Commit graph

23562 commits

Author SHA1 Message Date
Andrey Prokopenko
7763c7a1cc
Deprecate pre-release ArborX version (#27248) 2021-11-09 12:04:54 +01:00
Mikhail Titov
e272e5039d
rct: update packages (RP, RU) with new versions (#27306) 2021-11-09 12:03:35 +01:00
Jean-Paul Pelteret
8f88f34973
SymEngine: Update package to 0.8.1 (#27304) 2021-11-09 12:03:07 +01:00
Jean-Paul Pelteret
b4a2fd1fcd
deal.II: Update for 9.3.2 release (#27303) 2021-11-09 12:02:51 +01:00
Massimiliano Culpo
752aa7adde
Allow triggering the "Bootstrap" workflow manually (#27298) 2021-11-09 12:02:24 +01:00
Robert Underwood
2153ac5863
openmpi fix external find for 0.17 (#27255) 2021-11-09 11:58:14 +01:00
TZ
808375429d
openmpi: does not support "--without-pmix" (#27258)
Open MPI currently fails to build with scheduler=slurm if +pmix is
not given with a fatal error due to ``config_args +=
self.with_or_without('pmix', ...)`` resulting in --without-pmix.
However, Open MPI's configure points out "Note that Open MPI does
not support --without-pmix."

The PR only adds "--with-pmix=PATH" if +pmix is part of the spec.
Otherwise, nothing is added and Open MPI can fall back to its
internal PMIX sources.

(The other alternative would be to depend on +pmix in for
scheduler=slurm as is done for +pmi.)
2021-11-09 11:55:56 +01:00
Dylan Simon
2b990b400e
make --enable-locks actually enable locks (#24675) 2021-11-09 10:52:08 +00:00
Desmond Orton
34be8d0670
Rebased develop to fix pipeline issues (#27209) 2021-11-09 11:47:59 +01:00
Desmond Orton
eae2027db7
Build Fix (#27210) 2021-11-09 11:46:51 +01:00
Hanwen
65aadf0332
aws-parallelcluster: add v2.11.3 (#27244) 2021-11-09 11:42:09 +01:00
Glenn Johnson
44bf54edee
xrootd: add new version and variant (#27245)
- add version 5.3.2
- add krb variant
- add patch to not look for systemd
2021-11-09 11:41:39 +01:00
estewart08
daa8a2fe87
[AMD][rocm-openmp-extras] Update for ROCm 4.3. (#25482)
- Added new checksums for 4.3.
- Now using llvm-amdgpu ~openmp in order to use the rocm-device-libs
  build as external project in llvm-amdgpu package. We still need
  to pull device-libs in using resource for the build as some headers
  are not installed.
- Updated symlink creation to now remove an existing link if  present
  to avoid issues on partial reinstalls when debugging.
- Adjusted the flang_warning to be a part of Cmake options instead of
  a filter_file for better compatability.
- The dependency on hsa-rocr-dev created some problems as type was changed
  to the default build/link. This issue was because ROCr uses libelf and
  the build of openmp expects elfutils. When link is specified libelf
  was being found in the path first, causing errors. This was
  introduced with the llvm-amdgpu external project build of device-libs.
- On a bare bone installation of sles15 it was noted that libquadmath0 was
  needed as a dependency. On 18.04 gcc-multilib was also needed.

* Workaround for libelf headers being used instead of elfutils.
2021-11-09 10:36:13 +00:00
Cameron Rutherford
b8d6351f80
Remove requiring hiop+shared in ExaGO. (#27141) 2021-11-09 11:35:10 +01:00
Cory Bloor
7cb3e9bf43
hipblas: Add spack test support (#27074) 2021-11-09 11:32:36 +01:00
luker
8ce37d9153
HPCG Fix for the Cray complier (CCE) (#25197)
CCE's c++ compiler (Clang based) does not accept the '-ftree-vectorizer-verbose=0'
flag. That flag is removed and a suitable substitution is made.
2021-11-09 10:26:02 +00:00
Cory Bloor
a9c6881bbc
rocsolver: Add spack test support (#26919) 2021-11-09 11:25:03 +01:00
Ben Darwin
7c118ee22b
ants: fix build by setting BUILD_TESTING=OFF (#26768)
Due to Kitware API changes, default ANTs builds were failing, presumably for all versions (https://github.com/ANTsX/ANTs/issues/1236).
This commit defaults BUILD_TESTING to OFF, preventing calls against
these APIs and fixing all versions.
Note that the ANTs test suite was not clean anyway (e.g. ANTs/#842).
2021-11-09 11:19:32 +01:00
Valentin Volkl
a3dd0e7861
build_environment: clean *_ROOT variables (#26474)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-11-09 11:16:42 +01:00
Joseph Wang
abdd206f65
add libtirpc for rpc/types.h (#26628)
rpc/types.h has been removed in recent glibc
2021-11-09 11:14:28 +01:00
Sreenivasa Murthy Kolam
1d09474975
fix rvs build issue by using yaml-cpp spack recipe (#26000) 2021-11-09 11:09:15 +01:00
Tsuyoshi Yamaura
3484434fe2
New package: SCALE (#25574) 2021-11-09 00:19:47 -08:00
iarspider
f164bae4a3
Python tests: skip importing weirdly-named modules (#27151)
* Python tests: allow importing weirdly-named modules

e.g. with dashes in name

* SIP tests: allow importing weirdly-named modules

* Skip modules with invalid names

* Changes from review

* Update from review

* Update from review

* Cleanup
2021-11-08 19:22:33 +00:00
Brian Van Essen
db504db9aa
Added new hash values for recent versions. (#27294) 2021-11-08 19:02:30 +00:00
iarspider
bff894900e
New version: py-lz4 3.1.3; use external lz4 instead of bundled one (#27282)
* New version: py-lz4 3.1.3; use external lz4 instead of bundled one

* Update var/spack/repos/builtin/packages/py-lz4/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Changes from review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-08 18:14:46 +00:00
iarspider
71f8460357
New versions of py-keyring: 23.1.0, 23.2.0, 23.2.1 (#27276) 2021-11-08 10:59:40 -06:00
iarspider
f9d0007546
New version: py-lazy-object-proxy 1.6.0 (#27277) 2021-11-08 10:58:26 -06:00
iarspider
14232b40d9
New version: py-lockfile 0.12.2 (#27279) 2021-11-08 10:56:34 -06:00
Seth R. Johnson
18d506c7fb
trilinos: disable optional packages by default (#26815) 2021-11-08 08:29:35 -05:00
Maciej Wójcik
c384ac88a0
gromacs-swaxs: new package (#26902) 2021-11-08 13:51:23 +01:00
Maciej Wójcik
8f59707f04
gromacs-chain-coordinate: inherit from gromacs package (#27246) 2021-11-08 13:50:42 +01:00
Massimiliano Culpo
62f0c70a8c
OpenSUSE: try to apply workaround to avoid CI error (#27275) 2021-11-08 11:56:19 +00:00
Ben Bergen
1fc753af66
Updated Versions (#27268)
- Added 7.1 release
- Added master git branch
2021-11-07 19:41:49 -07:00
Brice Videau
f02dec2bbb
Update py-ytopt package and add necessary dependencies (#26879)
* Add spack package py-ytopt-team-ytopt and required dependencies.

* Removed old ytop package.

* Added author as maintainer.

* Fix style.

* Update var/spack/repos/builtin/packages/py-config-space/package.py

Update python dependency to 3.7

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-config-space/package.py

Remove run dependency from py-cython.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-config-space/package.py

Added run dependency type for py-pyparsing.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Updated description of py-dh-scikit-optimize.

* Source py-dh-scikit-optimize from PyPI.

* Added latest py-dh-scikit-optimize version.

* Made plots option False by default for py-dh-scikit-optimize.

* Removed 0.9.4 as it needs additional dependencies.

* Added version dependencies.

* Added missing py-joblib dependencies.

* Added run dependency type.

* Added python 2.7+ as supported for py-pyaml.

* Change py-config-space to py-configspace.

* Added dependency on python 3.6+.

* Fix py-configspace package naming.

* Changed py-autotune to py-ytopt-autotune.

* Update var/spack/repos/builtin/packages/py-pyaml/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added debug variant with py-ray dependency.

* Added missing py-mpi4py missing dependency.

* Removed erroneous variant.

* Added debug variant to py-ray.

* Fix indentation.

* Removed debug variant of py-ray.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-06 10:52:30 -05:00
Todd Gamblin
285548588f Update CHANGELOG.md for 0.17.0 2021-11-05 17:22:32 -07:00
Todd Gamblin
0e3d0516e6 bump version number to 0.17.0 2021-11-05 17:11:37 -07:00
Ben Darwin
12429bda35
py-itk: fix dependencies (#27164) 2021-11-05 16:26:18 -05:00
Seth R. Johnson
c5be548046
New package: GNDS (#27176)
Adds a new package for the AMPX/SCALE implementation of the GNDS
interface,
https://www.oecd.org/publications/specifications-for-the-generalised-nuclear-database-structure-gnds-94d5e451-en.htm
.
2021-11-05 14:04:47 -06:00
Bernhard Kaindl
d9d1319442
qt: replace conflicts('%gcc@11:', when='@5.9:5.14') with -include limits (#27241)
Noting that missing numeric_limits was the cause of the compile issues
with gcc-11, I tested adding -include limits fixing @5.9:5.14%gcc@11.
Therefore, we can replace the conflicts('%gcc@11:', when='@5.9:5.14').

Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-11-05 14:06:31 -04:00
Theofilos Manitaras
549bd70449
py-mpi4py: Add newer versions (#27239)
* py-mpi4py: Add newer versions

* Address PR comments
2021-11-05 11:07:44 -06:00
Axel Huebl
4f692e4d9f
openPMD-api: 0.14.3 (#27211)
Add the latest release.
2021-11-05 10:53:03 -06:00
Massimiliano Culpo
0feb5ec70a
Prevent additional properties to be in the answer set when reusing specs (#27240)
* Prevent additional properties to be in the answer set when reusing specs

fixes #27237

The mechanism to reuse concrete specs relies on imposing
the set of constraints stemming from the concrete spec
being reused.

We also need to prevent that other constraints get added
to this set.
2021-11-05 10:52:44 -06:00
Peter Brady
178e15c39d
ctags uses custom autogen.sh script (#27229) 2021-11-05 09:46:09 -07:00
Sinan
0b4b731479
package/py-zarr_add_v2.10.2 (#27212)
* package/py-zarr_add_v2.10.2

* improve python dep version constraints

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-11-05 09:23:41 -05:00
Bernhard Kaindl
91c7c24260
hdf5: Skip racy test cases(which loop endless on many cores) (#27068) 2021-11-05 09:59:45 -04:00
Seth R. Johnson
42d8e9eeb5
trilinos: explicitly use variants instead of spec for TPLs (#27221)
Fixes https://github.com/spack/spack/pull/27188#issuecomment-961212214
2021-11-05 09:07:33 -04:00
Manuela Kuhn
d2c26fef46
r-readr: add 2.0.2 (#27177) 2021-11-05 06:34:40 -06:00
Mikhail Titov
d7ae9414c2
exaworks: swift-t package (#27234) 2021-11-05 10:46:35 +01:00
Carlos Bederián
b06198f1d4
gmsh: add dependency on gl and glu providers when +fltk (#27169) 2021-11-05 10:45:53 +01:00
Harmen Stoppels
8bb5ed8464
make version docs reflect reality (#27149)
* make version docs reflect reality

* typo and make things

* 2.6 -> 2.7 in example
2021-11-05 09:39:31 +00:00