Commit graph

25225 commits

Author SHA1 Message Date
David M. Rogers
6d0b59b7ea
sparrow: add new package (#29291) 2022-03-21 16:59:11 +01:00
Greg Becker
dba7a03daa
config add: fix parsing of validator error to infer type from oneOf (#29475) 2022-03-21 16:55:02 +01:00
miheer vaidya
560abdc46d
Barvinok: fix pet variant description, add maintainer (#29421) 2022-03-21 16:53:44 +01:00
Glenn Johnson
9c2465173e
r-tinytex: add v0.37 (#29627) 2022-03-21 09:51:00 -06:00
Thomas Madlener
06a9496a39
geant4: Add external find support (#29642)
* geant4: Add external find support (partial)

* Fix style

* Fix style another time
2022-03-21 15:50:42 +00:00
Glenn Johnson
8fcfde62df
r-terra: add v1.5-21 (#29626) 2022-03-21 09:43:42 -06:00
dependabot[bot]
b65054881f
build(deps): bump docker/build-push-action from 2.9.0 to 2.10.0 (#29506)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2.9.0 to 2.10.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](7f9d37fa54...ac9327eae2)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-03-21 16:39:45 +01:00
Cameron Smith
6b6f67e90f
pumi: add v2.2.7 (#29521) 2022-03-21 16:36:23 +01:00
Larry Knox
e485d16c62
hdf5: add v1.13.1 (#29514)
Also add preferred=True to all "maintenance versions".
2022-03-21 16:23:41 +01:00
Harmen Stoppels
18f71aef1e
elfio: add v3.10 (#29644) 2022-03-21 08:27:08 -06:00
Glenn Johnson
ef0bc71035
r-recipes: add v0.2.0 (#29623)
Also add new package: r-hardhat.
2022-03-21 09:21:02 -05:00
Glenn Johnson
b4ab4ddc27
augustus: explicitly depend on ncurses (#29597) 2022-03-21 15:18:19 +01:00
Glenn Johnson
f2b123760c
bamtools: add missing dependency on jsoncpp (#29598) 2022-03-21 15:16:34 +01:00
Glenn Johnson
db5bd7134a
cistem: add missing dependency on libtiff (#29599) 2022-03-21 15:15:59 +01:00
Glenn Johnson
26a62a3258
cnvnator: tweak dependencies (#29600)
- constrain samtools to version 1.13
- replace lzma dependency with xz
- add missing dependencies for libdeflate and openssl
- explicitly set LD_FLAGS for dependencies in makefile
2022-03-21 15:15:27 +01:00
Glenn Johnson
732f1dd14d
gate: add v9.1 (#29601) 2022-03-21 15:14:54 +01:00
Glenn Johnson
e05f453531
gatetools: add v0.11.2 (#29602) 2022-03-21 15:14:20 +01:00
Glenn Johnson
d69e8dbace
relion: add dependency on libpng for version 4 (#29615) 2022-03-21 15:10:52 +01:00
Glenn Johnson
3ec27332ec
r-future: add v1.24.0 (#29616) 2022-03-21 15:09:51 +01:00
Glenn Johnson
311dc67536
r-jsonlite: add v1.8.0 (#29618) 2022-03-21 15:08:56 +01:00
Glenn Johnson
1b849aaa2c
r-philentropy: add v0.6.0 (#29619)
This also adds r-poorman as a new package.
2022-03-21 15:08:34 +01:00
Glenn Johnson
b67c7e593b
r-pillar: add v1.7.0 (#29620) 2022-03-21 15:08:08 +01:00
Glenn Johnson
daaac3e2f0
r-rcurl: add v1.98-1.6 (#29622) 2022-03-21 15:06:41 +01:00
haralmha
c7f9431e1b
crmc: new package (#29371) 2022-03-21 14:53:06 +01:00
haralmha
b0a712097a
ftjam: add new package (#29320) 2022-03-21 14:52:12 +01:00
Paul Kuberry
558e99ecca
xyce: switch to Trilinos 13.2.0 and add dependencies for +pymi (#29331)
* xyce: switch to Trilinos 13.2.0 and add dependencies for +pymi

* xyce: clean up Trilinos dependency logic
2022-03-21 14:26:41 +01:00
Adam J. Stewart
12ed453707
py-torchgeo: add v0.2.1 (#29632) 2022-03-21 14:24:15 +01:00
Jörg Behrmann
8fdc2ff462
python: add v3.10.3 (#29640)
From the release announcement: "This is a special bugfix release ahead of
schedule to address a memory leak that was happening on certain function calls
when using Cython. The memory leak consisted of a small constant amount of bytes
in certain function calls from Cython code. Although in most cases this was not
very noticeable, it was very impactful for long-running applications and certain
usage patterns. Check bpo-46347 for more information."
2022-03-21 13:18:52 +01:00
Harmen Stoppels
cf3cfab86c
libtree: add upperbound for elfio (#29637) 2022-03-21 12:59:15 +01:00
Harmen Stoppels
8f5b9a89fb
major.minor.micro.dev0 Spack version (#25267)
When you install Spack from a tarball, it will always show an exact
version for Spack itself, even when you don't download a tagged commit:

```
$ wget -q https://github.com/spack/spack/archive/refs/heads/develop.tar.gz
$ tar -xf develop.tar.gz
$ ./spack-develop/bin/spack --version
0.16.2
```

This PR sets the Spack version to `0.18.0.dev0` on develop, following [PEP440](https://github.com/spack/spack/pull/25267#issuecomment-896340234) as
suggested by Adam Stewart.

```
spack (fix/set-dev-version)$ spack --version
0.18.0.dev0 (git 0.17.1-1526-e270464ae0)
spack (fix/set-dev-version)$ mv .git .git_
spack $ spack --version
0.18.0.dev0
```

- [x] Update the release guide
- [x] Add __version__ to spack's __init__.py
- [x] Use PEP 440 canonical version strings
- [x] Make spack --version output [actual version] (git version)

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-03-20 22:37:55 -06:00
Harmen Stoppels
6d1da528f7
cmake: 3.21.x, 3.22.x bump (#29633) 2022-03-20 17:50:20 -06:00
Valentin Volkl
6611f0bf4b
rivet: fix dependency build types (#29358)
* rivet: fix dependency build types

If it isn't a python package, there is no good reason to change the default build type to remove link

* rivet: turn swig into build dependency
2022-03-20 14:18:12 -06:00
Luca Heltai
3d6156d3b2
dealii: new version and restrict sundials version (#29631) 2022-03-20 15:47:37 -04:00
Glenn Johnson
c6b69a8244
py-torch: set INTEL_MKL_DIR (#29613)
Add the INTEL_MKL_DIR variable so py-torch can find mkl if provided by
intel-oneapi-mkl.
2022-03-20 10:35:18 -05:00
Diego Alvarez
d349677dcb
OpenJDK: add 11.0.14.1, 17.0.2 (#29167)
* Added OpenJDK 11.0.14.1 and 17.0.2

* Fix preferred_defined change.
2022-03-20 08:55:22 -04:00
Vivian Hafener
b5dc0c63ea
rust: new version 1.58.1 and deprecate older (#29322)
* Added rust version 1.58.1

* Fixed flake8 style errors

Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
2022-03-20 08:49:08 -04:00
Martin Aumüller
048b5ad2d0
botan: new versions 2.18.2, 2.19.0 and 2.19.1 (#29361) 2022-03-20 08:42:30 -04:00
Doug Jacobsen
9b0d5cbabf
Enable GCS urls as valid (#29592)
* Add tests to ensure google cloud storage urls work as mirrors

This commit adds two tests to track that GCS buckets can work as
mirrors, and can be parsed as valid URLs.

Currently, gs:// format URLs are not correctly parsed.

* Fix URL parsing for GCS buckets

This commit adds GCS bucket URLs as valid URLs.
2022-03-20 01:13:00 -07:00
Peter Scheibel
26552533be
We were doing a check in a metaclass to ensure that Package classes weren't defining a function themselves; this check failed (erroneously) if that Package class subclassed another package class (because the check examined all superclasses and thought the definition we automatically add was an offender) (#29569) 2022-03-19 21:37:40 -07:00
Adam J. Stewart
4b0cddb674
GDAL: add v3.4.2 (#29496) 2022-03-19 20:08:11 -05:00
Glenn Johnson
c3a1dd0bdb
py-torch-sparse: add missing dependency on py-torch (#29612) 2022-03-19 20:00:35 -05:00
Nils Vu
bfb6873ce3
Revert "Add command for reading a json-based DB description (#24894)" (#29603)
This reverts commit 531b1c5c3d.
2022-03-19 16:30:46 -06:00
Glenn Johnson
71c9334e30
py-pysam: update to version 0.18.0 (#29609) 2022-03-19 15:50:28 -06:00
Carlos Bederián
8c508b530b
mmg: add vtk variant (#29533) 2022-03-19 10:02:25 -06:00
Adam J. Stewart
7f3a63aaa6
py-rasterio: add v1.2.10 (#29497) 2022-03-19 08:38:55 -04:00
Ben Darwin
38cce0355c
ants: add version 20220205 (#29500)
A new release hasn't been tagged in over a year.
2022-03-19 08:36:24 -04:00
Timothy Brown
892aa0fd16
WRF: Update AOCC patches for latest WRF version. (#29529) 2022-03-19 08:26:30 -04:00
Joel Falcou
a627684115
EVE: new version 2022.03.0 (#29511) 2022-03-19 08:23:46 -04:00
lorddavidiii
9c780ac413
opencl-c-headers and opencl-clhpp: add new versions (#29535)
- these versions are a synchronization with the OpenCL v3.0.10
  specification release.
2022-03-19 08:19:03 -04:00
Qian Jianhua
8537634283
dicom3tools: fix build error with Fujitsu compiler (#29435) 2022-03-18 23:03:36 -05:00