicz
c7f23dcd8d OpenSpeedShop/CBTF package updates and fixes (#11470)
This avoids using Boost 1.70.0, fixes library access in OpenSpeedShop
packages, adds new versions, and updates QT dependency constraints
in CBTF and OpenSpeedShop packages

- Constrain Boost dependency to 1.69.0 or earlier to avoid issues
  with 1.70.0 for Open|SpeedShop and CBTF packages
- Update DYNINSTAPI_RT_LIB environment variable to use single library
  from "find_libraries" (which returns a list) in OpenSpeedShop
  packages
  Fixes #11443
- Add version 1.9.3 for CBTF Argo Navis, CBTF Krell, CBTF LANL, and
  CBTF packages
- Add version 2.4.1 for OpenSpeedShop Utils and OpenSpeedShop
  packages
- Update QT dependency to 5.10.0 or greater for QtGraph and CBTF Argo
  Navis packages
2019-05-16 18:19:55 -07:00
Michael Kuhn
e90b4ce6fb CDO package: Fix build with gcc@9 (#11464)
This makes several changes to make CDO work with gcc@9:

- Add version 1.9.7rc2
- Add a patch to make version 1.9.7rc2 build with gcc@9:
- Add a conflict with GCC 9 for earlier versions of CDO

It also adds a pkgconfig build dependency as configure checks for it.
2019-05-16 17:53:38 -07:00
Andrew Gaspar
8675f44d45 Kokkos package: add debug variant (#11469) 2019-05-16 17:35:23 -07:00
Chris Green
f90507a227 numpy: new version 1.16.3; update historical versions. (#11364) 2019-05-16 11:44:43 -05:00
Chuck Atkins
c2d6095cf3
paraview: fix several dependency issues (#11432)
* Use externally provided mpi4py
* Make mpi4py and numpy both build deps instead of only run deps
* libxt is only on ~osmesa platform=linux
2019-05-16 09:04:44 -04:00
David Beckingsale
5ccc695bfb Fix CMake versions dependencies in RAJA package (#11440) 2019-05-16 13:54:52 +02:00
Thomas Gruber
0337170d34 Likwid: added versions 4.3.3 and 4.3.4 (#11479) 2019-05-16 13:35:25 +02:00
Denis Davydov
38a59e6e37 symengine: add 0.4.0, fix dependency in dealii (#11473) 2019-05-16 12:23:21 +02:00
ktsai7
f68f5e3014 Update flecsi package.py (#11442)
* Update flecsi package.py

* Update package.py

* Update package.py

* Update package.py
2019-05-15 15:29:08 -06:00
Justin S
bfb0f57492 r-geonames: new package at 0.999 (#11455) 2019-05-15 16:04:50 -05:00
Justin S
11bd795ca8 repeatscout: new package at 1.0.5 (#11409)
* repeatscout: new package at 1.0.5

* repeatscout: add trf runtime dependency

* repeatscout: add nseg runtime dependency
2019-05-15 16:04:17 -05:00
Justin S
19355cafae r-phylostratr: new package (#11053) 2019-05-15 16:03:36 -05:00
Justin S
5f5616d6a2 r-taxizedb: new package at 0.1.4 (#11052) 2019-05-15 16:02:54 -05:00
Justin S
b19429159f r-rmysql: add 0.10.17, mariadb-connector-c dependency (#11044)
* r-rmysql: add 0.10.17, mariadb-connector-c dependency

* r-rmysql: add dbi, mariadb version constraints
2019-05-15 15:58:15 -05:00
Justin S
62fa813678 recon: new package at 1.08 (#11408)
* recon: new package at 1.08

* recon: add period

* recon: use proper decorators, better documentation

* recon: fix incorrect os import

* recon: add repeatmasker patch as variant
2019-05-15 15:55:10 -05:00
Justin S
80d7573df8 r-rnoaa: new package at 0.8.4 (#11461) 2019-05-15 15:52:17 -05:00
Justin S
a99454ec6d r-isdparser: new package at 0.3.0 (#11460) 2019-05-15 15:51:50 -05:00
Justin S
cdd8da7251 r-crul: new package at 0.7.4 (#11459) 2019-05-15 15:51:11 -05:00
Justin S
cfad3cd06c r-httpcode: new package at 0.2.0 (#11454) 2019-05-15 15:50:32 -05:00
Justin S
f3dd933e3f r-urltools: new package at 1.7.3 (#11458) 2019-05-15 15:48:54 -05:00
Justin S
c49017a4c5 r-triebeard: new package at 0.3.0 (#11457) 2019-05-15 15:48:17 -05:00
Justin S
230db7c880 r-curl: add 3.3 (#11456) 2019-05-15 15:47:45 -05:00
Denis Davydov
9d34326992 fix suite-sparse built with tbb from intel-parallel-studio (#11134)
* fix suite-sparse built with tbb from intel-parallel-studio

* intel: add tbb_headers, strip newline from cxx_lib

* use property
2019-05-15 11:03:19 -07:00
Justin S
5c021f5416 New package: NSEG (starting at version 1.0) (#11410)
The source is managed as a set of files in an FTP URL. Since there
are no FetchStrategy's implemented for this setup, the files are
managed as a set of Resource's
2019-05-15 10:35:38 -07:00
Leonhard Reichenbach
eae9b0908a CMake package: add dependencies (#11257)
Add dependencies to CMake and GnuTLS which would otherwise be
picked up from the system

* Add gnutls as explicit dependency of CMake
* Add new package libidn2 as explicit dependency for gnutls
2019-05-15 10:07:31 -07:00
Christoph Junghans
0226a95232
parsplice: fix build (#11462) 2019-05-15 08:18:35 -06:00
Brian Van Essen
821b7d3b93 Added setuptools to receipe (#11463) 2019-05-15 12:19:04 +02:00
Michael Kuhn
58c5442d62 kitty: Fix pkgconfig dependency (#11465)
pkgconfig is the correct virtual dependency while pkg-config is a
specific implementation.
2019-05-15 12:18:16 +02:00