Commit graph

32324 commits

Author SHA1 Message Date
Adam J. Stewart
7327d2913a
ML CI: get more packages working on macOS (#39199) 2023-08-08 10:59:24 +02:00
Axel Huebl
8f8a1f7f52
C-Blosc2: add v2.10.1 (#39297)
This adds the latest C-Blosc2 release, the first to add CMake
CONFIG install files for easier downstream usage of the installed
library and CMake targets.
2023-08-08 10:08:12 +02:00
Carlos Bederián
eb8d836e76
aocc: add v4.1.0 (#39280) 2023-08-08 10:07:12 +02:00
Jen Herting
bad8495e16
parallel-hashmap: add new package (#39299) 2023-08-08 10:03:01 +02:00
Cristian Di Pietrantonio
43de7f4881
plumed: add v2.9.0, v2.8.3 (#39324)
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-08 09:59:03 +02:00
Hariharan Devarajan
84585ac575
cpp-logger: add new package (#39303) 2023-08-08 09:27:44 +02:00
Harmen Stoppels
86f9d3865b
Fix broken inode assertion (#39188) 2023-08-08 09:21:23 +02:00
Adam J. Stewart
834e7b2b0a
py-cartopy: add v0.22.0 (#39309) 2023-08-08 08:53:04 +02:00
shanedsnyder
c14f23ddaa
Add darshan 3.4.4 release (#39310) 2023-08-08 08:49:27 +02:00
Sinan
49f3681a12
package:py-wand add build env var, add new version (#39281)
* package:py-wand add build env var, add new version

* fix style

* [@spackbot] updating style on behalf of Sinan81

* improve

* improve

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-08-07 19:45:48 -05:00
Jen Herting
19e1d10cdf
[py-marshmallow] added version 3.19.0 (#38972) 2023-08-07 19:44:44 -05:00
Jen Herting
7caf2a512d
[py-srsly] added version 2.4.6 (#38970)
* [py-srsly] added version 2.4.6

* [py-srsly] added dependency on py-catalogue

* [py-srsly] added conflict on newer versions of py-cython
2023-08-07 19:44:34 -05:00
Jen Herting
1f6e3cc8cb
[py-pathy] new package (#38968)
* [py-pathy] new package

* [py-pathy] removed lines for unsupported versions of python
2023-08-07 19:41:21 -05:00
Jen Herting
169c4245e0
[py-gensim] added version 4.3.1 (#38272)
* [py-gensim] added version 4.3.1

* [py-gensim] flake8

* [py-gensim] removed version limitation on py-cython
2023-08-07 18:56:53 -05:00
Jen Herting
ee1982010f
[py-clean-text] added version 0.6.0 (#38271)
* [py-clean-text] added missing dependency on py-poetry

* [py-clean-text] added version 0.6.0

* [py-clean-text] Made required changes
2023-08-07 18:52:22 -05:00
Melven Roehrig-Zoellner
dd396c4a76
freeglut: set correct library name (#39300) 2023-08-07 19:08:08 -04:00
Jean Luca Bez
235802013d
h5bench: include tests for E4S and new version (#37830)
* include tests for h5bench
* update to new test format
* update path
* improve description and detect MPI runner
* fix test name
* Include new release
* update with corrections
* include SLURM dependency and reduce test to one process
* fixes on filters
* fix on oversubscribe
* suggested fixes

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-07 11:43:32 -07:00
Harmen Stoppels
e1f07e98ae
libdeflate: new versions, switch to cmake (#39062) 2023-08-07 13:48:12 -04:00
Adam J. Stewart
60aee6f535
py-torchmetrics: add v1.0.2 (#39274) 2023-08-07 10:43:43 -07:00
Adam J. Stewart
2510dc9e6e
py-timm: add v0.9.5 (#39275) 2023-08-07 10:42:14 -07:00
Christopher Christofi
5607dd259b
samtools: add 1.17 (#39287) 2023-08-07 10:29:03 -07:00
Harmen Stoppels
7bd5d1fd3c
use {%compiler.name}{@compiler.version} in matching_specs (#39247) 2023-08-07 18:54:10 +02:00
Harmen Stoppels
f6104cc3cb
spack: bump package (#39184) 2023-08-07 18:52:14 +02:00
kwryankrattiger
b54d286b4a
CI: remove redundant sections (#38514)
Refactor gitlab ci configs so that mac and cray jobs can reuse as much higher level
configuration as possible.

* CI: remove redundant sections
* CI: Include base linux CI configs in cray stacks

Relocation and runner mapping is consistent between cray and linux runners.

* Export user cache path in before script
* CI: add GPG root for mac runners
* Disable user configs

Metal runners share a ~ directory

* Disable user config and add configs in activate env
2023-08-07 10:23:16 -06:00
Seth R. Johnson
ea9c488897
celeritas: new version 0.3.1 (#39288) 2023-08-07 12:16:30 +01:00
Massimiliano Culpo
ba1d295023
Extract prefix locks and failure markers from Database (#39024)
This PR extracts two responsibilities from the `Database` class:
1. Managing locks for prefixes during an installation
2. Marking installation failures

and pushes them into their own class (`SpecLocker` and `FailureMarker`). These responsibilities are also pushed up into the `Store`, leaving to `Database` only the duty to manage `index.json` files.

`SpecLocker` classes no longer share a global list of locks, but locks are per instance. Their identifier is simply `(dag hash, package name)`, and not the spec prefix path, to avoid circular dependencies across Store / Database / Spec.
2023-08-07 06:47:52 -04:00
Harmen Stoppels
27f04b3544
Picklable HTTPError (#39285) 2023-08-07 10:48:35 +02:00
Brian Van Essen
8cd9497522
Bugfix spack module files (#39282)
* Fixed the LD_LIBRARY_PATH to use the lib64 directory.
* On AMD systems the llvm/lib directory is not properly put into the LD_LIBRARY_PATH.
* Added both lib and lib64 paths for libfabric.
* Split the prepend statements.
2023-08-05 20:26:00 -07:00
Harmen Stoppels
ef544a3b6d
Add a more detailed HTTPError (#39187) 2023-08-05 11:16:51 +02:00
Adam J. Stewart
4eed832653
py-pyqt6: add new package (#32696) 2023-08-04 18:49:54 -05:00
Wouter Deconinck
5996aaa4e3
acts: new versions 23.[3-5].0, 24.0.0, 25.0.[0-1], 26.0.0, 27.[0-1].0, 28.0.0 (#37055)
* acts: new version 23.[3-5].0, 24.0.0
- https://github.com/acts-project/acts/compare/v23.2.1...v23.3.0
- https://github.com/acts-project/acts/compare/v23.3.0...v23.4.0
- https://github.com/acts-project/acts/compare/v23.4.0...v23.5.0
- https://github.com/acts-project/acts/compare/v23.5.0...v24.0.0
* acts: update dependencies
* acts: new versions 25.0.0, 25.0.1, 26.0.0, 27.0.0
* [@spackbot] updating style on behalf of wdconinc
* acts: rm duplicate edm4hep variant definition
* acts: depends_on podio 0.6: open ended range
* acts: new version 27.1.0
* acts: depends_on mlpack when +mlpack
* acts: new version 28.0.0
* actsvg: new version 0.4.35
* acts: depends_on actsvg@0.4.35: when @28:

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-08-04 16:47:15 -07:00
Brian Van Essen
4957607005
FIX libfabric module file (#39271)
* Add support to export the LD_LIBRARY_PATH for the libfabric package
and subsequent module files.

Fix the AWS OFI RCCL package so that it prepends the enviornment
variables.

* Fixed comment
2023-08-04 15:04:54 -07:00
Matt Drozt
78bca131fb
[py-smartredis] New Package (#39098)
* Create a spack package for smartredis python client

* make py-SR deps versions match docs

* tie SR v0.4.0 to redis-plus-plus v1.3.5

* looser extension lib deps for concretization

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Address reviewer feedback

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-04 09:44:23 -05:00
Brian Van Essen
045c5cea53
Replace code that captures a recipes generator statement in the cached (#39192)
cmake build.
2023-08-04 05:38:12 -07:00
Alex Richert
ea256145d9
Add MET, METplus packages (#39238)
* Add metplus package
* Add met package
* add metplus develop version
* copyright year var/spack/repos/builtin/packages/met/package.py
* copyright year var/spack/repos/builtin/packages/metplus/package.py

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-04 06:53:44 -04:00
Davide
0b2098850c
julia: add v1.9.2 (#39269) 2023-08-04 10:53:59 +02:00
pabloaledo
d2df0a29ce
salmon: update version (#39202)
* salmon: update version

---------

Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-03 17:57:17 -07:00
Vicente Bolea
92e9daec9b
adios2: add 2.9.1 release (#39257) 2023-08-03 17:28:55 -04:00
Erik Schnetter
d65437114a
openssl: Update to 3.1.2, 3.0.10, 1.1.1v (#39216) 2023-08-03 23:22:35 +02:00
Tamara Dahlgren
9a6e98e729
Revert checksum verification CI test (#39259) 2023-08-03 23:21:39 +02:00
Satish Balay
6515c16432
sowing: add version 1.1.26-p8 (#39258)
* sowing: add version 1.1.26-p8
* add in maintainer
2023-08-03 16:34:19 -04:00
Vanessasaurus
2826ab36f0
Automated deployment to update package flux-core 2023-08-03 (#39237)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-08-03 11:07:41 -07:00
Mark W. Krentel
c035512930
hpcviewer: add version 2023.07 (#39236)
Add version 2023.07, adjust the line for deprecated (anything using
java 8 is now deprecated).
2023-08-03 10:52:58 -07:00
Stephen Sachs
cfadba47d3
patchelf@0.18.0 breaks intel compiler libraries (#39253) 2023-08-03 13:33:48 -04:00
Matthieu Dorier
95391dfe94
kafka: new versions (#39249)
* kafka: version 2.13-3.5.0
* kafka: version 2.13-3.5.1 and 2.13-3.4.1
2023-08-03 10:14:48 -07:00
Matthieu Dorier
382ba99631
librdkafka: version 2.2.0 (#39250) 2023-08-03 10:05:35 -07:00
Alec Scott
f8e25c79bf
Add checksum CI test and verify with new versions for glab and gh (#39181) 2023-08-03 09:53:05 -07:00
Matthew Thompson
93b54b79d3
gftl-shared: new version 1.6.1 (#39217)
This PR adds gFTL-shared v1.6.1
2023-08-03 11:32:17 -04:00
Matthew Thompson
ff30efcebc
mapl: add package (#39227)
* mapl: add package
* Fix style
2023-08-03 09:40:34 -04:00
Seth R. Johnson
54514682d4
py-sphinx-rtd-theme: avoid concretizing 0.5 with Sphinx 7.0 (#39212)
* py-sphinx-rtd-theme: avoid concretizing 0.5 with Sphinx 7.0

* Update var/spack/repos/builtin/packages/py-sphinx-rtd-theme/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-03 09:31:05 -04:00