eugeneswalker
3045ed0e43
Revert "gitlab ci: temporarily disable darwin aarch64 ( #39974 )" ( #40052 )
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This reverts commit 2c13361b09
2023-09-18 12:48:32 -06:00
Freifrau von Bleifrei
2de0e30016
SeLaLib: add new package ( #39847 )
2023-09-18 13:15:10 -05:00
Manuela Kuhn
15085ef6e5
py-tornado: add 6.3.3 ( #39949 )
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* py-tornado: add 6.3.3
* Fix style
2023-09-18 11:18:36 -06:00
Manuela Kuhn
0c2849da4d
py-twine: add 4.0.2 ( #40026 )
2023-09-18 11:50:51 -05:00
Manuela Kuhn
75eeab1297
py-types-psutil: add 5.9.5.16 ( #40027 )
2023-09-18 11:49:20 -05:00
Dom Heinzeller
b8e32ff6b3
Fix several build errors for hdf-eos2 (not only but in particular on macOS w/ apple-clang) ( #39877 )
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Fix permissions for configure file in var/spack/repos/builtin/packages/hdf-eos2/package.py, fix dependencies to match what hdf provides, update compiler flags for apple-clang
2023-09-18 18:47:25 +02:00
Manuela Kuhn
e7924148af
py-types-typed-ast: add 1.5.8.7 ( #40047 )
2023-09-18 11:47:00 -05:00
Manuela Kuhn
d454cf4711
py-types-urllib3: add 1.26.25.14 ( #40048 )
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* py-types-urllib3: add 1.26.25.14
* Fix style
2023-09-18 11:44:26 -05:00
George Young
ba81ef50f5
cpat: new package @3.0.4 ( #40022 )
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* cpat: new package @3.0.4
* Update package.py
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18 11:37:21 -05:00
Manuela Kuhn
d5dd4b8b5d
py-types-python-dateutil: add 2.8.19.14 ( #40038 )
2023-09-18 11:34:53 -05:00
Manuela Kuhn
0e47548cb6
py-types-requests: add 2.31.0.2 ( #40039 )
2023-09-18 11:34:01 -05:00
Manuela Kuhn
74974d85f6
py-types-setuptools: add 68.2.0.0 ( #40040 )
2023-09-18 11:33:01 -05:00
dependabot[bot]
7925bb575e
build(deps): bump docker/login-action from 2.2.0 to 3.0.0 ( #39966 )
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Bumps [docker/login-action](https://github.com/docker/login-action ) from 2.2.0 to 3.0.0.
- [Release notes](https://github.com/docker/login-action/releases )
- [Commits](465a07811f...343f7c4344
2023-09-18 18:23:37 +02:00
dependabot[bot]
976cb02f78
build(deps): bump docker/setup-qemu-action from 2.2.0 to 3.0.0 ( #39968 )
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Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action ) from 2.2.0 to 3.0.0.
- [Release notes](https://github.com/docker/setup-qemu-action/releases )
- [Commits](2b82ce82d5...68827325e0
2023-09-18 18:22:58 +02:00
dependabot[bot]
f1bdc74789
build(deps): bump docker/build-push-action from 4.2.1 to 5.0.0 ( #39969 )
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Bumps [docker/build-push-action](https://github.com/docker/build-push-action ) from 4.2.1 to 5.0.0.
- [Release notes](https://github.com/docker/build-push-action/releases )
- [Commits](0a97817b6a...0565240e2d
2023-09-18 18:22:41 +02:00
Lydéric Debusschère
920347c21a
py-werkzeug: Add version 0.12.2 required by py-graphene-tornado @2.6.1 ( #39984 )
2023-09-18 11:21:22 -05:00
Ben Cowan
c00ece6cf2
Enabled building GCC 13.1 on darwin/aarch64. ( #38667 )
2023-09-18 18:20:19 +02:00
Juan Miguel Carceller
7b0157c7e7
python: Don't prefer 3.10 ( #40036 )
2023-09-18 10:08:49 -06:00
Lydéric Debusschère
1b3a2ba06a
[add] py-ldap3: new recipe, required by py-metomi-rose ( #39982 )
2023-09-18 11:06:23 -05:00
Manuela Kuhn
dc22a80f86
py-traits: add 6.4.2 ( #39976 )
2023-09-18 10:57:47 -05:00
Manuela Kuhn
27d6a75692
py-trove-classifiers: add 2023.8.7 ( #39977 )
2023-09-18 10:50:55 -05:00
George Young
70456ce4a7
py-rseqc: add 5.0.1 ( #39953 )
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* py-rseqec: add 5.0.1
* Update package.py
* style ...
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18 10:49:58 -05:00
Lydéric Debusschère
078369ec2b
[chore] py-aniso8601: Add version 7.0.0 ( #39808 )
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* [chore] py-aniso8601: Add version 3.0.2 required by py-graphene
* py-aniso8601: Add version 7.0.0 and constraints on python version
* py-aniso8601: fix style
* [fix] py-aniso8601: remove version 3.0.2 which depends on removed version of python; set the minimal version of python to 3.7
* py-aniso8601: remove version constraint on python
2023-09-18 10:46:30 -05:00
Diego Alvarez S
da8e022f6b
Nextflow: add 22.04.3 ( #40034 )
2023-09-18 17:39:27 +02:00
George Young
c8a3f1a8ae
chexmix: new package ( #38441 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18 17:36:44 +02:00
Michael Kuhn
be3f7b5da3
checksum: use FIXME instead of FIX ME when adding versions ( #40050 )
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The former is highlighted by editors, while the latter is not.
2023-09-18 17:31:11 +02:00
Martin Aumüller
68d7ce3bb6
coin3d: apply upstream patches to fix build on Centos 8 ( #39839 )
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fixes undefined references to dlerror, dlopen, dlsym, dlclose and
XDefaultScreenOfDisplay, XScreenNumberOfScreen, XCreatePixmap, XFree, XFreePixmap, XCloseDisplay, XOpenDisplay
2023-09-18 17:16:56 +02:00
Rémi Lacroix
7a490e95b6
Julia: Fix sha256 for some LLVM patches ( #40041 )
2023-09-18 10:52:00 +02:00
Joscha Legewie
088e4c6b64
grass: Update spec for gdal dependency ( #38396 )
2023-09-15 21:36:46 -05:00
Caetano Melone
76816d722a
CI: add spec to job vars ( #39905 )
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* CI: add details about built spec to ci job variables
Co-authored-by: Alec Scott <alec@bcs.sh>
Co-authored-by: Alec Scott <hi@alecbcs.com>
2023-09-15 14:40:00 -06:00
Scott Wittenburg
cbabdf283c
gitlab ci: submit the correct audience for protected publish jobs ( #40046 )
2023-09-15 20:09:18 +00:00
John W. Parent
060bc01273
Windows RPATHing: fix symlink error ( #39933 )
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With 349ba83
2023-09-15 12:55:18 -07:00
Harmen Stoppels
0280ac51ed
linux-headers: drop rsync dep, add new version ( #39867 )
2023-09-15 17:23:29 +02:00
David Gardner
bd442fea40
update sha256 after new tarball uploads ( #40030 )
2023-09-15 17:20:37 +02:00
Massimiliano Culpo
fb9e5fcc4f
Group primitive url/path handling functions together ( #40028 )
2023-09-15 15:43:23 +02:00
Jack Morrison
bc02453f6d
Sandia OpenSHMEM: Update to include version 1.5.2 ( #40025 )
2023-09-15 08:38:47 -04:00
dependabot[bot]
74a6c48d96
build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs ( #40029 )
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Bumps [sphinx](https://github.com/sphinx-doc/sphinx ) from 7.2.5 to 7.2.6.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases )
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst )
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6 )
---
updated-dependencies:
- dependency-name: sphinx
dependency-type: direct:production
update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-15 09:51:51 +02:00
Alex Richert
854f169ded
Add shared and pic variants to libxml2 ( #38094 )
2023-09-14 19:57:52 -07:00
Adam Grofe
94c2043b28
Add Scine QCMaquis recipe to builtin packages ( #39709 )
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* Add Scine QCMaquis recipe to builtin packages
* Format scine-qcmaquis recipe using black
* Remove import os from scine-qcmaquis recipe
* Reduce length of symmetries line in scine-qcmaquis
* Add myself as a maintainer of the scine-qcmaquis recipe
* Update Scine-QCMaquis recipe following the review
PR URL: https://github.com/spack/spack/pull/39709
Changes:
- Updated Symmetries variant to us multi feature
- Added dependency to boost+chrono since it was undocumented
- Use define_from_variant to setup CMake args
- Make version 3.1.2 be preferred since 3.1.3 build is broken
* Change build_tests boolean condition
---------
Co-authored-by: Adam Grofe <adamgrofe@microsoft.com>
2023-09-14 17:57:42 -04:00
Scott Wittenburg
579df768ca
gitlab ci: Put Cray binaries in public mirrors ( #39938 )
2023-09-14 15:11:29 -06:00
George Young
e004db8f77
meme: add 5.5.4, correct dependencies ( #40014 )
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* meme: add 5.5.4, correct dependencies
* variant renaming
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-14 13:52:40 -05:00
George Young
2d1cca2839
gffread: new package @0.12.7 ( #40015 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-14 13:34:22 -04:00
Alex Richert
8dae369a69
Set # of ninja procs to 'make_jobs' for scipy ( #293 ) ( #38831 )
2023-09-14 13:08:59 -04:00
Alex Richert
0d76436780
Add pic option & maintainer to lz4 ( #38095 )
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Co-authored-by: Greg Becker <becker33@llnl.gov>
2023-09-14 09:50:11 -07:00
Massimiliano Culpo
34402beeb7
Ensure PythonExtension is consistent when finding externals ( #40012 )
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PythonExtension is a base class for PythonPackage, and
is meant to be used for any package that is a Python
extension but is not built using "python_pip".
The "update_external_dependency" method in the base
class calls another method that is defined in the derived
class.
Push "get_external_python_for_prefix" up in the hierarchy
to make method calls consistent.
2023-09-14 18:26:40 +02:00
Dan LaManna
6a249944f5
Add OIDC tokens to gitlab-ci jobs ( #39813 )
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* Add OIDC tokens to gitlab-ci jobs
This should allow us to start issuing just-in-time generated
credentials for CI jobs that need to modify binary mirrors. The "aud"
claim of the token describes what the token is allowed to do. The
claim is verified against a set of rules on the IAM role using signed
information from GitLab. See spack-infrastructure for the claim
verification logic.
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Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-09-14 09:59:25 -06:00
Harmen Stoppels
6838ee6bb8
Add efficient deptype flag and spack.deptypes module ( #39472 )
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This commit replaces the internal representation of deptypes with `int`, which is more compact
and faster to operate with.
Double loops like:
```
any(x in ys for x in xs)
```
are replaced by constant operations bool(xs & ys), where xs and ys are dependency types.
Global constants are exposed for convenience in `spack.deptypes`
2023-09-14 12:25:24 +02:00
Massimiliano Culpo
d50f296d4f
data-vis-sdk: make llvm~libomptarget the default ( #40007 )
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Currently the configuration of the pipeline is such that
there are multiple "optimal" solutions. This is due to
the pipeline making ~lld the default for LLVM, but leaving
+libomptarget from package.py
Since LLVM recipe has a:
conflicts("~lld", "+libomptarget")
clingo is forced to change one of the two defaults, and
the penalty for doing so is the same for each. Hence, it
is random whether we'll get +libomptarget+lld
or ~libomptarget~lld.
This fixes it by changing also the default for libomptarget.
2023-09-14 09:19:47 +02:00
Alex Richert
e5d227e73d
Support static case for find_libraries() in xz ( #38100 )
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* Update xz
* add maintainer to xz
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2023-09-13 22:34:11 -04:00
Alex Richert
af7b4c5a2f
Add pic variant for libpng ( #37964 )
2023-09-13 20:43:10 -04:00
