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Author SHA1 Message Date
Jean-Paul Pelteret
d3daa829f0 Added symengine and associated packages (#1885) 
Symengine and associated packages
 2016-10-07 22:45:24 -07:00
Todd Gamblin
dbc864c9db Restore default RPATH settings but allow packages to limit to immediate deps. (#1954) 
- Some packages (netcdf) NEED RPATHs for transitive deps.
- Others (dealii) will exceed OS limits when the DAG is too large.
 2016-10-06 15:57:23 -07:00
Denis Davydov
9683e0df07 atlas: add 3.10.3 (#1952) 2016-10-06 15:23:18 -07:00
Joseph Ciurej
82fcc5e1de Feature Proposal : Make All Python Extensions User Configuration Independent (#1435) 
* Updated all Python extension packages to use 'setup_py' on install.

* Fixed a few minor style issues with the updated Python packages.
 2016-10-06 14:43:49 -07:00
Sergey Kosukhin
ebef9628a3 Update gmp: fixed an issue with intel compiler. (#1898) 2016-10-06 12:49:03 -07:00
Jay
6e9353f1a8 Updated nettle to have m4 as an immediate dependency (#1946) 
* Updated nettle to have m4 as an immediate dependency to match new PATH
construction logic which only includes immediate dependencies.

* Update package.py
 2016-10-06 11:50:50 -07:00
James Wynne III
7dc11472bf Sqlite ppc64le configure build guess fix (#1684) 
* Added check for ppc64le because configure cant guess the build type for rhel on ppc64le

Expand/clarify description of dependency types

Refactored getting the arch so that its less verbose

* Fixed flake8 issues
 2016-10-06 02:48:05 -07:00
Sergey Kosukhin
92ca6d6423 Update pixman: mmx is disabled only for MacOS. (#1896) 2016-10-06 02:43:34 -07:00
Sergey Kosukhin
4cce23ea89 Update libtiff: updated homepage and fetch urls. (#1895) 
* Update libtiff: updated homepage and fetch urls.

* Update libtiff: new version 4.0.6.
 2016-10-06 02:43:23 -07:00
Elizabeth Fischer
264604df3e cgal: build out of source. (#1918) 
* cgal: build out of source.

* Simplify cmake out-of-source.
 2016-10-06 02:36:27 -07:00
Jeffrey Salmond
a648dc6b33 add python options to vtk package (#1931) 2016-10-06 02:29:25 -07:00
Elizabeth Fischer
2966f174ae mumps: Add alternate download location (in comments) (#1919) 2016-10-05 23:15:38 -07:00
Adam J. Stewart
6ee020cea4 Add package for CONVERGE CFD (#1905) 2016-10-05 10:37:50 -07:00
Adam J. Stewart
95b07c365c Add latest versions, resolve variant resolution bug (#1909) 2016-10-05 10:37:35 -07:00
Elizabeth Fischer
42c69b3809 everytrace: New package (#1543) 
* everytrace: New package

Everytrace ensures that stack trace is obtained every time a program exits, for whatever reason.

* everytrace: Change CMake to build dependency

* Renamed to everytrace-example, flake8 and copyright issues.

* flake8

* Missing type=build
 2016-10-05 10:03:05 -07:00
Adam J. Stewart
d5e5e4ed1a Add missing dependencies for Flake8 (#1883) 
* Warn user if flake8 can't find setuptools

* Add missing dependencies of flake8

* Updates to py-autopep8, make packages activateable

* Check for presence of setuptools for Sphinx too

* Fix bug in order of commands
 2016-10-05 10:00:31 -07:00
Elizabeth Fischer
42a60b2434 Added copyright and build deps specification; should be ready to merge. 2016-10-05 12:14:08 -04:00
Axel Huebl
ac3e21f8d4 PNGwriter, libSplash: Add master version (#1744) 
* PNGwriter, libSplash: Add `master` version

* PNGwriter, libSplash: Add `dev` versions

Can be used for now, `develop` is currently discouraged.
 2016-10-05 06:46:20 -07:00
Denis Davydov
4e5d340665 boost: set 1.61 as preffered until 1.62 is fixed (#1908) 2016-10-05 05:16:06 -07:00
alalazo
7a26c60dbd Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase 
Conflicts:
	lib/spack/spack/cmd/setup.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/gmp/package.py
 2016-10-05 09:33:59 +02:00
Pramod Kumbhar
9daafc32f1 Packages for Darshan I/O performance characterization tool from ANL (#1900) 2016-10-04 14:40:35 -07:00
Adam J. Stewart
7806fded3e Update documentation URL after switch to readthedocs (#1901) 2016-10-04 11:47:25 -07:00
Sergey Kosukhin
1d981ebd50 A set of tools used in climate modeling and numerical weather prediction. (#1317) 
* Update grib-api: switched to cmake building system.

* Update harfbuzz: added pkg-config dependency.

* Update pango: added pkg-config dependency.

* Add libemos package.

* Add Magics (from ECMWF) package.

* Revert "Variant for building cdo without mpi (#1638)":
CDO does not use MPI.

This reverts commit 079d063c6d.

* Update CDO package: full featured implementation.

* Update magics: added python as build dependency.

* Update cdo: added disabling configuration options.
 2016-10-04 09:29:22 -07:00
Ivo Jimenez
d36028cff4 Adds mpip package (#1886) 2016-10-04 01:30:52 -07:00
Ivo Jimenez
2c701d372e Adds lulesh package (#1887) 2016-10-04 01:28:23 -07:00
Pramod Kumbhar
e546d6246f Spack package for HPCToolkit (#1892) 
* Spack package for HPCToolkit (performance analysis tool)

* Correction for PR comments, make flake8 happy

* update note / comments
 2016-10-04 01:02:50 -07:00
Massimiliano Culpo
50fcade81b cp2k : added support for libint, fixed compilation issues on elpa (#1889) 2016-10-03 08:25:36 -07:00
Geoffrey Oxberry
df79ba0dcf gcc: fix darwin dispatch/object.h header issue (#1518) 
Fixes #1203. Apple ships headers in Yosemite (and possibly earlier) that
are gcc-incompatible, but compile fine with clang. The fix is to copy
the offending system header from /usr/include/${REST_OF_HEADER_PATH} to
${GCC_PREFIX}/include/${REST_OF_HEADER_PATH} and replace the non-gcc-
compatible features with gcc-compatible equivalents.

See https://github.com/hashdist/hashstack/pull/771/files for
inspiration, and
http://hamelot.io/programming/osx-gcc-dispatch_block_t-has-not-been-declared-invalid-typedef/
for a description of the header issue.
 2016-10-02 18:54:43 -07:00
Nicolas Richart
16f99bd0b2 Adding latest version of fenics (#1528) 
* Adding last version of fenics and making trilinos not ambiguous on hdf5

* forcing fenics to ignore hdf5 cxx

* Adding deptypes and correcting the hdf5 patch

* flake8 corrections

* cleaning some useless code
 2016-10-02 18:51:34 -07:00
Kelly Thompson
621a4d637d Provide newer versions of llvm (3.8.1, 3.9.0) (#1765) 
* Provide new versions of llvm.

+ Provide file list and md5 hashes for 3.8.1 and 3.9.0.
+ Clean up indentation for the 'releases' data structure to improve
  consistency.

* Adding a block of code to the 'resources' structure for cfe.

* Merge cfe and clang resources into single entity.
 2016-10-02 18:50:42 -07:00
Alfredo Adolfo Gimenez
1ea9582218 Added hadoop, spark, and variant spark+hadoop (#1833) 
* Added hadoop, spark, and variant spark+hadoop

* Docstrings, dependency types, urls, copyright

* Flake8 fixes, link dependency for hadoop

* Build type for spark, env problem setting JAVA_HOME
 2016-10-02 18:49:30 -07:00
Erik Schnetter
b22956bab2 git: Don't link against -lrt on Darwin (#1877) 
There is no librt on Darwin, and it's not necessary either.
 2016-10-02 18:37:45 -07:00
Erik Schnetter
28b48f3e1a Update PAPI to 5.5.0 (#1878) 2016-10-02 18:37:26 -07:00
Erik Schnetter
b2ff9dbcd4 Update tmux to 2.3.0 (#1879) 2016-10-02 18:37:17 -07:00
Kelly Thompson
051c5dbc27 New package: libquo (#1880) 
* New package: libquo

libquo is a high-level, easy to use programming interface tailored specifically
for MPI/MPI+X codes that may benefit from evolving process binding policies
during their execution. QUO allows for arbitrary process binding policies to
be enacted and reverted during the execution of an MPI/MPI+X application as
different computational phases are entered and exited, respectively.

https://github.com/losalamos/libquo

* Remove use of 'which' and fix style non-conformance.
 2016-10-02 18:36:48 -07:00
Bruno Turcksin
e854e053e4 Add boost 1.62.0 (#1882) 2016-10-02 18:36:31 -07:00
Jean-Paul Pelteret
c86d4c8920 Added bash-completion package (#951) 2016-10-02 17:50:39 -07:00
Pramod Kumbhar
4b34ba1035 pdt url change to download full installer tarball (#1881) 2016-09-30 14:31:28 -07:00
Pramod Kumbhar
6c627dbac9 Add cube variant for building GUI component with qt, parallel built supported (#1525) 2016-09-29 15:37:35 -04:00
Pramod Kumbhar
6ec46ca802 updated to latest available package and fixed installation issue (old packages are no longer available for download) (#1523) 2016-09-29 15:37:07 -04:00
Mitchell Devlin
86cad961e5 added libxstream (#1454) 2016-09-29 15:36:37 -04:00
Adam J. Stewart
deb1cb4805 Add libint package (#1264) 
* Add libint package

* Add Intel optimization flags recommended by CP2K

* Add new version and Intel compiler optimization flags for libxc

* Add older version of libint

* Libint depends on GMP C++ library
 2016-09-29 15:35:10 -04:00
Robert D. French
a77b48f491 Library for manipulating grib1 and grib2 files (#1736) 
Pro tips from @adamjstewart:
* line too long in package description
* name it grib-api instead of grib_api
* depend on netcdf without reference to unnecessary constraints
 2016-09-28 17:02:29 -04:00
Elizabeth Fischer
3352889d73 py-pil: Protect against building with Python3. (#1868) 
* py-pil: Does not build with Python3.

* Set py-pillow to be the default pil provider

* Update package.py

* Change to comments requested by adamjstewart

* Remove version constraint from extends(), avoid a Spack bug.
 2016-09-28 16:51:41 -04:00
Erik Schnetter
4040792501 Update Qthreads to 1.11 (#1863) 2016-09-28 15:22:02 -04:00
Todd Gamblin
295742e2b5 Fixes #1860. Subversion builds sequentially due to race. 2016-09-28 15:18:52 -04:00
Robert D. French
fea0a74bec vim8 is out! (#1753) 
* depends on ncurses for 8.0 or higher
 2016-09-28 15:17:15 -04:00
Adam J. Stewart
66c2ac0bc9 Tell Mercurial where to find CA certs (#1873) 2016-09-28 14:58:51 -04:00
Adam J. Stewart
9b575dd976 Various updates to scipy and numpy (#1856) 2016-09-27 10:56:24 -04:00
Michael Kuhn
00b3aa77ae Update cdo to 1.7.2 (#1858) 2016-09-27 10:56:04 -04:00
Erik Schnetter
88af9f783d Make PETSc build on Darwin (#1835) 
Don't set cpp when building on Darwin.
 2016-09-26 10:38:02 -07:00
Erik Schnetter
3282eaea8d Update OpenSSL (#1853) 2016-09-26 10:37:40 -07:00
Denis Davydov
1e10309ff7 some fixes to blas/lapack usage in packages (#1852) 
* atlas: fix unit test

* openblas: remove symlinks; use lapack_libs.ld_flags in the test

* mkl: fix openmp variant of blas/lapack libs

* intel-parallel-studio: fix openmp variant of blas/lapack libs

* netlib-scalapack: fix blas/lapack for multilib case (e.g. mkl)

* arpack-ng: fix blas/lapack for multilib case (e.g. mkl)

* petsc: explicitly specify blas/lapack

* minor

* cantera: fix blas/lapack usage

* ipopt: fix blas/lapack usage

* netlib-lapack: fix external blas usage

* mfem: fix lapack/blas usage

* superlu-mt: fix blas usage

* flake8 fixes
 2016-09-26 10:37:23 -07:00
Todd Gamblin
cb36aadaf6 Fix doc bugs, widen columns in the package list 2016-09-23 18:07:33 -07:00
Patrick Gartung
ec91152a36 a few package used in HEP including ROOT6 2016-09-23 18:07:22 -07:00
Adam J. Stewart
64194a823a Remove duplicate ICU package (#1837) 
* Remove duplicate ICU package

* Ignore deleted files during flake8 tests

* Rename Boost ICU variant
 2016-09-23 14:16:59 -07:00
Denis Davydov
6ef6428331 m4: fix compilation on Sierra with GCC (#1844) 
* m4: fix compilation on Sierra with GCC

* m4: check macOS version
 2016-09-23 13:38:29 -07:00
Bruno Turcksin
98d54182d3 Add Trilinos 12.8.1 (#1843) 2016-09-23 13:36:21 -07:00
Erik Schnetter
73ec2a27d0 Don't require git for Julia @0.5: (#1834) 2016-09-23 13:35:12 -07:00
Erik Schnetter
8147a09489 Update jemalloc to 4.2.1 (#1839) 2016-09-23 13:32:57 -07:00
Robert D. French
3d282b9239 Add libmesh, needed for some FEM applications (#1846) 2016-09-23 13:26:27 -07:00
Denis Davydov
df5e151049 hypre: fix a bug with blas/lapack names (#1841) 2016-09-23 10:06:18 -07:00
Erik Schnetter
c0ebbc97c9 Update OpenSSL (#1836) 
This is a security update with priority "HIGH".
 2016-09-23 08:21:15 -07:00
Denis Davydov
462a4a1353 boost: fix a bug which broke it on macOS with clang+gfortran (#1816) 
* dealii: add missing python dependency

* boost: fix a bug which  broke it on macOS with clang+gfortran

Boost was using gcc compiler instead of clang++, which lead to
cryptic Undefined symbols linking errors for boost::python::objects::function_object()
when building other packages against boost+python.

* boost: add exceptions for intel

* boost: use spack_cxx
 2016-09-22 13:47:22 -07:00
Adam J. Stewart
a638b62ab1 Updates to CGAL and ICU4C packages (#1828) 2016-09-22 11:50:50 -07:00
Elizabeth Fischer
64c3b11478 suitesparse: Added +fpic (for linking with shared libraries) (#1542) 2016-09-22 11:03:49 -07:00
Erik Schnetter
7ad6c35627 New package "charm" for the Charm++ parallel programming framework (#1766) 2016-09-22 00:48:00 -07:00
Massimiliano Culpo
d848559f70 Reworking of lapack_shared_libs and similar properties (#1682) 
* Turned <provider>_libs into an iterable

Modifications :
- added class LibraryList + unit tests
- added convenience functions `find_libraries` and `dedupe`
- modifed non Intel blas/lapack providers
- modified packages using blas_shared_libs and similar functions

* atlas : added pthread variant

* intel packages : added lapack_libs and blas_libs

* find_library_path : removed unused function

* PR review : fixed last issues

* LibraryList : added test on __add__ return type

* LibraryList : added __radd__ fixed unit tests

fix : failing unit tests due to missing `self`

* cp2k and dependecies : fixed blas-lapack related statements in package.py
 2016-09-21 12:27:59 -07:00
Todd Gamblin
6b6f868f2a Flake8 fixes. 2016-09-21 04:35:15 -07:00
Todd Gamblin
786ab114b7 Merge branch 'qt-osx' of git://github.com/mathstuf/spack into mathstuf-qt-osx 2016-09-21 04:32:03 -07:00
George Hartzell
51d869493a Add package for bedtools2 (#1572) 
Add package for bedtools2, with support for v2.25.0 and v2.26.0.
 2016-09-21 04:23:03 -07:00
George Hartzell
db0baaafe3 Add package for bamtools (#1571) 
bamtools provides a C++ API & command-line toolkit for working with BAM
data.
 2016-09-21 04:22:55 -07:00
Mayeul d'Avezac
3d1c92e22c Update espresso recipe to track change in spack internals (#1734) 2016-09-21 04:18:35 -07:00
Adam J. Stewart
cf925ddc97 Add missing build dependencies to hdf package (#1812) 2016-09-21 04:16:57 -07:00
Kelly Thompson
3d3614e522 Update to allow netlib-scalapack to build against netlib-lapack. (#1539) 2016-09-21 04:10:30 -07:00
Glenn Johnson
c1284a9046 Stop python from linking with system ncurses (#1672) 
Python will look to link with libncursesw in preference to libncurses. Since
ncurses in spack is built without suffixes there is no libncursesw and
python will link to the system libncursesw for _curses.so and
_curses_panel.so, as well as libpanelw for _curses_panel.so.

This PR introduces a patch that simple removes the check for ncursesw in
setup.py and therefore sets `curses_library` to `ncurses`.
 2016-09-21 04:02:28 -07:00
Glenn Johnson
851b58248d Build pkg-config files for ncurses (#1673) 2016-09-21 04:02:07 -07:00
Glenn Johnson
73012ec4c8 Rework libgd package (#1679) 
* Added missing libtiff dependency
* added dependency on fontconfig
* Added version 2.2.3
* use autotools rather than cmake

The cmake build was not producing a complete install.
* There was no versioning of the installed libraries.
* gdlib-config was missing
* pkgconfig directory was missing

These problems do not happen when built with autotools.
 2016-09-21 01:56:20 -07:00
Todd Gamblin
ae6252ca5f Merge branch 'efischer/160914-FixBinutils226Question' of git://github.com/citibeth/spack into bugfix/efischer-160914-FixBinutils226Question 2016-09-21 01:45:38 -07:00
Axel Huebl
d3e04b3daf Close #1683 Apply ADIOS 1.10.0 Patch (HDF5 1.10+) (#1699) 
* Close #1683 Apply ADIOS 1.10.0 Patch

Also correct version dependencies and comments.

* Clean Up ADIOS

- add develop
- simplify HDF5 options (parallel only)
- remove optional netCDF (not fully v4)
 2016-09-21 00:55:54 -07:00
Massimiliano Culpo
3254d2f8f9 cp2k : added dependencies (#1724) 
* wannier90 : added package (#24)

* wannier90 : added package

* cp2k : added dependency on wannier90

* elpa : updated package, added cp2k dependency (#26)

Conflicts:
	var/spack/repos/builtin/packages/elpa/package.py
 2016-09-21 00:53:06 -07:00
Alfredo Adolfo Gimenez
02307cf7ce Set JAVA_HOME on module load and on dependent installs. (#1716) 
* Set JAVA_HOME on module load and on dependent installs.

* Include environment setup from dependencies in dependee module (#1714)
 2016-09-21 00:52:09 -07:00
Massimiliano Culpo
1cc48bf7d7 grackle : added package (#1725) 
Modifications :

* grackle : added package
* grackle : added version 2.2
 2016-09-21 00:51:49 -07:00
Erik Schnetter
3c7ea3000a Wrap yt package (#1751) 
yt is a python package for analyzing and visualizing volumetric, multi-resolution data from astrophysical simulations, radio telescopes, and a burgeoning interdisciplinary community.
 2016-09-21 00:37:46 -07:00
Sergey Kosukhin
746495896c Qt library: added variant to enable/disable compilation of examples (#1763) 2016-09-21 00:25:14 -07:00
Patrick Gartung
e6dc448f18 Compiling python with gnu c++ on macos fails with toolboxglue enabled. 2016-09-20 23:34:15 -07:00
Gregory L. Lee
25ee9456f5 added STAT release 3.0.0 2016-09-20 16:09:31 -07:00
Erik Schnetter
ef1f441424 Julia: Add version 0.5.0 (#1809) 2016-09-20 12:40:58 -07:00
Adam J. Stewart
db483e77e4 Remove url_for_version as it breaks spack info (#1503) 2016-09-20 10:17:51 -07:00
Joseph Ciurej
7f9e89eb53 Update Package: Git-LFS (#1769) 
* Fixed a few small bugs in the 'git-lfs' install script.

* Fixed a bug in the '(go|go-bootstrap)@1.4.2+test' install scripts.

* Fixing a minor style issue in the 'git-lfs' install script.
 2016-09-20 10:08:25 -07:00
Erik Schnetter
00bac8f294 PETSc: Explicitly point to cpp when configuring (#1807) 
I encountered an HPC system where PETSc's configure stage does not find a valid `cpp` (C preprocessor). Explicitly pointing to Spack's `cpp` wrapper resolves the problem.
 2016-09-20 10:05:57 -07:00
Adam J. Stewart
f180d748be Remove lingering boilerplate FIXMEs (#1756) 2016-09-20 08:01:55 -07:00
Joseph Ciurej
2cbae1d691 Update Package: Metis (#1783) 
* Fixed a bug that was causing post-install METIS tests to fail.

* Improved the patching procedure used in the 'metis' install script.

* Enabled patch skipping for the 'metis' and 'parmetis' packages.

* Fixed some minor style issues in the 'parmetis' package.

* Improved the 'metis' test fix and added 'run_tests' support.
 2016-09-20 02:48:31 -07:00
Robert D. French
5c11fe88df Add UberFTP utility (#1780) 2016-09-20 02:47:10 -07:00
Denis Davydov
1565a643bd dealii: add 8.4.2 (#1782) 2016-09-20 02:46:57 -07:00
Bruno Turcksin
20fcd3f1dd Add Python support to gdb. (#1790) 2016-09-20 02:46:30 -07:00
Joseph Ciurej
e73a7c80bf Update Package : Zoltan (#1793) 
* Refactored and reorganized the 'zoltan' install script.

* Fixed a few bugs with the '+mpi' and '+fortan' variants of 'zoltan'.

* Reintroduced and improved the '+shared' variant for the 'zoltan' package.

* Improved compatibility with different MPI providers for 'zoltan'.
 2016-09-20 02:46:13 -07:00
Tom Merrick
d71f8dcab5 samtools could not find the ncurses library (#1785) 2016-09-20 02:27:19 -07:00
Massimiliano Culpo
ea446c0f0e lmod : added support for the creation of hierarchical lua module files (#1723) 
Includes :
- treatment of a generic hierarchy (i.e. lapack + mpi + compiler)
- possibility to specify which compilers are to be considered Core
- correct treatment of the 'family' directive
- unit tests for most new features
 2016-09-20 02:26:25 -07:00
Erik Schnetter
bd6aac3102 Update Julia to 0.4.7 (#1805) 2016-09-20 02:16:25 -07:00
Erik Schnetter
bddb15ef4c Make VisIt build again (#1762) 
- add new version 2.10.3
- explicitly require hdf5 variant ~mpi, since we don't know how to build with mpicc
- explicitly disable glew since it may not be installed
 2016-09-20 02:15:58 -07:00
Erik Schnetter
70424b511e Work around cmake problems in VTK (#1761) 
The cmake scripts can't handle the semicolons in gcc's version output. Filter them out before detecting the version.
 2016-09-20 02:15:37 -07:00
Erik Schnetter
2a558e9d7a Tighten HDF5 version requirements for Silo (#1760) 2016-09-20 02:14:55 -07:00
Erik Schnetter
8426b65592 Make cmake @2.8 build again (#1759) 2016-09-20 02:14:37 -07:00
Erik Schnetter
140f1773cf Update hwloc to 1.11.4 (#1752) 2016-09-20 02:14:17 -07:00
Erik Schnetter
682ac5194e Declare py-beautifulsoup4's dependency on py-setuptools (#1748) 2016-09-20 02:14:06 -07:00
Erik Schnetter
48c87da07b Update curl to 7.50.3 (#1747) 
* Update curl to 7.50.2
* Update curl to 7.50.3
 2016-09-20 02:13:54 -07:00
Erik Schnetter
bbdc429db3 Update OpenMPI to 2.0.1 (#1721) 2016-09-20 02:13:40 -07:00
Erik Schnetter
2e490050f6 Update OpenBLAS to 0.2.19 (#1702) 2016-09-20 02:13:25 -07:00
Erik Schnetter
ebde2a101e Reorder versions in openssl (#1601) 2016-09-20 02:13:14 -07:00
Erik Schnetter
ee2ddaa7cc Update mbedtls to 2.3.0 (#1600) 2016-09-20 02:13:03 -07:00
Erik Schnetter
6848752fed Update cereal to 1.2.1 (#1599) 2016-09-20 02:12:52 -07:00
Erik Schnetter
dfad4a0abc Update binutils to 2.27 (#1598) 2016-09-20 02:12:40 -07:00
Michael Kuhn
7fd44a983d Update mvapich2 to 2.2 (#1775) 2016-09-15 10:42:57 +08:00
Elizabeth Fischer
2a823fbdfd [RtM] Added py-proj/package.py (RtM = Ready to Merge) (#717) 
* Added py-proj package

* Added bug-fix patched version to the package.

* Removed dependency of py-proj on proj.

* py-proj: Added missing dependency

* py-proj: Removed versions from forked repos, now that necessary bug fixes have been merged into the main repo.

* Update package.py

Added a blank line that Travis wanted.

* 1. Added copyright
2. Used setup_py
3. Added type='build' for dependencies.
 2016-09-15 10:35:57 +08:00
Elizabeth Fischer
a954d0976a Put back full-length URL. 2016-09-14 16:52:33 -04:00
Elizabeth Fischer
595ec7e034 Bug fix capturing which packages work with which binutils. 2016-09-14 16:50:17 -04:00
Elizabeth Fischer
4a1df7e0b2 Resolved issues of py-pillow, py-scipy and binutils dependencies. Resolves #1506 
py-pillow: Remove version dependency on binutils@2.25.  In tests, it works just fine with binutils@2.26.

Fixed flake8 issues.
 2016-09-14 10:56:08 -04:00
Erik Schnetter
1d09d1a4e2 Update netlib-lapack to 3.6.1 (#1597) 2016-09-09 13:50:37 -07:00
Erik Schnetter
567d67fae2 Add libiconv dependency for git (#1468) 
Also remove "--without-pcre" flag that git does not understand any more.
 2016-09-09 12:57:49 -07:00
Erik Schnetter
8249108cc6 Qthreads: Switch back to using tarball to get released version (#1739) 
* Qthreads: Switch back to using tarball for download

* Don't require autotools any more

* Re-enable autotools

* Remove autotools again

* Use .tar.bz tarball; remove outdated code
 2016-09-09 06:56:11 -07:00
Erik Schnetter
e06a0271a4 New package h5hut (#1737) 
* New package h5hut -- High-Performance I/O Library for Particle-based Simulations

* Set up MPI compilers

* Add version 1.8.12 to HDF5

* Correct Sphinx error
 2016-09-08 13:27:47 -07:00
Erik Schnetter
ff7c0335ff Declare fontconfig dependency on pkg-config (#1686) 2016-09-08 12:15:42 -07:00
Todd Gamblin
3d3d65f3f7 Merge pull request #1553 from adamjstewart/fixes/netcdf-hdf5 
Fix NetCDF/HDF5 dependency resolution problems
 2016-09-08 11:58:46 -07:00
Adam J. Stewart
0586b388df Add latest version of libpng, ncview depends on libpng (#1502) 
* Add latest version of libpng

* ncview depends on libpng
 2016-09-08 09:02:10 -07:00
Ben Boeckel
77611913c6 qt: only pass -qt-xcb on non-OS X 2016-09-06 16:53:38 -04:00
Ben Boeckel
112122bc28 qt: progress on qt5.5 on osx 
Qt5.5 searches for the SDK itself and just ignores environment variables
like CC and CXX, skipping the spack wrappers.
 2016-09-06 16:01:16 -04:00
Ben Boeckel
fca26c0b79 qt: make -no-phonon specific to qt4 2016-09-06 16:00:22 -04:00
Ben Boeckel
67462ca65a qt: fix pcre header conflict in javascriptcore 2016-09-06 16:00:21 -04:00
Ben Boeckel
4687860885 qt: force the 10.9 SDK on macos 
The 10.11 SDK fails to configure.
 2016-09-06 16:00:21 -04:00
Ben Boeckel
a05a6456d5 glib: build on macos 2016-09-06 16:00:21 -04:00
Ben Boeckel
b810a113af pixman: disable mmx 2016-09-06 16:00:21 -04:00
Ben Boeckel
3df1eeccb9 qt: setup the sdk and platform arguments 2016-09-06 16:00:21 -04:00
Ben Boeckel
71c357e485 qt: support building with 10.10+ SDKs 2016-09-06 16:00:21 -04:00
Ben Boeckel
aa9faceb03 qt: disable phonon support 2016-09-06 16:00:21 -04:00
Ben Boeckel
6075abfbdb qt: depend on icu4c 2016-09-06 16:00:21 -04:00
Ben Boeckel
a9bfd88248 qt: depend on OpenSSL 
OS X doesn't come with an OpenSSL supported by Qt4.
 2016-09-06 16:00:21 -04:00
Ben Boeckel
4c566617f7 qt: make libxcb a conditional dependency 
OS X doesn't have X (usually).
 2016-09-06 16:00:21 -04:00
Ben Boeckel
5ba1144515 qt: create a dbus variant 2016-09-06 16:00:20 -04:00
Ben Boeckel
4b471ecc6e qt: support detecting newer SDK paths 2016-09-06 15:59:46 -04:00
Robert D. French
ccfbfcc890 ITS XML Translation Tool (#1728) 2016-09-06 06:56:13 -07:00
Jeffrey Salmond
26d45bc106 fontconfig: add --disable-docs to configure (#1729) 2016-09-06 06:55:58 -07:00
Kelly Thompson
f0192edf0d For OpenMPI v 2+, add a configure option to provide C++ bindings. (#1730) 
+ Starting with version 2.0, OpenMPI no longer provides C++ bindings by default
  (libmpi_cxx.so). Add a configure option to instruct the build to also build
  and install libmpi_cxx.so.
+ This MPI feature is needed by at least one spack package (moab).
 2016-09-06 06:55:37 -07:00
alalazo
d39b666913 plumed : avoid linking with libgslcblas 2016-09-06 11:21:26 +02:00
alalazo
47f6a6d3cf Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase 
Conflicts:
	lib/spack/spack/build_environment.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/astyle/package.py
	var/spack/repos/builtin/packages/lzo/package.py
	var/spack/repos/builtin/packages/openjpeg/package.py
	var/spack/repos/builtin/packages/swiftsim/package.py
 2016-09-04 10:12:52 +02:00
Massimiliano Culpo
497bbb3ae3 added package : pexsi (#1550) 
* pexsi : added package
* cp2k : added pexsi (works for gcc+openmpi with and without plumed)
 2016-09-03 08:13:47 -07:00
becker33
fa310c825d Merge pull request #1704 from eschnett/eschnett/libiconf-gets 
Make libiconv work with C11
 2016-09-02 16:46:40 -07:00
becker33
6de191a926 Merge pull request #1708 from robertdfrench/globus-toolkit 
Globus Toolkit
 2016-09-02 15:31:34 -07:00
becker33
ea6143402f Merge pull request #1715 from alfredo-gimenez/bugfix/vim 
Fix vim package.
 2016-09-02 14:59:14 -07:00
Alfredo Gimenez
19102559f0 Add sbt (scala build tool) package 2016-09-02 14:15:20 -07:00
Alfredo Gimenez
817c120b1c Fix vim package 2016-09-02 14:09:46 -07:00
Erik Schnetter
d78d18c4bd Update OpenMPI description (#1705) 2016-09-02 10:57:35 -07:00
Jeffrey Salmond
5146c64dfc Fixes for the ImageMagick package. (#1709) 
* add pango dependency

* add new package ghostscript-fonts & add to ImageMagick as dependency

also tell ImageMagick's configure where the font dir is!

* refactor to fix flake8

* add homepage to ghostscript-fonts

* use install_tree

* remove unneeded import
 2016-09-02 10:41:35 -07:00
Erik Schnetter
c7bb523c8f Declare qthreads dependency on automake (#1711) 2016-09-02 10:34:07 -07:00
Robert.French
d876d9b778 Globus Toolkit 2016-09-02 16:04:26 +00:00
Erik Schnetter
9ceb3f6b49 Add two famous old versions of autoconf 
These old versions are often used because their immediate successors are incompatible in some way.
 2016-09-02 11:23:33 -04:00
Erik Schnetter
0bd63ce8be Make libiconv work with C11 
C11 does not provide gets() any more, so we cannot reference it
 2016-09-02 10:53:59 -04:00
Todd Gamblin
8d755c010d Merge pull request #1658 from LLNL/features/git-lfs 
Add git-lfs package.
 2016-09-01 11:58:18 -07:00
Erik Schnetter
932cd6fa19 Switch lzo download from https to http 
lzo's download server does not present a valid certificate, so that downloads via https are failing. Spack's MD5 checksum still ensure a safe download.

Closes #1675.
 2016-08-31 12:41:04 -04:00
Adam J. Stewart
1be6267149 Undo changes to trailing triple quotes in docstring 2016-08-30 16:28:55 -05:00
Adam J. Stewart
9b455e9254 Resolve new documentation issues that have cropped up 2016-08-30 15:58:22 -05:00
Adam J. Stewart
a0c8aca3a2 Remove py-mercurial, going with mercurial package instead 2016-08-30 15:35:58 -05:00
Adam J. Stewart
eb56744f4d Fix package docstrings, #1612 2016-08-30 15:29:50 -05:00
Adam J. Stewart
7f9d098c2f Add mercurial package, used as test dependency 2016-08-30 15:21:15 -05:00
Todd Gamblin
7e4c6afd91 Merge pull request #1412 from adamjstewart/features/cmake 
Overhaul of CMake package and compression libraries
 2016-08-30 12:18:56 -07:00
Todd Gamblin
abd1546d86 Merge pull request #1668 from ax3l/topic-pngwriter 
PNGwriter: Add Spack Package
 2016-08-30 10:21:27 -07:00
Axel Huebl
d2d2234def
HDF5 Dependency: Rewrite to Union 
@adamjstewart
```
think you'll find that if you try running something like:
spack spec libsplash ^hdf5@1.8.15
It will complain that libsplash does not depend on hdf5.
This is a bug in Spack's dependency resolution. A workaround
for this is to tell it to always depend on hdf5.
```

@davydden
```
to expand on @adamjstewart comment, spack will make a union
of dependencies,
i.e. hdf5@1.8.6: + hdf5+mpi = hdf5:1.8.6:+mpi, that's why it works.
```

thank you for the hint!
 2016-08-30 17:00:09 +02:00
Axel Huebl
03c4d65af1
PNGwriter: Add Spack Package 
Adds a package for
[PNGwriter](https://github.com/pngwriter/pngwriter/),
a simple high-level C++ png API used in scientific projects.

```
PNGwriter is a very easy to use open source graphics library that
uses PNG as its output format. The interface has been designed to be
as simple and intuitive as possible. It supports plotting and reading
pixels in the RGB (red, green, blue), HSV (hue, saturation,
value/brightness) and CMYK (cyan, magenta, yellow, black) colour
spaces, basic shapes, scaling, bilinear interpolation, full TrueType
antialiased and rotated text support, bezier curves, opening existing
PNG images and more.
```

PNGwriter is a dependency for [PIConGPU](http://picongpu.hzdr.de),
an open-source, many-core, fully-relativistic particle-in-cell code
and further software developed at
[Helmholz-Zentrum Dresden - Rossendorf](https://www.hzdr.de).
 2016-08-30 12:45:53 +02:00
Axel Huebl
3aaa077c9f
libSplash: Add Spack Package 
Adds a package for
[libSplash](https://github.com/ComputationalRadiationPhysics/libSplash),
a high-level library around serial and parallel HDF5 for regular
grids and particle data sets.

```
libSplash aims at developing a HDF5-based I/O library for HPC
simulations. It is created as an easy-to-use frontend for the
standard HDF5 library with support for MPI processes in a cluster
environment. While the standard HDF5 library provides detailed
low-level control, libSplash simplifies tasks commonly found in
large-scale HPC simulations, such as iter- ative computations
and MPI distributed processes.
```

libSplash is a dependency for [PIConGPU](http://picongpu.hzdr.de),
an open-source, many-core, fully-relativistic particle-in-cell
code and further software developed at
[Helmholz-Zentrum Dresden - Rossendorf](https://www.hzdr.de).

libSplash builds in two versions, one without MPI writing
domain-decomposed posix-style HDF5 files per process and one
(default) with MPI and MPI-I/O ("parallel HDF5") support
aggregating into a single file per MPI communicator.

libSplash is used in conjunction with
[openPMD](http://openPMD.org), see also
[github.com/openPMD/](https://github.com/openPMD/).
 2016-08-30 12:42:39 +02:00
Todd Gamblin
47bf7ecb2b Merge pull request #1652 from ax3l/topic-updateAdios110 
Update ADIOS Package
 2016-08-29 22:59:39 -07:00
Elizabeth Fischer
cf11c32720 libpciaccess: Changed libtool to a build dependency. (#1602) 2016-08-29 22:11:27 -07:00
Axel Huebl
0f40175524
Remove Space, Enable Parallel 
- remove space before comma
- enable parallel build again (seems to work)
 2016-08-30 02:02:48 +02:00
Axel Huebl
ecacce7e07
ADIOS: Use NetCDF Prefix from spec's 2016-08-30 00:51:44 +02:00
Gregory Lee
e32247e53a added qt-creator (#1659) 2016-08-29 15:45:16 -07:00
Axel Huebl
37f489886e
Defaults: MPI=True, Fortran=False 
- ADIOS is mainly a parallel I/O library
- a Fortran compiler is non-standard in a minimal install
 2016-08-30 00:14:29 +02:00
Axel Huebl
b33777fd2f
RM Outdated Comments, Versions & Code 2016-08-29 23:18:31 +02:00
Axel Huebl
88254a14a7
Always External MXML; type='build' 
- always use `mxml` as an external dependency in spack
- declare `build`-only dependencies correctly
 2016-08-29 23:01:20 +02:00
Axel Huebl
e1464ece55
ADIOS: disable parallel make 2016-08-29 19:06:22 +02:00
Robert D. French
a21d3d353b New URL scheme for newer (and older) PDTs (#1651) 2016-08-29 10:01:04 -07:00
Axel Huebl
f2eb1c93df
ADIOS: Run Autotools First 2016-08-29 18:42:07 +02:00
Robert D. French
4095eb2196 Ole' GNU nano; Actually ran flake8 (#1649) 2016-08-29 09:21:19 -07:00
Todd Gamblin
57033a62fa Merge pull request #1563 from adamjstewart/features/sphinx 
Add all Sphinx dependencies
 2016-08-29 09:08:46 -07:00
Axel Huebl
4bd863761a
Update ADIOS Package 
This PR updates the ADIOS package.

**Changes:**

- add latest stable release `1.10.0`
- add previous versions (hashes)
- add default license header
- add build options (shamelessly taken from HDF5 package)
- add validation for excisting FC (as in HDF5) and make optional
- handle mxml dependency correctly (not required in 1.10.0+)
- add `CFLAGS=-fPIC` to build shared (python) libs in ADIOS' lib
- remove `-DMPICH_IGNORE_CXX_SEEK` since it is normally not required
- remove `MPICC/CXX?FC` since `--with-mpi` just performs well
- add transforms:
  - `zlib`: useful (optional) default
  - `szip`: optional (compile often broken)
- add transports that are not as performant as the `.bp` format:
  - `hdf5`: non-default
  - `netcdf`: non-default, close #1610
 2016-08-29 17:16:15 +02:00
Todd Gamblin
31cab4bae2 Merge pull request #1619 from davydden/pkg/nwchem_macos_fix 
nwchem: use basename for CC and FC
 2016-08-29 06:51:14 -07:00
Denis Davydov
66ea42f8d7 nwchem: use basename for CC and FC 2016-08-29 15:15:23 +02:00
Todd Gamblin
f5c9a8c2ee Merge pull request #1650 from davydden/pkg/ape_octopus_comments 
ape octopus: in-code comments
 2016-08-29 06:02:19 -07:00
Denis Davydov
5333a799ea octopus: in-code comments to explain compiler flags 2016-08-29 08:45:28 +02:00
Denis Davydov
90070c317d ape: in-code comments to explain compiler flags 2016-08-29 08:45:15 +02:00
Todd Gamblin
a3f1ae8c4f Merge pull request #1041 from adamjstewart/features/matplotlib 
Matplotlib Python package overhaul
 2016-08-28 21:22:44 -07:00
Abhinav Bhatele
a9a29d207d add versions 2.2rc2 and 2.1 to the mvapich2 package (#1630) 2016-08-28 20:18:57 -07:00
Erik Schnetter
e119c32a9c Hot-fix for qthreads (#1632) 
The download tarball for qthreads vanished. Install it from a git branch instead as temporary work-around.
 2016-08-28 20:18:24 -07:00
Jeffrey Salmond
82808f944a New package: opencoarrays (#1633) 
* opencoarrays: new package

* opencoarrays: remove tests from install due to (unimportant) failures in some configurations

* opencoarrays: fix flake8 errors
 2016-08-28 20:17:22 -07:00
Todd Gamblin
ed365614f4 Add git-lfs package. 2016-08-28 19:27:59 -07:00
Robert D. French
974749aaf6 Provide mpi-less variant for nco (#1643) 2016-08-28 19:15:15 -07:00
Erik Schnetter
6acfcd82b1 Update Julia to 0.5 release branch; install some Julia package as well (#1637) 
* Update Julia to 0.5 release branch; install some Julia package as well

* Add comments, correct flake8 error

* Correct flake8 error
 2016-08-28 17:46:10 -07:00
Robert D. French
079d063c6d Variant for building cdo without mpi (#1638) 2016-08-28 17:43:54 -07:00
Erik Schnetter
db7c3d2de6 New package for the Mercurial (hg) version control system (#1644) 
* New package "mercurial"

* Disable self-checks

The self-checks require subversion, which we don't want to require.
 2016-08-28 17:31:15 -07:00
becker33
e73a1a4ec3 Merge pull request #1558 from mcfadden8/mmcfadden-features/gcc-pic-libraries 
Added variant to gcc package to install PIC versions of libgfortran and libstdc++
 2016-08-25 16:00:00 -07:00
Gregory Lee
77c24d4127 Merge pull request #1379 from LLNL/features/graphlib3 
added stat 3.0 beta and added pygtk and dependent packages
 2016-08-25 09:14:36 -07:00
Todd Gamblin
8170bcfcdd Merge pull request #1574 from ARCCA/plumed-push 
Update plumed package to include optional modules
 2016-08-25 02:45:33 -07:00
Andrew Williams
07e0da24c5 Reverted url to point to tarball rather than git tag 2016-08-25 10:21:56 +01:00
Todd Gamblin
22d2786940 Merge pull request #1580 from davydden/pkg/trilinos_url_fix 
trilinos: switch to github url; fix missing py-numpy dependency
 2016-08-25 02:10:05 -07:00
Kelly (KT) Thompson
2ddaabed25 + Boost: fix recipe for intel compilers. 
This is the same patch provided by PR #550, but rebased against the current
develop branch. It also passes the flake8 checks.
 2016-08-24 15:57:28 -06:00
Todd Gamblin
93cb2db531 Fix build dependency. 2016-08-24 14:10:12 -07:00
Todd Gamblin
a7e568b1d1 Merge branch 'eschnett/sympol' of git://github.com/eschnett/spack into eschnett-eschnett/sympol 2016-08-24 14:05:05 -07:00
Todd Gamblin
19bbe5e421 Merge pull request #1596 from eschnett/eschnett/git-update 
Update git to 2.9.3
 2016-08-24 14:03:04 -07:00
Todd Gamblin
86fe78f5f1 Merge pull request #1582 from eschnett/eschnett/gcc-update 
Update gcc to @6.2.0
 2016-08-24 14:02:54 -07:00
Adam J. Stewart
eace068788 Use self.run_tests for make check 2016-08-24 15:21:23 -05:00
Adam J. Stewart
70bb1f1707 Reduce number of variants, just use system or no-system libs 2016-08-24 14:39:05 -05:00
Todd Gamblin
e6bac6f208 Merge pull request #1613 from eschnett/eschnett/cmake-update 
Update cmake to 3.6.1
 2016-08-24 08:49:33 -07:00
Todd Gamblin
63859bf113 Merge pull request #1575 from davydden/pkg/nwchem 
nwchem: add new package
 2016-08-24 08:49:11 -07:00
Todd Gamblin
5cfa74801f Merge pull request #1565 from adamjstewart/features/fftw 
Add latest version of fftw
 2016-08-24 08:49:00 -07:00
Adam J. Stewart
5970b7a00a Only run tests if explicitly requested 2016-08-24 10:34:20 -05:00
Erik Schnetter
41750ce70d Update cmake to 3.6.1 2016-08-24 10:45:13 -04:00
Denis Davydov
d154f151aa py-cclib: new package 2016-08-24 16:26:35 +02:00
Denis Davydov
6d2d5806b5 nwchem: add python module 2016-08-24 13:40:02 +02:00
Denis Davydov
dae219d5c3 nwchem: add another patch 2016-08-23 22:24:16 +02:00
Denis Davydov
459b6eae11 nwchem: add another patch 2016-08-23 22:15:38 +02:00
Erik Schnetter
3194f2001b Update git to 2.9.3 2016-08-23 15:35:43 -04:00
Erik Schnetter
05f5ba4bf9 Correct flake8 errors 2016-08-23 14:57:29 -04:00
Erik Schnetter
73cae8d9c4 Implement review requests 
- use two empty lines before `class`
- change version numbering scheme for packages, use `url_for_version` to make things work
- specify dependency types
- add comment about temporarily moved download location
- update two packages to newer versions
 2016-08-23 13:52:28 -04:00
Denis Davydov
52ae0ea055 trilinos: use version.dashed 2016-08-23 18:48:17 +02:00
David Beckingsale
243d516bf0 Ensure RAJA builds out-of-source 2016-08-23 08:18:26 -07:00
Denis Davydov
6500ac80e4 nwchem: fix lapack detection 2016-08-23 16:46:40 +02:00
Erik Schnetter
a2692e4ef5 sympol: Add package 2016-08-23 10:41:08 -04:00
Erik Schnetter
bdc825fc3c cddlib: Point download url to a (more reliable) Fedora server 2016-08-23 09:59:56 -04:00
Erik Schnetter
64d3f87e60 Merge branch 'develop' into eschnett/sympol 2016-08-23 09:45:46 -04:00
Denis Davydov
7eb386e55e nwchem: add patches 2016-08-23 14:52:18 +02:00
Denis Davydov
5da9116c06 nwchem: add scalapack; extra steps for 32bit blas/lapack 2016-08-23 11:55:00 +02:00
Denis Davydov
aca8576de4 trilinos: switch to github url; fix missing py-numpy dependency 2016-08-23 10:50:08 +02:00
Todd Gamblin
e81f3daa28 Merge pull request #1519 from mathstuf/fix-deptypes 
Fix deptypes
 2016-08-22 21:40:25 -07:00
Erik Schnetter
7b49166f9b Update gcc to @6.2.0 
Also add some missing older version.
Update download location to original GNU location.
 2016-08-22 20:26:54 -04:00
Denis Davydov
a44beee172 nwchem: add new package 2016-08-23 02:22:44 +02:00
Andrew Williams
65abd279cd Renamed intelmpi as suggested 2016-08-22 13:44:21 +01:00
Andrew Williams
87d15212eb Cleaned branch to only include plumed package 2016-08-22 12:30:17 +01:00
Andrew Williams
226d4f04f3 Spelling tweaks and consistent quoting 2016-08-22 12:09:50 +01:00
Andrew Williams
5661afa315 Passed flake8 tests 2016-08-22 12:03:47 +01:00
Andrew Williams
0c8462723b Found upstream plumed package and modified this one to match 2016-08-22 11:24:03 +01:00
Erik Schnetter
78685addbb hdf5-blosc: Correct download url 2016-08-21 14:39:54 -04:00
Todd Gamblin
55b1182a4c Merge pull request #1554 from eschnett/eschnett/hdf5-blosc 
hdf5-blosc: Remove commit id from version specification
 2016-08-21 09:44:25 -07:00
Adam J. Stewart
d5903e4612 Flake8 2016-08-19 17:06:34 -05:00
Adam J. Stewart
f0f2c6c486 Add latest version of fftw 2016-08-19 17:05:14 -05:00
Gregory L. Lee
a177b9be8a updated stat 3.0.0b url 2016-08-19 13:11:21 -07:00
Adam J. Stewart
835b8f246e py-sphinx requires py-setuptools during runtime 2016-08-19 14:20:31 -05:00
Adam J. Stewart
d7873b5319 Swap lowercase for uppercase in URL 2016-08-19 14:00:50 -05:00
Adam J. Stewart
c1af0d3806 Fix binary conflicts during sphinx activation 2016-08-19 13:54:22 -05:00
Adam J. Stewart
d4e3699510 Add all Sphinx dependencies 2016-08-19 13:44:00 -05:00
Erik Schnetter
466da3afcc Remove commented-out outdated commit id 2016-08-19 11:52:40 -04:00
Andrew Williams
90e5ccd98c Cleaned up commented out code in intelmpi package 2016-08-19 15:01:46 +01:00
Andrew Williams
13f636ec68 Added required arguments to get plumed to build with intelmpi 2016-08-19 15:00:21 +01:00
Adam J. Stewart
28537ae7b7 Workaround until variant forwarding works properly 2016-08-18 14:40:21 -05:00
Stephen Herbein
3445a781eb py-cffi: set LDSHARED env so that rpath is set 
py-cffi's .so was being built without the rpath being set.  distutils
looks at the LDSHARED for which compiler to use to build the final .so.
Since it was not set, distutils fell back to the system provided
compiler.  Setting it forces the shared library to be compiled with the
spack compiler (meaning that the rpath is set correctly).
 2016-08-18 11:32:19 -07:00
Andrew Williams
6641f42417 Not compiling due to mpi error. Also getting this error from the command line so could be separate issue. Otherwise package definition first draft complete. 2016-08-18 13:19:36 +01:00
Erik Schnetter
296212d78d hdf5-blosc: Remove commit id from version specification 
The respective commit seems to have vanished.
Now using the master branch without specifying a particular commit.
 2016-08-17 16:36:33 -04:00
Adam J. Stewart
4d12c5455a Fix NetCDF/HDF5 dependency resolution problems 2016-08-17 13:03:56 -05:00
Marty McFadden
f4ec99ecb4 Added +piclibs variant for building PIC versions of libgfortran.a and libstdc++.a 2016-08-17 09:28:21 -07:00
Andrew Williams
b99e945e6d Added variants and dependencies to plumed but I'm getting an error when trying to resolve mpi to a valid virtual package 2016-08-17 15:43:59 +01:00
Elizabeth Fischer
a733e7e303 py-pathspec: New package 
Related to Python unit testing.
 2016-08-17 00:34:33 -04:00
becker33
7f57405eac Merge pull request #1531 from davydden/pkg/ape 
ape: add new package
 2016-08-16 10:52:27 -07:00
becker33
e8afbfbce7 Merge pull request #1530 from davydden/pkg/octopus 
octopus: new package
 2016-08-16 10:49:41 -07:00
Denis Davydov
5dcc0f7802 ape: add new package 2016-08-16 19:42:32 +02:00
Denis Davydov
9509c10064 octopus: new package 2016-08-16 19:38:38 +02:00
Gregory L. Lee
f182590aae added pkg-config to build deps of cairo and pixman 2016-08-15 15:17:53 -07:00
Gregory L. Lee
54ef9443d3 fix atk url_for_version 2016-08-15 13:51:54 -07:00
Gregory L. Lee
74dd7a36b5 allow parallel build of stat 2016-08-15 13:51:54 -07:00
Gregory L. Lee
749a4e78c7 gobject-introspection requires glib version 2.48.1 2016-08-15 13:51:54 -07:00
Gregory L. Lee
3df208efc0 stat and dependences package updates 2016-08-15 13:51:53 -07:00
Gregory L. Lee
69931996bf added dyninst patches for stat+dysect 2016-08-15 13:51:53 -07:00
Gregory L. Lee
f9cb21e886 flake 8 fixes for dyninst 2016-08-15 13:51:53 -07:00
Gregory L. Lee
0074ecd6fa dyninst package use spec.satisfies instead of @when 2016-08-15 13:51:52 -07:00
Gregory L. Lee
8b94937609 flake 8 fixes for stat and dependents 
flake 8 fixes for dyninst

flake 8 fixes for dyninst

flake 8 fixes for dyninst
 2016-08-15 13:50:39 -07:00
Gregory L. Lee
bd8aab00e4 updated stat and added pygtk and dependent packages 2016-08-15 13:48:58 -07:00
Andrew Williams
27793d97dc temp commit in current state 2016-08-15 16:16:00 +01:00
Ben Boeckel
9ec1c0e18e opencv: make py-numpy a nolink dependency 2016-08-15 10:47:00 -04:00
Ben Boeckel
042666eb7e go: mark git as also being a runtime dependency 2016-08-15 10:46:45 -04:00
Ben Boeckel
826732efec packages: mark builddeps as type='build' 
Less sure about these.
 2016-08-15 10:46:23 -04:00
Ben Boeckel
eb13cbe9bd r-datatable: fix nolink dependency 2016-08-15 10:46:05 -04:00
Ben Boeckel
0d17d90b29 packages: mark builddeps as type='build' 2016-08-15 10:45:19 -04:00
Andrew Williams
3edfa390f7 Basic package file for plumed and boilerplate for external intel mpi 2016-08-15 11:19:40 +01:00
Adam J. Stewart
bc64990bc6 Replace python('setup.py' with setup_py( 2016-08-12 12:16:48 -05:00
Todd Gamblin
e1c2ea5123 Merge pull request #1342 from adamjstewart/features/cgns 
Add CGNS package
 2016-08-12 09:19:07 -07:00
Adam J. Stewart
d4377c1293 Add Python 3.5 support, latest version of PySide 2016-08-12 09:59:38 -05:00
Adam J. Stewart
633e540a17 Use GitHub URL for ImageMagick 2016-08-11 14:13:33 -05:00
Adam J. Stewart
f147d64527 Rebase messed up flake8 2016-08-11 11:01:57 -05:00
Adam J. Stewart
04cee45ac9 Skip webengine until webkit support is added 2016-08-11 10:33:43 -05:00
Adam J. Stewart
2b0444b6f4 Latest version of pyside still has problems, add deps 2016-08-11 10:33:43 -05:00
Adam J. Stewart
b6fad65f52 Combine patch for all versions 
Patch doesn't work with @when unless you specify a patch for every
version. When running `spack patch` for a version without a patch,
spack thinks that a patch exists, tries to apply it, but it doesn't
exist. Spack gets very confused.
 2016-08-11 10:33:43 -05:00
Adam J. Stewart
1363b05e93 Add test dependencies 2016-08-11 10:33:43 -05:00
Adam J. Stewart
5cc76f7d84 Fix patch for py-pyside 1.2.4 2016-08-11 10:33:43 -05:00
Adam J. Stewart
59ce0c7514 Add patch to build qt 4 with GCC 6 2016-08-11 10:33:42 -05:00
Adam J. Stewart
ddf1879bed Remove glib dependency, causes problems with PCRE and JavaScript 2016-08-11 10:33:02 -05:00
Adam J. Stewart
90dd26397c Fix qt patch 2016-08-11 10:33:02 -05:00
Adam J. Stewart
7135299a66 Add latest version of pcre 2016-08-11 10:33:02 -05:00
Adam J. Stewart
ac15d5d619 Add patch for qt gamepad compilation problems 2016-08-11 10:33:01 -05:00
Adam J. Stewart
eac9a5905f Flake8 and url_for_version changes 2016-08-11 10:33:01 -05:00
Adam J. Stewart
80742b2647 Add latest version of qt 2016-08-11 10:30:31 -05:00
Adam J. Stewart
8a0824df09 Update matplotlibrc filtering for GUI backends 2016-08-11 10:28:35 -05:00
Adam J. Stewart
a388871083 Update ImageMagick to latest version 2016-08-11 10:28:35 -05:00
Adam J. Stewart
2b83ea30e7 Re-add ipython support 2016-08-11 10:28:35 -05:00
Adam J. Stewart
f56de63972 Fix cycler dependencies, update qhull version names 2016-08-11 10:28:35 -05:00