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meme: add 5.5.4, correct dependencies (#40014)

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* meme: add 5.5.4, correct dependencies
* variant renaming

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
This commit is contained in:
George Young 2023-09-14 19:52:40 +01:00 committed by GitHub
parent 2d1cca2839
commit e004db8f77
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GPG key ID: 4AEE18F83AFDEB23
1 changed files with 24 additions and 21 deletions
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45
var/spack/repos/builtin/packages/meme/package.py
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@ -15,6 +15,7 @@ class Meme(AutotoolsPackage):
homepage = "https://meme-suite.org"
url = "http://meme-suite.org/meme-software/5.1.1/meme-5.1.1.tar.gz"
version("5.5.4", sha256="cda6011c2b855bf2563c4e7a2c255e11e99b5b6e5e73736ff008942507580153")
version("5.3.0", sha256="b2ddec9db972fcf77b29c7deb62df8b1dd8a6638c13c1aa06a5d563c4a7ff756")
version("5.2.0", sha256="0cbf8c2172e9b6c07855b8aeec457f4825f0b132f8cbb11192880e2f6033f54f")
version("5.1.1", sha256="38d73d256d431ad4eb7da2c817ce56ff2b4e26c39387ff0d6ada088938b38eb5")
@ -22,35 +23,37 @@ class Meme(AutotoolsPackage):
version("4.11.4", sha256="3e869ff57e327a9c8615dbef784e3f1095f7f7a0120cecd55efe10c3f2ee8eb3")
variant("mpi", default=True, description="Enable MPI support")
variant("image-magick", default=False, description="Enable image-magick for png output")
variant("magick", default=False, description="Enable imagemagick for png output")
depends_on("zlib-api", type=("link"))
depends_on("libgcrypt", type=("link"))
depends_on("perl", type=("build", "run"))
depends_on("python@2.7:", type=("build", "run"))
depends_on("mpi", when="+mpi")
depends_on("imagemagick", type=("build", "run"), when="+image-magick")
# Perl runtime deps
depends_on("perl@5.16:", type=("build", "run"))
depends_on("perl-xml-parser", type=("build", "run"))
depends_on("perl-xml-simple", when="@4.5.0:")
depends_on("libxml2", type=("build", "run"))
depends_on("libxslt", type=("build", "run"))
depends_on("perl-xml-simple", type=("build", "run"))
# Python runtime deps
depends_on("python", type=("build", "run"))
# Build deps
depends_on("zlib-ng")
depends_on("ghostscript")
depends_on("libxml2")
depends_on("libxslt")
# Variant deps
depends_on("imagemagick", type=("build", "run"), when="+magick")
depends_on("mpi", when="+mpi")
patch("arm.patch", when="%arm")
def patch(self):
# Remove flags not recognized by the NVIDIA compiler
if self.spec.satisfies("%nvhpc"):
filter_file("-fno-common", "", "configure")
filter_file("-Wno-unused", "", "configure")
def url_for_version(self, version):
url = "http://meme-suite.org/meme-software/{0}/meme{1}{2}.tar.gz"
sep = "-" if version >= Version("5.0.2") else "_"
return url.format(version.up_to(3), sep, version)
def configure_args(self):
spec = self.spec
args = []
if "~mpi" in spec:
args += ["--enable-serial"]
return args
def patch(self):
# Remove flags not recognized by the NVIDIA compiler
if self.spec.satisfies("%nvhpc"):
filter_file("-fno-common", "", "configure")
filter_file("-Wno-unused", "", "configure")
if "~mpi" in self.spec:
return ["--enable-serial"]
return []