Commit graph

5684 commits

Author SHA1 Message Date
Eric Müller
70a8219f92 Adds liblockfile (and patch to avoid need for root) (#7621)
* --enable-shared *additionally* builds shared libraries
  (and it builds fast, so no variant here)
2018-03-28 07:54:40 -05:00
Massimiliano Culpo
8e998247a3
openmpi: updated package (#7574)
Modifications:
* Added zlib dependency, starting from version 3.0.0
* Added memchecker support  for debugging
* Remove mpirun and similar links if slurm is selected as a scheduler
2018-03-28 10:13:56 +02:00
Denis Davydov
388bb2ab3e petsc: add 3.8.4 (#7616) 2018-03-27 17:41:17 -05:00
David Orman
b5c02a2145 added htslib 1.7 and checksum (#7617) 2018-03-27 17:40:57 -05:00
Nils Deppe
bac47ece70 Add Catch v2.2.1 and v1.12.1 (#7615)
Catch v1 and v2 are maintained independently since v2 requires C++11
support. Updating both to the latest.
2018-03-27 17:40:26 -05:00
Leonhard Reichenbach
0d07be278a spades: fix build (#7608)
Version 3.11 works with gcc7
see: https://github.com/ablab/spades/issues/26
2018-03-27 07:22:34 -05:00
Yifan Zhu
d88f0b8e6d New package r-tidyverse and r-tidyselect (#6507)
* r-rlang: added version 0.1.4

* r-lubridate: added version 1.7.1 and dependency

* r-tidyselect: new package

* r-dplyr: added version 0.7.4

* r-rstudioapi: added version 0.7

* r-tidyr: added version 0.7.2 and other dependencies

* r-tidyverse: new package

* r-tidyr: updated dependencies

* r-tidyverse: added dependency r-rlang

* r-tidyverse: edited docstring

* r-tidyverse: fixed typo

* fix typo again
2018-03-26 14:27:12 -05:00
Eric Müller
28e49fa184 Add missing X-libs dependencies to vim+x (#7599) 2018-03-26 10:24:50 -05:00
Michael Kuhn
2a36c61d0f adios2: add support for Fortran bindings (#7600) 2018-03-26 16:16:38 +02:00
健美猫
658896a7a5 Remove pmi from the fabric list. (#7226) 2018-03-26 13:14:51 +02:00
Michael Kuhn
aeb73f958f zeromq: fix build (#7596)
pkg-config is also required for release versions.
2018-03-26 12:22:07 +02:00
Michael Kuhn
1aed76002a openssl: Add variant to use system certificates (#6396) 2018-03-26 12:20:55 +02:00
Massimiliano Culpo
a119a2d2d8
mpich: added version 3.2.1 (#7598) 2018-03-26 12:19:37 +02:00
Sinan
9f7dbd7f2d new package: Seqan (bioinformatics) (#7588)
* new package: Seqan (bioinformatics)

* add compiler requirements as conflicts

* fix typo

* add dependency types

* correct checksum
2018-03-25 08:50:17 -05:00
Massimiliano Culpo
dffd8f384c
python: added a variant to enable PGO + using --with-icc if compiled with Intel (#7496)
Added a variant to enable default optimizations for production builds.
Uses --with-icc if built with Intel compilers.
2018-03-25 09:10:40 +02:00
健美猫
8890dbe3d9 Add a new packag: sofa-c. (#7470) 2018-03-24 20:51:02 +01:00
Todd Gamblin
54f97d1dec
Update copyright on LLNL files for 2018. (#7592) 2018-03-24 12:13:52 -07:00
健美猫
756cb4e6d7 Add a new package: graph500. (#7499)
* Add a new package: graph500.

* Remove leading comments.

* graph500 is a MakefilePackage.

* Update.

* Update.
2018-03-24 11:48:31 -05:00
Adam J. Stewart
5b810579fa
Only add python flag for newer versions of glib (#7579) 2018-03-23 15:35:09 -05:00
Jon Rood
04358f827f Adding bc and ed packages. (#7578)
* Adding bc package.

* Adding ed package which is actually a dependency of bc.
2018-03-23 15:24:35 -05:00
xfzhao
9799e6062d beast1: new package (#7544)
* beast1: new package

* beast1: taking suggestion
2018-03-23 15:19:26 -05:00
healther
1391f0db44 add matplotlib version 2.2.2 (#7572) 2018-03-23 14:40:18 +01:00
Denis Davydov
adf972e7ff intel performance libraries: add 2018.2 (#7569) 2018-03-23 13:49:59 +01:00
Federico Ficarelli
213a3de539 Fix tclsh command for transitive dependencies (#7566) 2018-03-23 10:05:54 +01:00
Alfredo Adolfo Gimenez
a37acfc1e9 Dyninst links broken, everything switched to github (#6066) 2018-03-22 20:29:17 -05:00
Matthias Diener
a0494003a2 mc: create new package (#7564)
* mc: new package

* Update package.py

* Update package.py

* Update package.py
2018-03-22 19:48:48 -05:00
Veselin Dobrev
3858d4a3a3 [hypre] add the 'headers' property (#7278)
* [hypre] Add the 'headers' property plus a small tweak in the 'libs'
property.

* [hypre] Add fallbacks for searching for '.libs' in 'prefix.lib64' and
in all of 'prefix'.

* [hypre] Fix style.

* [hypre] Use find_headers instead of find + HeaderList.
2018-03-22 19:43:23 -05:00
jthies
2e4378bcd0 added a new package file for PHIST (Pipelined, Hybrid-parallel Iterat… (#7361)
* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)

* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"

* packages/phist: fix some more flake8 errors

* add headers  property to netlib-lapack and intel-mkl

* ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())

* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)

* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"

* packages/phist: fix some more flake8 errors

* phist: use headers property to find lapacke include dir

* phist: fix flake8 error

* phist: be more specific about dependencies and update version

* phist: state trilinos minimum version when building with Tpetra kernels

* gmp: add oldish version 5.1.3 with checksum

* phist: get rid of the 'petsc+complex' variant, it can be installed by kernel_lib=petsc ^petsc+complex

* phist: new version

* phist: fix version checksum

* Revert "add headers  property to netlib-lapack and intel-mkl"

This reverts commit d8cb62905ebfb2cba186fd2d736d54a88a49d089.

* Revert "ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())"

This reverts commit d406a77ed7879c124fbaf1d757d002b9f0771620.

* phist: remove unused function

* phist: reorder package file versions/variants/depends_on/rest

* phist: some minor changes requested by @adamjsteward
2018-03-22 19:42:38 -05:00
Eric
9a3a9860df perl-json: Create new package (#7431) 2018-03-22 19:41:50 -05:00
Adam J. Stewart
666341599c
Add py-cvxopt package (#7527)
* Add py-cvxopt package

* Flake8 fixes
2018-03-22 19:38:46 -05:00
Adam J. Stewart
1f23693877
Fix giflib unit tests on macOS/BSD (#7519)
* Fix giflib unit tests on macOS/BSD

* Unit tests occasionally fail when run in parallel
2018-03-22 19:38:17 -05:00
Adam J. Stewart
32a78eae73
Add latest version of MPFR and patches for older versions (#7545)
* Add latest version of MPFR and patches for older versions

* Fetch and checksum patches instead of storing them

* Fix bug, version attribute was being overridden
2018-03-22 19:37:01 -05:00
Sinan
8d4ef999d7 package/py-pyutilib: create new package (#7555) 2018-03-22 21:49:07 +01:00
Gregory Lee
be3f08d0de llvm+python+lldb depends on py-six for versions 5 and up (#7056) 2018-03-22 15:42:41 -05:00
Massimiliano Culpo
0d7652c508 Used names with __ in class level constructs to avoid rebinding (#7563)
fixes #3129
2018-03-22 15:41:55 -05:00
Adam J. Stewart
06e1fdb237 Add latest version of MPC (#7546) 2018-03-22 21:10:58 +01:00
Adam J. Stewart
9c0fb6ccee Add latest version of ISL (#7547) 2018-03-22 21:09:43 +01:00
Sinan
5e7fc91d8a add versions 1.9.6 1.9.7 (#7562) 2018-03-22 21:07:34 +01:00
Levi Baber
c8a8079c34 meme: fix errors (#6736)
* meme: added perl-xml-parser dependency, resolved issue. still need to fix ghostscript or image-magick, conversion not working.

* meme: fixed issue with libxslt/libxml2 conflict, and added imagemagick support

* meme: removing libxslt/libxml2 dependency lines

* meme: configure args

* meme: separating configure args

* meme: removing a comment, and hoping for travis to rebuild. site seems back up.

* meme: make image-magick optional

* meme: add comment referencing PR

* meme: bah flake8
2018-03-22 12:06:24 -05:00
Federico Ficarelli
9280eba214 tcl-tclxml: new package (#7557) 2018-03-22 07:36:59 -05:00
Adam J. Stewart
aa84ddffed
Add latest version of eigen (#7530)
* Add latest version of eigen

* Fix bug in ptscotch detection
2018-03-22 07:25:26 -05:00
Federico Ficarelli
e71681458b tcl-tcllib: new package (#7481) 2018-03-22 06:35:37 +01:00
Michael Sternberg
726c7e0f06 Opt avx (#7486)
* Promote to Autotools for simplicity; broaden Intel CPU opt targeting from SSE4.2 to AVX2

* make Intel CPU opt targeting same as in ../libxc

* flake8 W291

* use canonical means to pass (ahem) the test phase, h/t @adamjstewart

* revert f25d598 (unrelated merge)

* re-merge
2018-03-21 19:53:19 -05:00
Leonhard Reichenbach
973a131dac Add latest versions of bazel (#7542)
* Add latest versions of bazel

* Added java as dependency to run bazel
2018-03-21 19:52:28 -05:00
Eric Müller
f5afc98cc2 libXi requires pkgconfig and fixesproto (#7480) 2018-03-21 19:51:58 -05:00
Levi Baber
b0ecd0fd0b py-pybedtools: fix hash for 0.6.9 (#7492) 2018-03-21 19:51:34 -05:00
Levi Baber
383c2aa2d6 Singularity: new version (#7551)
* singularity: new version

* singularity: hash
2018-03-21 19:50:53 -05:00
Eric
81dcd1b33a perl-module-implementation: Create new package (#7549) 2018-03-21 17:16:24 -05:00
Julien Adam
a81ebfc2ba New Package: jchronoss (#7207)
* New Package: jchronoss

* jchronoss: Fix flake8 errors

* jchronoss: Fix according to recommendations

* jchronoss: Remove FIXME

* jchronoss: Fix another flake8 error
2018-03-21 16:56:20 -05:00
lingnanyuan
a2b885d0ba r-dirichletmultinomial: Create new package. (#7227)
* r-dirichletmultinomial: Create new package.

* Change description.

* Change description.
2018-03-21 16:55:35 -05:00