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Author SHA1 Message Date
lingnanyuan
414287a52e r-rgeos: Create new package. (#6592) 2018-01-04 09:01:17 -06:00
Denis Davydov
cef711458e qt: add 5.10.0, fix macOS build, clean-up comments/TODOs (#6766) 
* qt: add 5.10.0, fix macOS build, clean-up comments/TODOs

* qt: fix pkgconfig files

* qt: restore-pc-files.patch

* add version constraint to the patch

* qt: adjust url_for_version for 5.10.0
 2018-01-04 09:00:01 -06:00
Milton Woods
70d589a14e xios: I/O management for climate models (#6796) 
* xios: XML-IO-SERVER library for IO management of climate models

* xios: install to prefix directory

* xios: add a test case

* xios: define versions to use cache and mirror directories

* xios: use proper svn URL for version 910

* xios: package url must be defined, otherwise uninstall fails

* xios: add trunk version to allow building latest revision

* xios: enable parallel build

* xios: allow installation with mpif90 compiler wrappers

* xios: use mpi variants of dependencies

* xios: allow user to specify MPI launcher via MPIRUN environment variable

* xios: prefer spack versions of blitz and boost (needed for gcc@7)

* xios: enable builds with clang+gfortran on OSX

* xios: use numeric versions for releases, @develop for trunk

* xios: different patches required for @1.0 and @develop

* xios: patch function for clang works across revisions

* xios: link blitz library

* xios: workaround bug 17782 in llvm

* xios: whitespace adjustments for flake8

* xios: avoid bare except clause

* xios: netcdf-fortran inherits ^netcdf+mpi from xios dependencies
 2018-01-04 08:58:24 -06:00
Eric
75f1a91821 py-umi-tools: Create new package (#6823) 
* py-umi-tools: Create new package

* py-umi-tools: fix dependencies
 2018-01-04 08:55:37 -06:00
Loikki
229db0f1c7 Update grackle (#6822) 2018-01-03 21:35:17 +01:00
Mark Olesen
f07ce6094e package openfoam-com: add version 1712 and update patches (#6820) 
* combine all patches for 1612 into a single file, with additional
  comments to explain the rational.

* Add kahip decomposition variant.

* Add support for ARM64 architecture.

* filter instead of patching etc/config.*/settings. This eliminates
  patch files for 1706, perhaps for the future as well.

* URLs at or before version 1612 have a different structure, so
  provide a url_for_version implementation to handle this
 2018-01-03 11:30:10 -08:00
Sinan
2f551908b8 package/r-rjags: create new package (#6804) 
* package/r-rjags: create new package

* fix typo

fix typo

* package/r-rjags small fix to pass flake8 tests

* package/r-rjags: more fixes to satisfy flake8 tests
 2018-01-03 10:17:15 -06:00
健美猫
34c9f08c2c fltk depends on libx11. (#6816) 2018-01-03 10:14:51 -06:00
健美猫
ce317674bf Add a new version and runtime dependency for MotionCor2. (#6817) 
* Update motioncor2 to 1.0.4 and add libtiff dependency.

* Add comments for libtiff dependency in MotionCor2.
 2018-01-03 10:03:35 -06:00
健美猫
ec2c0b3e65 Add libtiff@3. (#6818) 2018-01-03 10:02:45 -06:00
Denis Davydov
e623bbb679 suite-sparse: support 64bit BLAS (#6767) 
* suite-sparse: support 64bit BLAS

* use double quotes instead of escaped quotes
 2018-01-03 09:58:19 -06:00
stefanosoffia
2ed914aa1b Flex v2.6.4 conflicts with gcc@7.2.0 (#6819) 2018-01-03 09:46:57 -06:00
Douglas Duckworth
d466d8f3d3 singularity - added master branch (#6631) 
* singularity - added master branch as this has latest fixes - 2.4 does not compile on centos 6 without use of this branch

* renamed to develop

* added master branch properly
 2018-01-02 21:47:21 -06:00
Axel Huebl
5d2f752c1b New Package: py-adios (#5686) 
The ADIOS1 numpy bindings depend on an installed, fully loaded
ADIOS C library + its config tools to build properly.
 2018-01-02 21:37:59 -06:00
Brian Van Essen
3c63710532 Intel mkl dnn (#6268) 
* Added a package for the MDAnalysis toolkit.

* Added a package for the Intel MKL-DNN project.

* Fixed flake8 errors.

* Fixed Flake8
 2018-01-02 21:27:34 -06:00
Eric
d2c3b3884b rsem: update version 1.3.0 md5sum (#6650) 2018-01-02 21:15:40 -06:00
Michael Kuron
2c5c7a37cb atom-dft: new package plus dependencies (#6653) 
* atom-dft: new package plus dependencies

* Indentation fix

* Use the compiler wrappers

* Pass variables instead of using FileFilter
 2018-01-02 20:32:37 -06:00
Jimmy Tang
ea6b6ef1ff Install all the cli tools from all the sub-directories (#6705) 
* Install all the cli tools from all the sub-directories

* Satisfy pep8
 2018-01-02 20:14:39 -06:00
Feiyi Wang
8ed1c84539 py-lrudict: a LRU-based cache dictionary (#6734) 
* add py-lrudict

* style fix

* style fix: add blank lines
 2018-01-02 20:10:49 -06:00
Feiyi Wang
8221265c3c py-scandir: a better directory iterator, backport to 2.7 (#6739) 2018-01-02 20:08:58 -06:00
Levi Baber
59cd2db8f3 gatk: boilerplate cleanup (#6744) 2018-01-02 20:05:04 -06:00
Denis Davydov
4b5fe75bc3 add OctavePackage (#6746) 
* add OctavePackage

1. remove import CudaPackage which is not needed anymore
2. mention CudaPackage and OctavePackage in packaging guide
3. adjust OctavePackageTemplate
4. add clue file for Octave build
5. sanity check on self.prefix

* use setup_environment
 2018-01-02 20:03:27 -06:00
Feiyi Wang
fd6b9ac3af py-xattr: a python interface to access extended file attribute (#6747) 
* py-xattr: a python interface to access extended file attribute

* py-xattr: style fix
 2018-01-02 20:02:03 -06:00
Brian Van Essen
a92268d62a Lbann update (#6751) 
* Added a package for the MDAnalysis toolkit.

* Updated the LBANN recipe to use the revised cmake environment being
rolled out.

* Flake8 errors
 2018-01-02 20:01:23 -06:00
Denis Davydov
3d257e8280 likwid: add stable 4.3.0 (#6761) 2018-01-02 19:59:14 -06:00
Denis Davydov
cc74da5aab mesa: disable binutils on macOS (#6763) 2018-01-02 19:58:38 -06:00
Levi Baber
353870fe50 jags: lapack fix (#6764) 
* jags: fixing openblas thows a lapack error when compiling. atlas works. other lapack providers may work. also adding tags

* changing blas/lapack reference

* removing openblas conflict

* jags: whitespace cleanup for flake8
 2018-01-02 19:57:54 -06:00
Milton Woods
6922ea5889 Esmf fixes for Cray, OSX and mpich (#6768) 
* esmf: put .mod files in the spack compiler search path

* esmf: allow building with Cray mpi

* esmf: create run-path dependent libraries on osx

* esmf: link fortran interface libraries when building with mpich
 2018-01-02 19:43:55 -06:00
Jon Rood
e1e24ff80e Adding option to build Nalu with Hypre support. (#6782) 2018-01-02 19:42:47 -06:00
peetsv
fef93d2221 perl-xml-libxml: adding perl module (#6783) 
* perl-xml-libxml: adding perl module

* line length change
 2018-01-02 19:42:09 -06:00
Sinan
7f319b9f84 create perl-file-which package (#6800) 
* create perl-file-which package

* trivial edits for package.py so

trivial edits for package.py so that flake8 will not complain
 2018-01-02 19:36:59 -06:00
stefanosoffia
2aaba189ed Updated 'nginx' from v1.12.0 to v1.13.8. (#6810) 
This fixes build issues with most recent gcc versions.
See issue #6252.
 2018-01-02 19:29:47 -06:00
Eric
958abe5b29 py-pyani: Create new package (#6811) 2018-01-02 19:27:42 -06:00
Eric
7db7b5b596 MinCED: Create new package (#6815) 2018-01-02 19:25:08 -06:00
Levi Baber
08ea9808c6 adding specific version url for augustus 3.3 due to old folder structure (#6813) 2018-01-02 19:24:28 -06:00
Jon Rood
285538a78d Tioga package: Explicitly list MPI compilers for Cmake (#6741) 2018-01-02 13:14:22 -08:00
Jon Rood
2812644ed7 paraview package: Explicitly specify MPI compilers in Cmake (#6738) 2018-01-02 13:06:25 -08:00
Milton Woods
5dd5dc01c2 new package: Pfunit: unit testing framework for Fortran (#6795) 2018-01-02 12:18:08 -08:00
Eric
e483f9297a new package: DIAMOND (#6793) 2018-01-02 12:03:45 -08:00
Eric
8271f0e271 new package: tantan (#6792) 2018-01-02 12:00:13 -08:00
Adam J. Stewart
b10098dc53 Cython only needed for develop version of mpi4py (#6780) 2018-01-02 11:34:24 -08:00
Eric
9ac9017589 new package: py-rseqc (#6773) 2018-01-02 11:10:55 -08:00
Eric
e8b1e79fbf package py-biopython: remove py-mx dependency (#6772) 2018-01-02 10:59:21 -08:00
Eric
caa39d08d4 package r-rcurl: boilerplate cleanup (#6771) 2018-01-02 10:58:03 -08:00
Eric
c3b003e698 bamtools: Add version 2.5.1 (#6770) 2018-01-02 10:55:07 -08:00
Axel Huebl
da93c9b870 Add: lines-are-beautiful (#6784) 
Adds the C++ File API library "lines-are-beautiful" for the
reMarkable e-ink tablet.
 2017-12-30 12:29:27 -08:00
Nichols A. Romero
24743b7e5a QMCPACK package: update blas/lapack detection (#6753) 
* Fix detection of blas and lapack: provide libraries/includes as
  arguments to CMake rather than using CMake's auto-detection.
  This includes a patch to QMCPACK's CMake files to refer to
  Spack-built blas/lapack implementations. This also includes
  special-case logic for the intel-mkl implementation of blas/lapack

* Break up unit tests and short tests. Only hard failure if the unit
  tests fail, if short tests fail issue a warning only.

* Add QMCPACK 3.3.0, get rid of 3.0.0
 2017-12-22 16:47:49 -08:00
Denis Davydov
f764ac4573 dealii: support 64bit BLAS (#6758) 2017-12-22 15:55:04 +01:00
Andrey Prokopenko
937f68c359 clang,flang: update CC, CXX environment in installation module (#6737) 2017-12-22 07:32:10 +01:00
peetsv
d1786779c4 gmap-gsnap: adding version 2014_12_28 (#6720) 2017-12-22 06:56:58 +01:00
Levi Baber
f2e061debf Feature/fasttree (#6227) 
* fasttree: new package

* fasttree: better version handling

* fixing line length for flake8
 2017-12-20 19:10:24 -08:00
Mark Olesen
ef2e51571d ENH: better handling of mpich for openfoam packages 
- define MPICH_SKIP_MPICXX, link libmpich instead of libmpi
  (as per disussion in PR #4990)

ENH: more flexible editing/patching of openfoam env files

CONFIG: comment out requirement for openmpi+thread_multiple

- was originally slated for the 1712 release and beyond, but there are
  reportedly unstable version/network combinations.
  Leave as comment for future reference, since it may be arise again.

STYLE: renamed openfoam-site.patch as 1706-site.patch (and reformatted)

- to preserve against impending changes in the layout of
  config.{csh,sh}/settings
 2017-12-20 11:32:33 -08:00
Mark Olesen
235c3c1025 ENH: improved openfoam module creation (issue #4942) 
- post-install module settings for openfoam-com and foam-extend.
 2017-12-20 11:32:33 -08:00
Eric
6ea4614dbd picard: Add version 2.17.0 (#6729) 2017-12-20 13:28:37 +01:00
Denis Davydov
ea5f8c7382 octave: add optim and struct packages (#6733) 2017-12-20 13:27:50 +01:00
Gregory Lee
241ea77229 sqlite package: apply B0 patch to additional versions (#6728) 2017-12-19 11:06:39 -08:00
Denis Davydov
0ef741d291 slepc: add 3.8.2 (#6724) 2017-12-19 15:40:30 +01:00
Denis Davydov
e462d39afe intel-tbb: add 2018.2 (#6725) 2017-12-19 15:39:42 +01:00
Denis Davydov
98f220b304 hypre: add 2.13.0 (#6726) 2017-12-19 15:39:27 +01:00
Denis Davydov
599094abbd suite-sparse: add 5.1.0 (#6727) 2017-12-19 15:39:12 +01:00
Jack Morrison
720ad57bcd Added GDB verison 8.0 (#6704) 2017-12-19 09:54:18 +01:00
peetsv
d0a10edb67 nextflow: adding version 0.21.0 (#6722) 2017-12-19 09:07:33 +01:00
Peter Doak
d4c84be91b Emacs: added gnutls variant (tested on Centos 7) (#6711) 2017-12-19 08:36:54 +01:00
Denis Davydov
69f959ec0b gmsh: add 3.0.6 (#6718) 2017-12-19 08:31:23 +01:00
junkudo
d69d692203 CoinHSL : Prevent CoinHSL from building in parallel (#6715) 
CoinHSL does not seem to be able to be built in parallel. This commit forces serial compilation.
 2017-12-19 08:30:39 +01:00
Denis Davydov
548c225d45 dealii: add GMSH, add CMAKE_FIND_APPBUNDLE to CMakePackage (#6723) 
* dealii: add GMSH dependency

* CMakePackage: add CMAKE_FIND_APPBUNDLE to prevent picking up binaries from /Applications
 2017-12-19 08:28:55 +01:00
peetsv
e8de22ce46 lftp: adding version 4.6.4 (#6721) 2017-12-19 08:19:33 +01:00
Mark Olesen
b3e9192d18 openfoam-org: new version (#6686) 
Add new version with a patch.
 2017-12-18 19:47:49 -08:00
peetsv
f7a5a27138 IGV: new package (#6710) 2017-12-18 19:37:09 -08:00
Benedikt Riedel
36fa574779 globus-toolkit: add version and openssl dependency (#6617) 2017-12-18 15:23:56 -08:00
Douglas Duckworth
d3519af7de relion - added new stable version 2.1 (#6706) 2017-12-18 10:38:20 -08:00
healther
0cff0fba73 fix post install method for py3 in mercurial (#6497) 
* fix post install method for py3 in mercurial

* Update package.py

* Update package.py

* use print_str instead of manual print detection

* Update package.py

* use only depends_on

* Update package.py

* Update package.py

State py3 compatibility for @4.3: according to setup.py from the 4.3.tar.gz from pypi
 2017-12-17 12:00:58 -06:00
Sergey Kosukhin
576ef5e2b3 Package 'cdo': get rid of unnecessary dependency on MPI C++ library. (#6632) 2017-12-16 19:48:56 -07:00
nshtg
2a639097b0 Add new package signify (#6645) 
OpenBSD tool to sign and verify signatures on files.

See https://github.com/aperezdc/signify
 2017-12-16 19:47:59 -07:00
Eric
7d800a0fc2 breseq: Create new package (#6648) 2017-12-16 19:47:11 -07:00
fpruvost
6c81cf1a78 build lapacke with tmg (#6654) 2017-12-16 19:43:46 -07:00
David Orman
7b8d889d31 bwa: added version 0.7.16a and checksum (#6658) 2017-12-16 19:43:02 -07:00
Jack Morrison
d4cc1ac86b Hadoop: Replace broken url (#6671) 2017-12-16 19:42:03 -07:00
David Böhme
3467c207c8 Caliper update, add version 1.6.0 (#6680) 2017-12-16 19:39:52 -07:00
Eric
dac09dd5fb py-bx-python: Create new package (#6672) 2017-12-16 19:38:59 -07:00
Eric
d08dc0c019 py-tetoolkit: Create new package (#6673) 2017-12-16 19:38:36 -07:00
Eric
d3545ed1b3 py-pandas: add versions 0.19.2 and 0.21.1 (#6687) 2017-12-16 19:38:02 -07:00
Paschalis Korosoglou
a69cfd5f78 Add petsc version 3.8.3 (#6688) 2017-12-16 19:37:35 -07:00
Paschalis Korosoglou
61dbd3182d Add clanguage variant for petsc (#6689) 2017-12-16 19:37:20 -07:00
Eric
87420dccee bedtools2: Add version 2.27.1 (#6693) 2017-12-16 19:36:35 -07:00
peetsv
5d0e7abcc5 MetaSV: adding new package (#6691) 2017-12-16 19:36:11 -07:00
Eric
5539c94e67 PANDAseq: Create new package (#6694) 2017-12-16 19:35:48 -07:00
Eric
554d4045fa DeNovoGear: Create new package (#6699) 2017-12-16 19:34:53 -07:00
lingnanyuan
34cf796b54 mefit: Create new package. (#6700) 2017-12-16 19:34:30 -07:00
Denis Davydov
f78418d8bb moltemplate: add new package (#6702) 2017-12-16 19:33:28 -07:00
David Orman
176b518d4b new package: gatk (#6674) 2017-12-15 11:00:55 -08:00
Jon Rood
7369ba21bf new package: Percept (#6636) 
This also adds the 'exception' boost library to the set of default
libraries built by boost.
 2017-12-14 18:11:47 -08:00
Douglas Duckworth
1aed3f7c01 added breakdancer (#6319) 2017-12-14 14:43:32 -07:00
Massimiliano Culpo
6c1fa37e3d
fftw: added version 3.3.7 (#6678) 2017-12-14 21:38:33 +01:00
Jon Rood
b447c2ba51 Add TIOGA package and optional dependency of Nalu on TIOGA (#6638) 2017-12-14 11:46:25 -08:00
Scott Wittenburg
ce832fca59 libharu: Make dependencies on zlib and libpng explicit (#6682) 2017-12-14 08:58:42 +01:00
Douglas Duckworth
5a66065dfa relion: add version and cuda arch variant (#6317) 
Add preferred version 2.0.3. Added beta version. Added conflict with
gcc versions >= 5 when building with cuda@8 (which is currently the
only supported cuda version). Added cuda architecture variant. Added
comment about current lack of cuda@9 support.
 2017-12-13 10:30:38 -08:00
Denis Davydov
c0aa12111b tasmanian: add new package (#6659) 2017-12-13 16:01:51 +01:00
Axel Huebl
836bf65250 CUDA: 9.1 (#6663) 
Add the latest CUDA release, 9.1
 2017-12-13 14:43:40 +01:00
peetsv
2e4c9e47a8 py-pysam: adding old version 0.7.7 (#6675) 2017-12-13 09:01:45 +01:00
Eric
5fa9e61321 SPAdes: add version 3.11.1 (#6668) 2017-12-13 08:57:29 +01:00
David Orman
c5cb8ae159 picard: added version 2.13.2 (#6669) 2017-12-13 08:57:06 +01:00
Audrey Thoma
45784af7f2 new packages: biopieces and dependencies (#6478) 
This also adds the tcl, tk, and libx11 dependencies to ruby. All other
changes are new packages.
 2017-12-12 18:35:13 -08:00
Christoph Junghans
27be66420a
laghos: inject CXX (#6664) 2017-12-12 17:26:02 -07:00
Christoph Junghans
e80a27d713
swfft: inject CC/CXX (#6666) 2017-12-12 17:25:48 -07:00
Satish Balay
80284617a5 xsdk: update xsdk@develop to use sundials, plasma, magma (#6649) 
Also update xsdk@0.3.0 to use a fixed version of magma
 2017-12-12 09:31:08 -08:00
nshtg
e831ecbf3a Add new package minisign (#6644) 
A dead simple tool to sign files and verify signatures.

See https://jedisct1.github.io/minisign
 2017-12-11 17:27:40 -07:00
nshtg
45e8e4b4fb libsodium: Update to 1.0.15 (#6643) 2017-12-11 17:27:09 -07:00
nshtg
25aa21a7a7 git: Update to 2.15.1 (#6642) 2017-12-11 17:26:53 -07:00
nshtg
74938f58d2 openssl: Update to 1.0.2n (#6641) 
From 07.12.2017, fixes CVE-2017-3737
 2017-12-11 17:26:37 -07:00
Brian Van Essen
6fec473e9e Py h5py update (#6635) 2017-12-11 17:26:13 -07:00
健美猫
e19aa80734 intel-parallel-studio: restrict patch to versions > 2016 (#6523) 
Fixes #6522

Patch psxevars.sh and psxevars.csh only when year > 2016.
pxevars.csh does not exist for versions before 2017. psxevars.sh
does not appear to require this patch for versions before 2017.
 2017-12-11 13:14:24 -08:00
Johann Klähn
e83c3d1b6a bazel: include SPACK_DEBUG_LOG_ID in environment (#6562) 
Fixes #6521.

Bazel's build system filters environment variables, including those
set by Spack for use by its compiler wrapper. This updates the patch
to include the SPACK_DEBUG_LOG_ID variable added in #5837.
 2017-12-11 10:34:06 -08:00
Satish Balay
53b2ec356b disable plasma in xsdk 0.3.0 (#6621) 2017-12-10 17:51:54 -08:00
Adam J. Stewart
f41a263a28 Fix reference to self.versions in neovim package (#6639) 2017-12-10 21:43:49 +01:00
Cyrus Harrison
95a384f051 updates to conduit and ascent packages (new PR) (#6584) 
* optional path to use spacks py-site-pkgs, install host-cfg for provenance

* add more comments and address review requests

* only use st-pkgs-dir when +python

* ascent does not need doxygen

* capture mpiexec if it exists

* added missing import

* flake8 fix

* default adios variant to False

* ascent develop now reqs conduit master

* optional path to use spacks py-site-pkgs, install host-cfg for provenance

* add more comments and address review requests

* only use st-pkgs-dir when +python

* ascent does not need doxygen

* capture mpiexec if it exists

* added missing import

* flake8 fix

* default adios variant to False

* ascent develop now reqs conduit master

* conduit: use hdf5 1.8 for wider output compat
 2017-12-08 13:43:12 -08:00
Chris Green
e279299b9b Relax restriction on lua version. (#5886) 2017-12-08 20:52:00 +01:00
Thilina Rathnayake
c1bc1be2a7 Add NekCEM package to spack (#6509) 2017-12-08 10:30:42 -07:00
Thilina Rathnayake
d6db532095 Update the Nekbone package (#6508) 2017-12-08 10:29:58 -07:00
healther
4c02e7e9f4 add restriction to py-setuptools dependency on py-flake8 (#6589) 2017-12-08 10:22:52 -07:00
Eric
bb8e7ee023 Perl-statistics-descriptive: Create new package (#6588) 2017-12-08 10:22:16 -07:00
Axel Huebl
5bf19a9d84 Fix AstroPy: Missing Markupsafe (#6630) 
`py-markupsafe` was missing during `spack install` as a build error.
 2017-12-08 10:21:46 -07:00
Axel Huebl
353ea07040 Add: Py-Plotly (#6628) 
* Add: Py-Plotly

The requirements of py-plotlit are rather strict fixed to specific
versions, so I did not add an "upper versions" `:` to the constrains.
See
  https://github.com/plotly/plotly.py/blob/master/requirements.txt

* Py-Requests, Py-Six, Py-Pytz: Older Versions

Add two older versions of requests, pytz and six for plotly.
 2017-12-08 10:21:28 -07:00
Paschalis Korosoglou
5e8139cbd1 Fix in download url for package libaio (#6616) 2017-12-08 10:20:14 -07:00
nshtg
e283a79da6 Update zsh to 5.4.2 (#6609) 2017-12-08 10:19:40 -07:00
lingnanyuan
3474dd5d40 r-tidycensus: Create new package. (#6595) 2017-12-08 10:18:45 -07:00
lingnanyuan
cc20ad0eec r-rgdal: Create new package. (#6593) 2017-12-08 10:18:29 -07:00
lingnanyuan
85c4224474 r-tigris: Create new package. (#6591) 2017-12-08 10:18:11 -07:00
nshtg
173236dacf Update openSSL to 1.0.2m/1.1.0g (#6596) 2017-12-08 10:13:58 -07:00
nshtg
fd764b9946 Update openSSH to 7.6p1 (#6598) 2017-12-08 10:13:41 -07:00
nshtg
1954075091 Update tmux to 2.6 (#6597) 2017-12-08 10:13:22 -07:00
Tzanio Kolev
2343e5185d Updated hash for v1.0 tag of Laghos (#6626) 2017-12-08 10:12:33 -07:00
Sergey Kosukhin
bd92cc0a1a Package 'openjpeg': set INSTALL_NAME_DIR on MacOS for old versions. (#6603) 2017-12-08 13:36:20 +01:00
Paschalis Korosoglou
1bdea98978 r-rhtslib: added build dependency on autoconf (#6627) 2017-12-08 11:18:25 +01:00
Eric
1c72a5da3a py-cogent: Create new package (#6624) 2017-12-08 10:38:37 +01:00
Denis Davydov
23d56a75ab dealii: update boost dependency (#6586) 
(i) blacklst 1.65.0 due to issues on Ubuntu with gcc 5.4.0
(ii) add a patch for 1.65.1 to fix serialization
(iii) simplify boost's depends_on()
 2017-12-08 10:37:54 +01:00
lingnanyuan
96476a32e5 py-htseq: Create new package. (#6623) 2017-12-08 10:36:57 +01:00
Brian Van Essen
20fc7d56d7 Candle benchmarks update (#6619) 
Added a dependency on HDF5 support for the CANDLE benchmarks.
 2017-12-08 10:34:49 +01:00
Benedikt Riedel
df184c707a Adding openssl dependency to xrootd. Closes #6601 (#6618) 2017-12-08 10:33:08 +01:00
nshtg
17692d6c05 Update vim to 8.0.1376 (#6599) 2017-12-08 10:29:50 +01:00
Eric
6f34c68aff subread: Add version 1.6.0 (#6615) 2017-12-08 10:26:18 +01:00
Denis Davydov
26e109027b qrupdate: fix blas/lapack and compilation of macOS (#6614) 2017-12-08 10:24:44 +01:00
Eric
62d5bb41a8 py-reportlab: Create new package (#6612) 2017-12-08 10:22:46 +01:00
nshtg
636ed371d8 Update fish to 2.7.0 (#6608) 2017-12-08 10:15:40 +01:00
Eric
91eca9143e bedtools2: Add version 2.27.0 (#6606) 2017-12-08 10:13:13 +01:00
Kelly (KT) Thompson
147a12dd06 Provide a patch to allow hdf5@1.10.1 to build with intel/18.0.1. (#6583) 
This is known issue.  See:

https://software.intel.com/en-us/forums/intel-fortran-compiler-for-linux-and-mac-os-x/topic/747951.
 2017-12-08 09:55:06 +01:00
Sergey Kosukhin
a593553d48 Update for 'eccodes'. (#6604) 2017-12-08 09:34:37 +01:00
Sergey Kosukhin
a110a86ad6 Update for 'grib-api'. (#6605) 2017-12-08 09:33:30 +01:00
Jon Rood
69e76a0a89 Update openfast package to explicity pass MPI implementation during cmake configure. (#6590) 2017-12-08 09:09:35 +01:00
Axel Huebl
f49c186f4f wxWidgets: Fix builds (#6560) 
- depends on GTK+ with X enabled
  (btw, non-X backends are deprecated/removed in GTK+)
- patch for 3.0.1-3.0.2: missing include caused multiple
  `error: call of overloaded ‘abs(XYPOSITION)’ is ambiguous`
  (seen in GCC 6.3.0); fixed in 3.0.3+
 2017-12-07 08:33:08 +01:00